Carg19143 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg19143
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 12583334 .. 12585032 (-)
RNA-Seq ExpressionCarg19143
SyntenyCarg19143
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAATCAGCTCCAGGTAATTTGGGCTGGGTTCTTGGAAACAAGCATGGAAATGAATGATAAATGGGGAAGAATTAGACTGTTGTGTTTCTTTAGTACGAAGCAAGGGAGACTGACAACTACACGGAATTTCAACTAACTGTAAGGAATAAGCCTTTCTCCCTTGTTGGTTGCAGAGACAAGACAAGAATTTATGGGAAGAGAGCGATTATCCAGTGAGGCACAGCCCCACAACAAGTCTCAGTGTCTACGAATTGCTTCTGAAACCTTCCAGATCTCAAAGAGTTGTAAGCTTCCTAACTCTTAAATCAGATTCAATTTGGCTTTGTGATTTACTTGATTGATTGAAAGTTGGTTGAAAACTCCCACACGTTTTCAATGATATGATCCCTTCCCCCTTCCCCACTTTAGTTTTTCAGGTTTGGATTTTGTAACTACTTTAACTGTTGGGGACACGTTTTCTTAGAGGACCTTGAATTATTTACTATCAAAATTTGTCAATTTCATGTCGGAAGATGCTAAATTTCGAAGAATTTGACCACCTGGTTAGTAAAAACACTTTCCAAATGTTTGTTTATCGATCTACTTTTTTAAAAAGAAAGGGAACTCATTAGTCATTTTTATTCAATTTTAAAAAGGCGCCTACCTCTCTTACCGGTGTAGGAGAGAAGAAAGTTTAACTGGTTAATGTGTCAATTTGTCGATCTGAAGAAAAAAATTTGTCAATTTCATGTTGGGAGATGCTAAAGTTCGAAGAATTTGACCATCGATTTAGTAAAAACACTTTTCAAACATTTAGTTATTGGTCCGCCATTTCTTTATTTTTAAAGGGAACCCATTTTTAAAAATTTCCCGTCTCTCTGAAAAGTGTAAGATAGAAGATAAAAGGATTCTCTCCAAAGATCTTTTTTTCAATCAAAGAGAAGAAATCTCCAAGAAACGTAGAGGAAAGAGTTTTGCGGGAATTGTCTTGAATTCTTTCAACCCGTGACATTGCCCGATTAGTCCAGCTAAGCTAAGAGAGAAAAATGACTGTCCTTCCAATCAAGCAATGCCCTCACCAATGTTAACATGTTAAATTTTAATGCTAAATTATTTTAAAAATCTTTAATATTACCCGTAATATTTTATAAAATTTTCAAAACTATCATTAAAATATAAATTCATTAAGATGTTAGACATGGTGTAATGTTGTTAATCATTGTTACGGTCGATTTAGATTATTACTATGTTAAATTTTTAATTAAATTTTACTTCATATTGAAAATAATATTGTAAAATTAAAAAAAAAAAACGGGAATATTTTAAAATAAGAAGCAAAATTTAGGAATATTAATTTTTATAGTATTGCCAAATTCGAAGAGTAGAATGAAATGAATTGAGGAGTTATTTAAACCTAAGATTTAACTTGTTTGGAAAATATAAAATGGCTGTCGAGATTCTATTGCCGTTTTGACACACTGACCTGTCCGTGAGTACAAGCCTTTCGAAGACGTGATTAAAAAAAAAGAAAAATAAATATATATATATATATATATAAAGCGTTAGTCATCAAAAGTTAGATGAATATATTTAAAGCTCCGAGTCTGCGCTGCGCATTTCGAGGTTCTCATGTCTATTTGTTCAGTTGGAGCCTGAAGCCAGAGGTCTCTCTGTTTTCGCGCCTCCACGAAATCTCCGCCGTTTTTTCGTCTGA

mRNA sequence

ATGGTTGAATCAGCTCCAGGTAATTTGGGCTGGAGACAAGACAAGAATTTATGGGAAGAGAGCGATTATCCAGTGAGGCACAGCCCCACAACAAGTCTCAGTGTCTACGAATTGCTTCTGAAACCTTCCAGATCTCAAAGAGTTTTGGAGCCTGAAGCCAGAGGTCTCTCTGTTTTCGCGCCTCCACGAAATCTCCGCCGTTTTTTCGTCTGA

Coding sequence (CDS)

ATGGTTGAATCAGCTCCAGGTAATTTGGGCTGGAGACAAGACAAGAATTTATGGGAAGAGAGCGATTATCCAGTGAGGCACAGCCCCACAACAAGTCTCAGTGTCTACGAATTGCTTCTGAAACCTTCCAGATCTCAAAGAGTTTTGGAGCCTGAAGCCAGAGGTCTCTCTGTTTTCGCGCCTCCACGAAATCTCCGCCGTTTTTTCGTCTGA

Protein sequence

MVESAPGNLGWRQDKNLWEESDYPVRHSPTTSLSVYELLLKPSRSQRVLEPEARGLSVFAPPRNLRRFFV
Homology
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BLAST of Carg19143 vs. NCBI nr
Match: KAG7022940.1 (hypothetical protein SDJN02_16676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 3.3e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MVESAPGNLGWRQDKNLWEESDYPVRHSPTTSLSVYELLLKPSRSQRVLEPEARGLSVFA 60
          MVESAPGNLGWRQDKNLWEESDYPVRHSPTTSLSVYELLLKPSRSQRVLEPEARGLSVFA
Sbjct: 1  MVESAPGNLGWRQDKNLWEESDYPVRHSPTTSLSVYELLLKPSRSQRVLEPEARGLSVFA 60

Query: 61 PPRNLRRFFV 71
          PPRNLRRFFV
Sbjct: 61 PPRNLRRFFV 70

The following BLAST results are available for this feature:
BLAST of Carg19143 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022940.13.3e-32100.00hypothetical protein SDJN02_16676, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg19143 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19143 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg19143 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19143-RACarg19143-RAmRNA