Carg19115 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19115
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
Location	Carg_Chr11: 12424594 .. 12427146 (-)
RNA-Seq Expression	Carg19115
Synteny	Carg19115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGCTTTTTCCCGACAAAAATCGATCATATACTTTTGATCTCTAAATTTTCTGTAACCGTCCAAGCCCACTACTAACAAATATTGTCTGCATTGCGGAAAATTCCCTACTGCTGCCTCCTGGAGGAGTTTGAGCCGTGTCTCAGTCCCAGTGTGTCTGATCATCCTCTTGGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTTACCAACTAGCTAATCAGACGTGAGCCCTTCCTCGGGCGGATTCCTCTTTTTGCTCCTCAGCGTACGGGGTATTAGCAGCCATTTCCAGCTGTTGTTTCCCTCCAAAGGACAGGTTCTTACACGTAACTCACCCGTCCGCTACTGGAAACACCACTTCCTGTCCGACTTGCATGTGTTAAGCATGCCACCAGCGTTCATCTTGAGCCAGGATCGAACTCTCCATGAGATTCATAGTTGCATTACTTGTAGCTTCCTTGTTCATAGACAAAGCTGATTCGTGTTACGTACCACTGTTACCTTGAGGGGAAGGTCTAAGGAGGACAATATCTGCTTGCAGTGTGCTTGAGTTGTAACGCTTTCATAAAAGTAACCGGTTCGGGATGCGGGTAGACTCTTTAGGCTCGTTTTGAGTTAGAGCTCGGCTTGTTAGGGCACTTTTTCATCTTGAAACGTCTCGAGAGAGAGACAAACAAAAGATCCTATGACTTATTCCTTAAATCAATGATGTTTCAGAGTATATTTTGAATGTTGTCTGCGACAATAATTTCTCTTCTATACCCTCGTTTGGTACCAAAAACACAGAGCAAATAGATGGAAATGGTCCATGGCATAGGCCATTTATGATAGAGACAAAGATTCATGACACTTTCAGCTAGCTCTCAGAAACAACATTAATGCCATTCATATCATACTGAGGATTCAAATTTATTACCCTCTCTCTAAAGATTTCAAAATTTTCGAGTGCGCGCTTTTGTATGAGACAGACAGTTTTACACGGTTGGACGTATGAGAGAGAAATTATAAAACTACGGAACATAATTCAAATGATCATATTGTCACGTAAACTGATGTATTCACAGAGCTTCTTCGGACCCTAAAGAACTCACCACAGTCCTCCGTGAGAGCTCTAATCCTAATCTTCGAACCATCCGTGGCTTGAGAATATCCCTCCATGAGCAAGCCCTCGAGGCATGTGGTCACTAGAAAACGAAAGGAAATGTATAACAGTCCAAGTCCACTGCTAGTAAATATTGTCCATTTTGGCTAGTTACATATCATCGTAAGCCATACGGTTTTAAAATGCATCTACTCTGGAGAAGATCTAGCCCTACTCCAACTAGTGCTTTGAACCATCCAGTAACGGGCTCTAATACCATTTATAACAATCCAAGCCTACTACTAGTAGATATTATCCGCTTTGGCCTGTTAATTATTGTTGTCAACCTCACAGTTTCAAAACGCGTCTGTTAGGAAGAAGTTTCAACACCCTTATAAAAAATGTTTCGTTCCCCTCTCCGACCGACGTGGGTTCTCACAAAATAAAAGAAGTGAAAATGCCACTAGAGTTGCAACGAAAATGCTATTCTAAAACGCTACGAAAAGTAATATTTCTCATCGTGTTTATATCCCGTGATTAAGTGATTATCAGAGAACAGATAACGATTTTTAAAACAAACAATAAAATTATAACGATCTCGTTGAATAATTGGTCGGGTTTTACTCCTTTTGTTTGCATTTAATGGTGCATTGATTGTTCTTCACGTTTAAGGAGACACTTTCTATTCTGATCTTGTTTTTTTTCTCCTTCTTTGGTGGTGTTGCTTTTGGTAGCTCGGATTACCTGTGACCTCATCACTATAACTCAACAAAATCTTGCCTTTTGCTTGTGACTTGCTTCAATTCTCTCTCTTTTCCTTCAAAATATCATGCCTTTATATATCCTCTTCATTTCCTTTGCTTACCCACTTAAAAAGGAACCATTTTTCTTCACTTTTTACTCAAAAACCATGAAGGGTTTGCCTTGCTTCTCTCTAATCTTCATTGCTTTCTTGTTATTCCCGATACCCATTTCGTCCCGACGCATTTTTCAGCTAAATTCACGTACTCACACTTACCTTTCTTGTTTCTTACTGATATCTCACATTAGTTGGAGAGGAGAACGAAACACCATTTATAAGCGAAAACCCGAAAACCTTGAGGGGAAACTCGAAGGGAAAAACCCAAAGAGGACAGTATCTGGATGAGTATCGGTGCTAGTAGATATTGTCCTCCTTGAGCTTCCCTCAATGTTTTTAAAACGGGTCTAGTAGGGAGAGGTTTCCACACGCTTATAAAAAGTGTTTCGTTCTCCTCTCCAATGTGGGATATGAGATATCACATTTCTTTGGTGCAAACATGGACTAACCTTCATGACCCTTCCATGCAGGTCGTGGCCACCACCACAAGGCGGCAGTCGACTCGGTCAGGGCGGTGAGAGCTCAGCCGAAAGGGAAAGTCGTCTGGGCGCCGTAACGCAGGCAGAAGTGAGGCACGCGGCGATGATAGGGAAGCGTAGATAA

mRNA sequence

ATGGCTAGCTTTTTCCCGACAAAAATCGATCATATACTTTTGATCTCTAAATTTTCTGAGTTTGAGCCGTGTCTCAGTCCCAGTGTGTCTGATCATCCTCTTGGACCAGCTACTGATCATCGTCTTGCGTACGGGGTATTAGCAGCCATTTCCAGCTGTTGTTTCCCTCCAAAGGACAGAGCTTCTTCGGACCCTAAAGAACTCACCACAGTCCTCCGTGAGAGCTCTAATCCTAATCTTCGAACCATCCGTGGCTTGAGAATATCCCTCCATGAGCAAGCCCTCGAGGCATGTGTTGGAGAGGAGAACGAAACACCATTTATAAGCGAAAACCCGAAAACCTTGAGGGGAAACTCGAAGGGAAAAACCCAAAGAGGACAGTATCTGGATGAGTATCGGTCGTGGCCACCACCACAAGGCGGCAGTCGACTCGGTCAGGGCGGTGAGAGCTCAGCCGAAAGGGAAAGTCGTCTGGGCGCCGTAACGCAGGCAGAAGTGAGGCACGCGGCGATGATAGGGAAGCGTAGATAA

Coding sequence (CDS)

ATGGCTAGCTTTTTCCCGACAAAAATCGATCATATACTTTTGATCTCTAAATTTTCTGAGTTTGAGCCGTGTCTCAGTCCCAGTGTGTCTGATCATCCTCTTGGACCAGCTACTGATCATCGTCTTGCGTACGGGGTATTAGCAGCCATTTCCAGCTGTTGTTTCCCTCCAAAGGACAGAGCTTCTTCGGACCCTAAAGAACTCACCACAGTCCTCCGTGAGAGCTCTAATCCTAATCTTCGAACCATCCGTGGCTTGAGAATATCCCTCCATGAGCAAGCCCTCGAGGCATGTGTTGGAGAGGAGAACGAAACACCATTTATAAGCGAAAACCCGAAAACCTTGAGGGGAAACTCGAAGGGAAAAACCCAAAGAGGACAGTATCTGGATGAGTATCGGTCGTGGCCACCACCACAAGGCGGCAGTCGACTCGGTCAGGGCGGTGAGAGCTCAGCCGAAAGGGAAAGTCGTCTGGGCGCCGTAACGCAGGCAGAAGTGAGGCACGCGGCGATGATAGGGAAGCGTAGATAA

Protein sequence

MASFFPTKIDHILLISKFSEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDRASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEACVGEENETPFISENPKTLRGNSKGKTQRGQYLDEYRSWPPPQGGSRLGQGGESSAERESRLGAVTQAEVRHAAMIGKRR

Homology

[Close]

BLAST of Carg19115 vs. NCBI nr
Match: KAG7022912.1 (hypothetical protein SDJN02_16648, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.1 bits (910), Expect = 3.4e-94
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MASFFPTKIDHILLISKFSEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR 60
           MASFFPTKIDHILLISKFSEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR
Sbjct: 1   MASFFPTKIDHILLISKFSEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR 60

Query: 61  ASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEACVGEENETPFISENPKTLRGNSK 120
           ASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEACVGEENETPFISENPKTLRGNSK
Sbjct: 61  ASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEACVGEENETPFISENPKTLRGNSK 120

Query: 121 GKTQRGQYLDEYRSWPPPQGGSRLGQGGESSAERESRLGAVTQAEVRHAAMIGKRR 177
           GKTQRGQYLDEYRSWPPPQGGSRLGQGGESSAERESRLGAVTQAEVRHAAMIGKRR
Sbjct: 121 GKTQRGQYLDEYRSWPPPQGGSRLGQGGESSAERESRLGAVTQAEVRHAAMIGKRR 176

[Close]

BLAST of Carg19115 vs. NCBI nr
Match: KAG6589212.1 (Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-10
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 60 RASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEAC 99
          +ASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEAC
Sbjct: 61 KASSDPKELTTVLRESSNPNLRTIRGLRISLHEQALEAC 99

[Close]

BLAST of Carg19115 vs. NCBI nr
Match: KAG8473527.1 (hypothetical protein CXB51_035663 [Gossypium anomalum])

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-09
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 19  SEFEPCLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR 61
           +EF  CLSPSV++HPLGPATDHRL Y VL A+SSCC PPK R
Sbjct: 147 AEFGSCLSPSVANHPLGPATDHRLVYRVLVAVSSCCSPPKGR 188

[Close]

BLAST of Carg19115 vs. NCBI nr
Match: MBA0642196.1 (hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-09
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 24 CLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR 61
          CLSPSV+DHPLG ATDHRLAYGVLA ISSCC PPK R
Sbjct: 34 CLSPSVADHPLGLATDHRLAYGVLAVISSCCSPPKGR 70

[Close]

BLAST of Carg19115 vs. NCBI nr
Match: GEV09927.1 (hypothetical chloroplast RF2, chloroplastic [Tanacetum cinerariifolium])

HSP 1 Score: 68.6 bits (166), Expect = 6.3e-08
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 14  LISKFSEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLA 68
           ++ +  E  PCLSPSV+DHPLGPATDHRL                         AYGVLA
Sbjct: 131 VLPRLLESRPCLSPSVADHPLGPATDHRLVKLLPHQLANQTRDPPRADSSFCSSAYGVLA 190

[Close]

BLAST of Carg19115 vs. ExPASy TrEMBL
Match: A0A7J8TVE3 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_026629 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 24 CLSPSVSDHPLGPATDHRLAYGVLAAISSCCFPPKDR 61
          CLSPSV+DHPLG ATDHRLAYGVLA ISSCC PPK R
Sbjct: 34 CLSPSVADHPLGLATDHRLAYGVLAVISSCCSPPKGR 70

[Close]

BLAST of Carg19115 vs. ExPASy TrEMBL
Match: A0A6A5N1F4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00035386 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-08
Identity = 36/67 (53.73%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 19 SEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSC 61
          SE  PCLSPSV+DHPLGPATDHRL                         AYGVLAA+SSC
Sbjct: 13 SESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSC 72

[Close]

BLAST of Carg19115 vs. ExPASy TrEMBL
Match: A0A6D2LA75 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS25398 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-08
Identity = 36/67 (53.73%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 19  SEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSC 61
           SE  PCLSPSV+DHPLGPATDHRL                         AYGVLAA+SSC
Sbjct: 120 SESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSC 179

[Close]

BLAST of Carg19115 vs. ExPASy TrEMBL
Match: A0A3P6D4D0 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45666Z PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 35/66 (53.03%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 20  EFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSCC 61
           E  PCLSPSV+DHPLGPATDHRL                         AYGVLAA+SSCC
Sbjct: 158 ESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCC 217

[Close]

BLAST of Carg19115 vs. ExPASy TrEMBL
Match: A0A6D2I544 (Uncharacterized protein (Fragment) OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10043 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 35/65 (53.85%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 19  SEFEPCLSPSVSDHPLGPATDHRL-------------------------AYGVLAAISSC 59
           SE  PCLSPSV+DHPLGPATDHRL                         AYGVLAA+SSC
Sbjct: 120 SESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSC 179

The following BLAST results are available for this feature:

BLAST of Carg19115 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022912.1	3.4e-94	100.00	hypothetical protein SDJN02_16648, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589212.1	1.0e-10	97.44	Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG8473527.1	3.4e-09	73.81	hypothetical protein CXB51_035663 [Gossypium anomalum]	[more]
MBA0642196.1	4.4e-09	86.49	hypothetical protein [Gossypium klotzschianum]	[more]
GEV09927.1	6.3e-08	44.30	hypothetical chloroplast RF2, chloroplastic [Tanacetum cinerariifolium]	[more]

BLAST of Carg19115 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8TVE3	2.1e-09	86.49	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_026629 PE=4...	[more]
A0A6A5N1F4	4.0e-08	53.73	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00035386 PE=3 SV=1	[more]
A0A6D2LA75	4.0e-08	53.73	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS25398 ...	[more]
A0A3P6D4D0	1.2e-07	53.03	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45666Z PE=4 S...	[more]
A0A6D2I544	1.2e-07	53.85	Uncharacterized protein (Fragment) OS=Microthlaspi erraticum OX=1685480 GN=MERR_...	[more]

BLAST of Carg19115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19115-RA	Carg19115-RA	mRNA