Carg19121 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19121
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CASP-like protein
Location	Carg_Chr11: 12447327 .. 12447665 (-)
RNA-Seq Expression	Carg19121
Synteny	Carg19121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATAGCAGGGCTATTCGCCGTCGCCGCGGCCGCCGCCGCCTCCACCATCGTCCTGTCAGCTCCGCCGTCCTCCGCCGGCCTCCACAAAACCACCTTCTCCCATCAGGTATGAAGACACTAACTTCTCATTTCTCGATACCCTTTTATAATCTAACATCTTCGAAAAGAAAATTCTTGGCAATAACCGATGTGGGACGAAATTCAGGAAAAGGTCAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCCCCGCCGTCCACGGCGCCCGATCACTTTGCTCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTAGTCACTGCTCATAGATAA

mRNA sequence

ATGAAGATAGCAGGGCTATTCGCCGTCGCCGCGGCCGCCGCCGCCTCCACCATCGTCCTGTCAGCTCCGCCGTCCTCCGCCGGCCTCCACAAAACCACCTTCTCCCATCAGGAAAAGGTCAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCCCCGCCGTCCACGGCGCCCGATCACTTTGCTCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTAGTCACTGCTCATAGATAA

Coding sequence (CDS)

ATGAAGATAGCAGGGCTATTCGCCGTCGCCGCGGCCGCCGCCGCCTCCACCATCGTCCTGTCAGCTCCGCCGTCCTCCGCCGGCCTCCACAAAACCACCTTCTCCCATCAGGAAAAGGTCAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCCCCGCCGTCCACGGCGCCCGATCACTTTGCTCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTAGTCACTGCTCATAGATAA

Protein sequence

MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDHFAPRFDGLRFIETLVTAHR

Homology

[Close]

BLAST of Carg19121 vs. NCBI nr
Match: KAG7022918.1 (hypothetical protein SDJN02_16654, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.3e-33
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDH 60
          MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDH
Sbjct: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDH 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Carg19121 vs. NCBI nr
Match: KAG6589218.1 (hypothetical protein SDJN03_17783, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.4 bits (363), Expect = 4.1e-31
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDH 60
          MKIAGLFA AAAA+ASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDH
Sbjct: 1  MKIAGLFA-AAAASASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDH 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of Carg19121 vs. NCBI nr
Match: XP_022952670.1 (uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothetical protein SDJN03_29089, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011972.1 hypothetical protein SDJN02_26880 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 8.5e-21
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKV-NRDEEISPSRRSPPSTAPD 60
          MK  GLFA A+ AAAS   LSAP SSAG+ KTTFSHQEKV +RDEE SPSR SPPSTAPD
Sbjct: 3  MKKTGLFA-ASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPD 62

Query: 61 HFAPRFDGLRFIETLVTAHR 80
           FAPRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Carg19121 vs. NCBI nr
Match: XP_038888462.1 (uncharacterized protein LOC120078298 [Benincasa hispida])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEI-SPSRRSPPSTAPD 60
          MK  GLFA A+ AAAS   LSAPPSSAG+ KTTFSHQE+V RD+EI +PSRRSPPSTA +
Sbjct: 1  MKKTGLFA-ASVAAASATALSAPPSSAGILKTTFSHQEQVTRDQEITTPSRRSPPSTAAE 60

Query: 61 HFAPRFDGLRFIETLVTAHR 80
           FAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Carg19121 vs. NCBI nr
Match: XP_023554654.1 (uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 62/80 (77.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKV-NRDEEISPSRRSPPSTAPD 60
          MK  GLFA A+ AAAS   LSAP SS G+ KTTFSHQEKV +RDEE SPSR SPPSTA D
Sbjct: 3  MKKTGLFA-ASVAAASATALSAPSSSTGVLKTTFSHQEKVISRDEETSPSRISPPSTAAD 62

Query: 61 HFAPRFDGLRFIETLVTAHR 80
           FAPRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Carg19121 vs. ExPASy TrEMBL
Match: A0A6J1GMF4 (uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC111455296 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKV-NRDEEISPSRRSPPSTAPD 60
          MK  GLFA A+ AAAS   LSAP SSAG+ KTTFSHQEKV +RDEE SPSR SPPSTAPD
Sbjct: 3  MKKTGLFA-ASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPD 62

Query: 61 HFAPRFDGLRFIETLVTAHR 80
           FAPRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Carg19121 vs. ExPASy TrEMBL
Match: A0A6J1I0M0 (uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 63/80 (78.75%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKV-NRDEEISPSRRSPPSTAPD 60
          MK  GLFA A+ AAAS   LSAP SSAG+ KTTFSHQEKV  RDEE SPSR SPPSTA D
Sbjct: 3  MKKTGLFA-ASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAAD 62

Query: 61 HFAPRFDGLRFIETLVTAHR 80
           FAPRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of Carg19121 vs. ExPASy TrEMBL
Match: A0A0A0K2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.9e-19
Identity = 60/80 (75.00%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEE-ISPSRRSPPSTAPD 60
          MK  GLFA A+ AAAS   LSAPP+S GL KT FS QEKV RDEE  +P+RRSPPSTA D
Sbjct: 1  MKKTGLFA-ASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAAD 60

Query: 61 HFAPRFDGLRFIETLVTAHR 80
           FAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of Carg19121 vs. ExPASy TrEMBL
Match: A0A5D3C7A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003450 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-18
Identity = 61/81 (75.31%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKV-NRDEEI-SPSRRSPPSTAP 60
          MK  GLFA A+ AAAS   LSAPPSS    KT FSHQEKV  RDEEI +P+RRSPPSTA 
Sbjct: 1  MKKTGLFA-ASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTAS 60

Query: 61 DHFAPRFDGLRFIETLVTAHR 80
          D FAPRFDGLRFIETLVTAHR
Sbjct: 61 DQFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Carg19121 vs. ExPASy TrEMBL
Match: A0A6A4LEC7 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_10451 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAP-PSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPD 60
          MKI+G+ A A+AAAAS   +S+P PSS  L  +    + + + D+ +S   R  PS A D
Sbjct: 2  MKISGILAAASAAAASAAAISSPTPSSTSLPNS----KSERSYDKAVSSKSRVNPSAASD 61

Query: 61 HFAPRFDGLRFIETLVTAHR 80
           +APRFDGLRFIETLVTAHR
Sbjct: 62 KYAPRFDGLRFIETLVTAHR 77

[Close]

BLAST of Carg19121 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.2e-06
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPD- 60
          MK  G+ A + + AAS   +SA  ++  +   +FS  E     +E    +R    ++ D 
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSV---SFSSPESNLSRQEAKEKQRKKKGSSEDG 60

Query: 61 ---HFAPRFDGLRFIETLVTAHR 80
              FAPRFDGLRFIETLVTAHR
Sbjct: 61 GDEKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of Carg19121 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 5.9e-04
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 3  IAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDHFA 62
          +A + AV+ AA +S+ +L  PP S                  ++  SR++  S   D+F 
Sbjct: 8  VASVIAVSTAALSSSSIL--PPVS-----------------PKVWESRKTNGS---DNFE 62

Query: 63 PRFDGLRFIETLVTAHR 80
          PRFDGLRFIETLVTAHR
Sbjct: 68 PRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of Carg19121 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022918.1	3.3e-33	100.00	hypothetical protein SDJN02_16654, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589218.1	4.1e-31	97.47	hypothetical protein SDJN03_17783, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952670.1	8.5e-21	80.00	uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothet...	[more]
XP_038888462.1	1.1e-20	77.50	uncharacterized protein LOC120078298 [Benincasa hispida]	[more]
XP_023554654.1	2.1e-19	77.50	uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19121 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GMF4	4.1e-21	80.00	uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1I0M0	1.3e-19	78.75	uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357...	[more]
A0A0A0K2C1	3.9e-19	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1	[more]
A0A5D3C7A0	4.3e-18	75.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6A4LEC7	1.8e-08	52.50	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]

BLAST of Carg19121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	2.2e-06	40.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	5.9e-04	41.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..63
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19121-RA	Carg19121-RA	mRNA