Carg19116 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19116
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NDR1/HIN1-like protein 6
Location	Carg_Chr11: 12427349 .. 12428056 (+)
RNA-Seq Expression	Carg19116
Synteny	Carg19116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATCCCCGACAAAACCCACATATATTATGCACTCCAACAACCACCAAACCAGCCACCGCCCTCCACCCTATCGCCGCAACGTCCCCAGATACCATACCAAAGCCGGCGGCGGCGGTGGCAGCCATTGTTGTTTAAAATGCATCTGTATCTGTTACATTTTCCTCTGTTTCTTCATCTTTGTTCTACTTAGCCTCGCCTATTTCATCGTCACGTTTTACAGACCCAAAATCCCTTCTTACAAAGTCGCCGATTTCAACGTCCACGTCTTCAATGTCAAACAGGATTTCAGCCTTTACACAGAATTCATCGTGATCGTTGAATCCAATAATCCAAATGAAAACATTGACTTCATCTACGGCAGAGGAAGCTCTGTTTCTGTTCTTTACAATGATTCAATGCTCTGCGCCGGAAAGATTCCTAATTTCCGGCAACCGCCGAGGAATGTGACGGATATAAGCATTTTGCTAAGTGGGGTTAGCGAGTTTGGGTCGGGGCTGCAAGAGGCGCTGATGCAGAACAGACATAGTGGGCAGATTCCTCTGCTCGTGGCGGTGAAAGTTCCGGTGACGGTGGTGATCGGAGGGTTGGCGCTGAGGAAGATCAATGTTCTTGTGAATTGTTCGTTGGTGGTTGATAATTTGTCCCCAAACAAGACAGTTGGGATTTTGTCGAGTAATTATACTTACGGTGCTACCTTGTGA

mRNA sequence

ATGGAAGAATCCCCGACAAAACCCACATATATTATGCACTCCAACAACCACCAAACCAGCCACCGCCCTCCACCCTATCGCCGCAACGTCCCCAGATACCATACCAAAGCCGGCGGCGGCGGTGGCAGCCATTGTTGTTTAAAATGCATCTGTATCTGTTACATTTTCCTCTGTTTCTTCATCTTTGTTCTACTTAGCCTCGCCTATTTCATCGTCACGTTTTACAGACCCAAAATCCCTTCTTACAAAGTCGCCGATTTCAACGTCCACGTCTTCAATGTCAAACAGGATTTCAGCCTTTACACAGAATTCATCGTGATCGTTGAATCCAATAATCCAAATGAAAACATTGACTTCATCTACGGCAGAGGAAGCTCTGTTTCTGTTCTTTACAATGATTCAATGCTCTGCGCCGGAAAGATTCCTAATTTCCGGCAACCGCCGAGGAATGTGACGGATATAAGCATTTTGCTAAGTGGGGTTAGCGAGTTTGGGTCGGGGCTGCAAGAGGCGCTGATGCAGAACAGACATAGTGGGCAGATTCCTCTGCTCGTGGCGGTGAAAGTTCCGGTGACGGTGGTGATCGGAGGGTTGGCGCTGAGGAAGATCAATGTTCTTGTGAATTGTTCGTTGGTGGTTGATAATTTGTCCCCAAACAAGACAGTTGGGATTTTGTCGAGTAATTATACTTACGGTGCTACCTTGTGA

Coding sequence (CDS)

ATGGAAGAATCCCCGACAAAACCCACATATATTATGCACTCCAACAACCACCAAACCAGCCACCGCCCTCCACCCTATCGCCGCAACGTCCCCAGATACCATACCAAAGCCGGCGGCGGCGGTGGCAGCCATTGTTGTTTAAAATGCATCTGTATCTGTTACATTTTCCTCTGTTTCTTCATCTTTGTTCTACTTAGCCTCGCCTATTTCATCGTCACGTTTTACAGACCCAAAATCCCTTCTTACAAAGTCGCCGATTTCAACGTCCACGTCTTCAATGTCAAACAGGATTTCAGCCTTTACACAGAATTCATCGTGATCGTTGAATCCAATAATCCAAATGAAAACATTGACTTCATCTACGGCAGAGGAAGCTCTGTTTCTGTTCTTTACAATGATTCAATGCTCTGCGCCGGAAAGATTCCTAATTTCCGGCAACCGCCGAGGAATGTGACGGATATAAGCATTTTGCTAAGTGGGGTTAGCGAGTTTGGGTCGGGGCTGCAAGAGGCGCTGATGCAGAACAGACATAGTGGGCAGATTCCTCTGCTCGTGGCGGTGAAAGTTCCGGTGACGGTGGTGATCGGAGGGTTGGCGCTGAGGAAGATCAATGTTCTTGTGAATTGTTCGTTGGTGGTTGATAATTTGTCCCCAAACAAGACAGTTGGGATTTTGTCGAGTAATTATACTTACGGTGCTACCTTGTGA

Protein sequence

MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFFIFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL

Homology

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BLAST of Carg19116 vs. NCBI nr
Match: XP_022930831.1 (NDR1/HIN1-like protein 6 [Cucurbita moschata] >KAG7022913.1 NDR1/HIN1-like protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469.2 bits (1206), Expect = 2.1e-128
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFF 60
           MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFF
Sbjct: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFF 60

Query: 61  IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120
           IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI
Sbjct: 61  IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120

Query: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180
           YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ
Sbjct: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180

Query: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL
Sbjct: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 235

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BLAST of Carg19116 vs. NCBI nr
Match: XP_023531997.1 (NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.5 bits (1155), Expect = 1.8e-122
Identity = 228/235 (97.02%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFF 60
           MEESP KPTYIMHS+NHQTSHRPPPYRRNVPRYHTKAGGGGG  CCLKCICICYIFLCFF
Sbjct: 1   MEESPPKPTYIMHSDNHQTSHRPPPYRRNVPRYHTKAGGGGG-RCCLKCICICYIFLCFF 60

Query: 61  IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120
           IFVLLSLAYFIVTFYRPKIPSYKVADF+VHVFNVK DFSLYTEFIVIVESNNPNENIDFI
Sbjct: 61  IFVLLSLAYFIVTFYRPKIPSYKVADFDVHVFNVKPDFSLYTEFIVIVESNNPNENIDFI 120

Query: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180
           YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSG+
Sbjct: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGK 180

Query: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL
Sbjct: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 234

[Close]

BLAST of Carg19116 vs. NCBI nr
Match: XP_022988931.1 (NDR1/HIN1-like protein 6 [Cucurbita maxima])

HSP 1 Score: 441.8 bits (1135), Expect = 3.7e-120
Identity = 221/235 (94.04%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFF 60
           MEESP KPT IMHS+NHQTSHRPPPYRR+VPRYHTKAGGGGG HCCLKCICICYIFLCFF
Sbjct: 1   MEESPPKPTNIMHSDNHQTSHRPPPYRRHVPRYHTKAGGGGGGHCCLKCICICYIFLCFF 60

Query: 61  IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120
           I VLLSLAYFIVTFYRPKIPSYKV+DFNVHVFNVK DFSLYTEFIVIVESNNPNENIDFI
Sbjct: 61  IVVLLSLAYFIVTFYRPKIPSYKVSDFNVHVFNVKPDFSLYTEFIVIVESNNPNENIDFI 120

Query: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180
           YGRGSSVSVLYNDSMLCAGKIPNFRQPP NVTD+SILLSGVSEFGSG+QEALMQNRHSG+
Sbjct: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPMNVTDMSILLSGVSEFGSGMQEALMQNRHSGK 180

Query: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVD+LSPNK VGILSSNYTYGATL
Sbjct: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDDLSPNKKVGILSSNYTYGATL 235

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BLAST of Carg19116 vs. NCBI nr
Match: XP_038888833.1 (NDR1/HIN1-like protein 6 [Benincasa hispida])

HSP 1 Score: 350.5 bits (898), Expect = 1.1e-92
Identity = 178/235 (75.74%), Postives = 201/235 (85.53%), Query Frame = 0


Query: 3   ESPTKPTYIMHS-NNHQTSHRPPPYRRNVPRYHTKA-GGGGGSHCCLKCICICYIFLCFF 62
           E+P KP Y+M S N+HQ S RPPPYRRNVPRYH+KA GGGGG  CCLKCIC CY FL F 
Sbjct: 2   EAPPKPKYVMLSDNHHQASLRPPPYRRNVPRYHSKAHGGGGGIGCCLKCICCCYCFLFFI 61

Query: 63  IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 122
           IF L  L YF   ++ P+IPSYKV +F VH FNVK DFSLYTEFIVIV+++NPNENIDFI
Sbjct: 62  IFALFGLGYFFFYYFNPQIPSYKVTNFRVHAFNVKSDFSLYTEFIVIVKADNPNENIDFI 121

Query: 123 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 182
           YGR SSVSV+Y++S LCAGKIP+FRQP +NVTDISI+LSG SEFGSGLQEALMQNRHSG+
Sbjct: 122 YGRDSSVSVMYSESELCAGKIPDFRQPAKNVTDISIMLSGNSEFGSGLQEALMQNRHSGK 181

Query: 183 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPLLV VKVPVTVV+G L+L+K+ V VNCSLVVDNLSPNK VGILSSNYTYGA+L
Sbjct: 182 IPLLVEVKVPVTVVVGSLSLKKVYVFVNCSLVVDNLSPNKKVGILSSNYTYGASL 236

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BLAST of Carg19116 vs. NCBI nr
Match: XP_008455332.1 (PREDICTED: NDR1/HIN1-Like protein 3-like [Cucumis melo])

HSP 1 Score: 343.2 bits (879), Expect = 1.8e-90
Identity = 176/236 (74.58%), Postives = 201/236 (85.17%), Query Frame = 0


Query: 3   ESPTKPTYIMHS-NNHQTSHRPPPYRRNVPRYHTKA---GGGGGSHCCLKCICICYIFLC 62
           E+P KP Y+M S N+HQTS RPPPYRRNVPRY +KA   GGGGG  CCLKCIC  Y F+ 
Sbjct: 2   EAPPKPKYVMLSDNHHQTSLRPPPYRRNVPRYQSKAHGGGGGGGVGCCLKCICCFYCFIF 61

Query: 63  FFIFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENID 122
           F IF L    YF+  +Y P+IPSYKV++F+VH FNVK DFSLYTEFIVIV+++NPN+NI 
Sbjct: 62  FLIFALFGFGYFLYYYYDPQIPSYKVSNFSVHAFNVKPDFSLYTEFIVIVKADNPNQNIG 121

Query: 123 FIYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHS 182
           FIYG+ SSVSV+Y+ S LC+GKIPNFRQP +NVTDISILLSG SEFGSGLQEALMQNRHS
Sbjct: 122 FIYGKNSSVSVMYSKSELCSGKIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS 181

Query: 183 GQIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGAT 235
           G+IPLLV VKVPVTVVIG L+L+K+NVLVNCSLVVDNLSPNK VGILSSNYTYGA+
Sbjct: 182 GKIPLLVEVKVPVTVVIGSLSLKKVNVLVNCSLVVDNLSPNKKVGILSSNYTYGAS 237

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BLAST of Carg19116 vs. ExPASy Swiss-Prot
Match: Q8LD98 (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.2e-22
Identity = 71/228 (31.14%), Postives = 112/228 (49.12%), Query Frame = 0


Query: 5   PTKPTYIMHSNNHQTSHRPP---PYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFFI 64
           PT P  ++   + ++ H  P   P  +   R+   A       CC +C C  + FL   +
Sbjct: 20  PTAP--LVPRGSSRSEHGDPSKVPLNQRPQRFVPLAPPKKRRSCCCRCFCYTFCFLLLLV 79

Query: 65  FVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIY 124
             + +    +   ++PK+P Y +    +  F + QD SL T F V + + NPNE I   Y
Sbjct: 80  VAVGASIGILYLVFKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTITAKNPNEKIGIYY 139

Query: 125 GRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEAL-MQNRHSGQ 184
             GS ++V Y +  L  G +P F Q   N T I + ++G ++  SGL+  L  Q + +G 
Sbjct: 140 EDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGN 199

Query: 185 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSN 229
           IPL + V  PV V  G L L ++  LV C + VD+L+ N  + I SS+
Sbjct: 200 IPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLATNNVIKIQSSS 245

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BLAST of Carg19116 vs. ExPASy Swiss-Prot
Match: Q9ZVD2 (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.9e-16
Identity = 64/222 (28.83%), Postives = 105/222 (47.30%), Query Frame = 0


Query: 4   SPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFFIFV 63
           +P   TY++     Q    PPP   N  R+   +        C  C C  ++   F + V
Sbjct: 31  APPPSTYVIQVPKDQIYRIPPP--ENAHRFEQLSRKKTNRSNCRCCFC-SFLAAVFILIV 90

Query: 64  LLSLAYFIV-TFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYG 123
           L  +++ ++   YRP+ P Y +  F+V   N+     +   F V V S N N  I   Y 
Sbjct: 91  LAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYE 150

Query: 124 RGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVS-EFGSGLQEALMQNRHSGQI 183
           + SSV V YND  +  G +P F QP +NVT + ++LSG   +  SG+++ +        +
Sbjct: 151 KESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTV 210

Query: 184 PLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNL-SPNKTV 223
           P  + +K PV +  G +    + V V+C + VD L +P++ V
Sbjct: 211 PFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRIV 249

[Close]

BLAST of Carg19116 vs. ExPASy TrEMBL
Match: A0A6J1ES08 (NDR1/HIN1-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111437198 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.0e-128
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFF 60
           MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFF
Sbjct: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFF 60

Query: 61  IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120
           IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI
Sbjct: 61  IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120

Query: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180
           YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ
Sbjct: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180

Query: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL
Sbjct: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 235

[Close]

BLAST of Carg19116 vs. ExPASy TrEMBL
Match: A0A6J1JIL7 (NDR1/HIN1-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC111486138 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.8e-120
Identity = 221/235 (94.04%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFF 60
           MEESP KPT IMHS+NHQTSHRPPPYRR+VPRYHTKAGGGGG HCCLKCICICYIFLCFF
Sbjct: 1   MEESPPKPTNIMHSDNHQTSHRPPPYRRHVPRYHTKAGGGGGGHCCLKCICICYIFLCFF 60

Query: 61  IFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFI 120
           I VLLSLAYFIVTFYRPKIPSYKV+DFNVHVFNVK DFSLYTEFIVIVESNNPNENIDFI
Sbjct: 61  IVVLLSLAYFIVTFYRPKIPSYKVSDFNVHVFNVKPDFSLYTEFIVIVESNNPNENIDFI 120

Query: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSGQ 180
           YGRGSSVSVLYNDSMLCAGKIPNFRQPP NVTD+SILLSGVSEFGSG+QEALMQNRHSG+
Sbjct: 121 YGRGSSVSVLYNDSMLCAGKIPNFRQPPMNVTDMSILLSGVSEFGSGMQEALMQNRHSGK 180

Query: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVD+LSPNK VGILSSNYTYGATL
Sbjct: 181 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDDLSPNKKVGILSSNYTYGATL 235

[Close]

BLAST of Carg19116 vs. ExPASy TrEMBL
Match: A0A1S3C0T7 (NDR1/HIN1-Like protein 3-like OS=Cucumis melo OX=3656 GN=LOC103495521 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.6e-91
Identity = 176/236 (74.58%), Postives = 201/236 (85.17%), Query Frame = 0


Query: 3   ESPTKPTYIMHS-NNHQTSHRPPPYRRNVPRYHTKA---GGGGGSHCCLKCICICYIFLC 62
           E+P KP Y+M S N+HQTS RPPPYRRNVPRY +KA   GGGGG  CCLKCIC  Y F+ 
Sbjct: 2   EAPPKPKYVMLSDNHHQTSLRPPPYRRNVPRYQSKAHGGGGGGGVGCCLKCICCFYCFIF 61

Query: 63  FFIFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENID 122
           F IF L    YF+  +Y P+IPSYKV++F+VH FNVK DFSLYTEFIVIV+++NPN+NI 
Sbjct: 62  FLIFALFGFGYFLYYYYDPQIPSYKVSNFSVHAFNVKPDFSLYTEFIVIVKADNPNQNIG 121

Query: 123 FIYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHS 182
           FIYG+ SSVSV+Y+ S LC+GKIPNFRQP +NVTDISILLSG SEFGSGLQEALMQNRHS
Sbjct: 122 FIYGKNSSVSVMYSKSELCSGKIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHS 181

Query: 183 GQIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGAT 235
           G+IPLLV VKVPVTVVIG L+L+K+NVLVNCSLVVDNLSPNK VGILSSNYTYGA+
Sbjct: 182 GKIPLLVEVKVPVTVVIGSLSLKKVNVLVNCSLVVDNLSPNKKVGILSSNYTYGAS 237

[Close]

BLAST of Carg19116 vs. ExPASy TrEMBL
Match: A0A0A0K2B4 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G047380 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.5e-90
Identity = 173/236 (73.31%), Postives = 200/236 (84.75%), Query Frame = 0


Query: 3   ESPTKPTYIMHS-NNHQTSHRPPPYRRNVPRYHTKA--GGGGGSHCCLKCICICYIFLCF 62
           E+P KP Y+M S ++HQ S RPPPYRRNVPRYH+KA  GGGGG  CCLKCIC CY F+ F
Sbjct: 2   EAPPKPKYVMLSDDHHQASLRPPPYRRNVPRYHSKANGGGGGGVGCCLKCICCCYCFIFF 61

Query: 63  FIFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDF 122
            IF L  L YF+  +Y P++PSYKV+DF+VH FNVK DFSLYTEFIVIV+++NPN NI F
Sbjct: 62  LIFALFGLGYFLFYYYNPQVPSYKVSDFSVHAFNVKSDFSLYTEFIVIVKADNPNANIGF 121

Query: 123 IYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHSG 182
           +YG+ SSVSV+Y+ S LC+G+IPNFRQP +NVTDISILLSG SEFGSGLQEALMQNRHSG
Sbjct: 122 VYGKDSSVSVMYSKSELCSGQIPNFRQPSKNVTDISILLSGNSEFGSGLQEALMQNRHSG 181

Query: 183 QIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           +IPLLV VKVPVTVVIG L+L+K+NV VNCSLVVD LSPNK V ILSSNYTYGA+L
Sbjct: 182 KIPLLVKVKVPVTVVIGSLSLKKVNVFVNCSLVVDKLSPNKKVEILSSNYTYGASL 237

[Close]

BLAST of Carg19116 vs. ExPASy TrEMBL
Match: A0A6J1I215 (NDR1/HIN1-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC111468301 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.6e-90
Identity = 172/237 (72.57%), Postives = 201/237 (84.81%), Query Frame = 0


Query: 1   MEESPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGG--SHCCLKCICICYIFLC 60
           M+ +P KP Y+M S+NHQ S RPPPYRR+VPRYH+KA GGGG  + CCLKCIC CY FL 
Sbjct: 1   MDTAP-KPKYVMLSDNHQGSLRPPPYRRHVPRYHSKAQGGGGGCAGCCLKCICCCYCFLL 60

Query: 61  FFIFVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENID 120
           F IF L  LAY + ++Y P+IPSY+V+ FNV VF+VK DFSLYTEFIVIV ++NPN+NID
Sbjct: 61  FLIFSLFGLAYVLFSYYNPQIPSYEVSSFNVRVFDVKPDFSLYTEFIVIVTADNPNQNID 120

Query: 121 FIYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQNRHS 180
           F+YG+GS VSVLYN S+LC G IPNFRQP +NVTDISI L+G SEFGSGLQEALMQNRHS
Sbjct: 121 FVYGKGSYVSVLYNQSVLCTGDIPNFRQPSKNVTDISISLTGNSEFGSGLQEALMQNRHS 180

Query: 181 GQIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGATL 236
           G+IPLLV VKVPVT+VIG L+L+K+NV VNCSL+VDNLSP+K VGILSSNYTYGA L
Sbjct: 181 GRIPLLVVVKVPVTIVIGRLSLKKVNVFVNCSLIVDNLSPDKKVGILSSNYTYGAAL 236

[Close]

BLAST of Carg19116 vs. TAIR 10
Match: AT1G54540.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-27
Identity = 78/241 (32.37%), Postives = 127/241 (52.70%), Query Frame = 0


Query: 2   EESPTKPTYIMHSNNHQTSHRPP------PYRRNVPRYHTKAGGGGGSHCCLKCICICYI 61
           ++    P   M +N  +T+   P      P +R +P            + C K  C   +
Sbjct: 3   DQQKIHPVLQMEANKTKTTTPAPGKTVLLPVQRPIP---PPVIPSKNRNMCCKIFC-WVL 62

Query: 62  FLCFFIFVLLSLAYFIVTF-YRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPN 121
            L     + L++A  +V F + PK+PSY+V    V    +  D SL  EF V + + NPN
Sbjct: 63  SLLVIALIALAIAVAVVYFVFHPKLPSYEVNSLRVTNLGINLDLSLSAEFKVEITARNPN 122

Query: 122 ENIDFIYGRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALMQ 181
           E I   Y +G  + V Y+ + LC G IP F Q  RNVT +++ L+G +++G+ +  AL Q
Sbjct: 123 EKIGIYYEKGGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLNVALTGRAQYGNTVLAALQQ 182

Query: 182 NRHSGQIPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTYGAT 236
            + +G++PL + V  PV + +G L ++KI +L +C LVVD+LS N  + I +S+ ++ A 
Sbjct: 183 QQQTGRVPLDLKVNAPVAIKLGNLKMKKIRILGSCKLVVDSLSTNNNINIKASDCSFKAK 239

[Close]

BLAST of Carg19116 vs. TAIR 10
Match: AT5G36970.1 (NDR1/HIN1-like 25 )

HSP 1 Score: 112.1 bits (279), Expect = 6.2e-25
Identity = 71/231 (30.74%), Postives = 112/231 (48.48%), Query Frame = 0


Query: 3   ESPTKPTY-IMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFFI 62
           E+P  PT  ++   + ++ H  P   +            G   C  +C+C   + L   I
Sbjct: 14  EAPPHPTAPLVPRGSSRSEHGDPTKTQQAAPLDPPREKKGSRSCWCRCVCYTLLVLFLLI 73

Query: 63  FVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIY 122
            ++ ++   +   +RPK P Y +    +  F + QD SL T F V + + NPNE I   Y
Sbjct: 74  VIVGAIVGILYLVFRPKFPDYNIDRLQLTRFQLNQDLSLSTAFNVTITAKNPNEKIGIYY 133

Query: 123 GRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEALM-QNRHSGQ 182
             GS +SVLY  + +  G +P F Q   N T I + ++G ++  + L   L  Q R +G 
Sbjct: 134 EDGSKISVLYMQTRISNGSLPKFYQGHENTTIILVEMTGFTQNATSLMTTLQEQQRLTGS 193

Query: 183 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSNYTY 232
           IPL + V  PV + +G L L K+  LV C + VD+L+ N  + + SSN  Y
Sbjct: 194 IPLRIRVTQPVRIKLGKLKLMKVRFLVRCGVSVDSLAANSVIRVRSSNCKY 244

[Close]

BLAST of Carg19116 vs. TAIR 10
Match: AT1G65690.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-23
Identity = 71/228 (31.14%), Postives = 112/228 (49.12%), Query Frame = 0


Query: 5   PTKPTYIMHSNNHQTSHRPP---PYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFFI 64
           PT P  ++   + ++ H  P   P  +   R+   A       CC +C C  + FL   +
Sbjct: 20  PTAP--LVPRGSSRSEHGDPSKVPLNQRPQRFVPLAPPKKRRSCCCRCFCYTFCFLLLLV 79

Query: 65  FVLLSLAYFIVTFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIY 124
             + +    +   ++PK+P Y +    +  F + QD SL T F V + + NPNE I   Y
Sbjct: 80  VAVGASIGILYLVFKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTITAKNPNEKIGIYY 139

Query: 125 GRGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVSEFGSGLQEAL-MQNRHSGQ 184
             GS ++V Y +  L  G +P F Q   N T I + ++G ++  SGL+  L  Q + +G 
Sbjct: 140 EDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGN 199

Query: 185 IPLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNLSPNKTVGILSSN 229
           IPL + V  PV V  G L L ++  LV C + VD+L+ N  + I SS+
Sbjct: 200 IPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLATNNVIKIQSSS 245

[Close]

BLAST of Carg19116 vs. TAIR 10
Match: AT2G27080.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-17
Identity = 64/222 (28.83%), Postives = 105/222 (47.30%), Query Frame = 0


Query: 4   SPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFFIFV 63
           +P   TY++     Q    PPP   N  R+   +        C  C C  ++   F + V
Sbjct: 31  APPPSTYVIQVPKDQIYRIPPP--ENAHRFEQLSRKKTNRSNCRCCFC-SFLAAVFILIV 90

Query: 64  LLSLAYFIV-TFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYG 123
           L  +++ ++   YRP+ P Y +  F+V   N+     +   F V V S N N  I   Y 
Sbjct: 91  LAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYE 150

Query: 124 RGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVS-EFGSGLQEALMQNRHSGQI 183
           + SSV V YND  +  G +P F QP +NVT + ++LSG   +  SG+++ +        +
Sbjct: 151 KESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTV 210

Query: 184 PLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNL-SPNKTV 223
           P  + +K PV +  G +    + V V+C + VD L +P++ V
Sbjct: 211 PFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRIV 249

[Close]

BLAST of Carg19116 vs. TAIR 10
Match: AT2G27080.2 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-17
Identity = 64/222 (28.83%), Postives = 105/222 (47.30%), Query Frame = 0


Query: 4   SPTKPTYIMHSNNHQTSHRPPPYRRNVPRYHTKAGGGGGSHCCLKCICICYIFLCFFIFV 63
           +P   TY++     Q    PPP   N  R+   +        C  C C  ++   F + V
Sbjct: 31  APPPSTYVIQVPKDQIYRIPPP--ENAHRFEQLSRKKTNRSNCRCCFC-SFLAAVFILIV 90

Query: 64  LLSLAYFIV-TFYRPKIPSYKVADFNVHVFNVKQDFSLYTEFIVIVESNNPNENIDFIYG 123
           L  +++ ++   YRP+ P Y +  F+V   N+     +   F V V S N N  I   Y 
Sbjct: 91  LAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYE 150

Query: 124 RGSSVSVLYNDSMLCAGKIPNFRQPPRNVTDISILLSGVS-EFGSGLQEALMQNRHSGQI 183
           + SSV V YND  +  G +P F QP +NVT + ++LSG   +  SG+++ +        +
Sbjct: 151 KESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTV 210

Query: 184 PLLVAVKVPVTVVIGGLALRKINVLVNCSLVVDNL-SPNKTV 223
           P  + +K PV +  G +    + V V+C + VD L +P++ V
Sbjct: 211 PFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRIV 249

The following BLAST results are available for this feature:

BLAST of Carg19116 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930831.1	2.1e-128	100.00	NDR1/HIN1-like protein 6 [Cucurbita moschata] >KAG7022913.1 NDR1/HIN1-like prote...	[more]
XP_023531997.1	1.8e-122	97.02	NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022988931.1	3.7e-120	94.04	NDR1/HIN1-like protein 6 [Cucurbita maxima]	[more]
XP_038888833.1	1.1e-92	75.74	NDR1/HIN1-like protein 6 [Benincasa hispida]	[more]
XP_008455332.1	1.8e-90	74.58	PREDICTED: NDR1/HIN1-Like protein 3-like [Cucumis melo]	[more]

BLAST of Carg19116 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LD98	8.2e-22	31.14	NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1	[more]
Q9ZVD2	3.9e-16	28.83	NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1	[more]

BLAST of Carg19116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ES08	1.0e-128	100.00	NDR1/HIN1-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111437198 PE=4 SV=1	[more]
A0A6J1JIL7	1.8e-120	94.04	NDR1/HIN1-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC111486138 PE=4 SV=1	[more]
A0A1S3C0T7	8.6e-91	74.58	NDR1/HIN1-Like protein 3-like OS=Cucumis melo OX=3656 GN=LOC103495521 PE=4 SV=1	[more]
A0A0A0K2B4	1.5e-90	73.31	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G047380 PE=4 ...	[more]
A0A6J1I215	5.6e-90	72.57	NDR1/HIN1-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC111468301 PE=4 SV=1	[more]

BLAST of Carg19116 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54540.1	1.0e-27	32.37	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G36970.1	6.2e-25	30.74	NDR1/HIN1-like 25	[more]
AT1G65690.1	5.8e-23	31.14	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G27080.1	2.8e-17	28.83	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G27080.2	2.8e-17	28.83	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 109..209 e-value: 1.2E-7 score: 32.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 37..232
None	No IPR available	PANTHER	PTHR31852:SF176	HIN1-LIKE PROTEIN	coord: 37..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19116-RA	Carg19116-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane