Carg19100 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19100
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Wound-responsive family protein
Location	Carg_Chr11: 12364388 .. 12364666 (+)
RNA-Seq Expression	Carg19100
Synteny	Carg19100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTACCTGAACAGAGTCGGAATGGCGGCGAGCGTGGCGGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTTTTCGACAAGGTCGGAAACTTTTGTCTTCCGGTGAAAATCCGGCGGATCTACGGCCTCTTTCGAGTTTGGTTGGATCGGAAGGTCCTGAAGCCGTCCAGAGCTTTGACGCCGCCGAGAGGATAGCGCAGAGCGAGGAATCGCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGTTGA

mRNA sequence

ATGAGTTACCTGAACAGAGTCGGAATGGCGGCGAGCGTGGCGGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTTTTCGACAAGGTCGGAAACTTTTGTCTTCCGGTGAAAATCCGGCGGATCTACGGCCTCTTTCGAGTTTGGTTGGATCGGAAGGTCCTGAAGCCGTCCAGAGCTTTGACGCCGCCGAGAGGATAGCGCAGAGCGAGGAATCGCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGTTGA

Coding sequence (CDS)

ATGAGTTACCTGAACAGAGTCGGAATGGCGGCGAGCGTGGCGGTGGCTCAAGGCCACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTTTTCGACAAGGTCGGAAACTTTTGTCTTCCGGTGAAAATCCGGCGGATCTACGGCCTCTTTCGAGTTTGGTTGGATCGGAAGGTCCTGAAGCCGTCCAGAGCTTTGACGCCGCCGAGAGGATAGCGCAGAGCGAGGAATCGCTCCGGCGAGTCATGTACTTGAACTGTTGGGGCCAGGGTTGA

Protein sequence

MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEGPEAVQSFDAAERIAQSEESLRRVMYLNCWGQG

Homology

[Close]

BLAST of Carg19100 vs. NCBI nr
Match: KAG6589197.1 (hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022897.1 hypothetical protein SDJN02_16633, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 2.4e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
          PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG
Sbjct: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19100 vs. NCBI nr
Match: KAG7011951.1 (hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKS RQGR+LLSSGENPADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
          P AV+S DA ER+AQ+E+SLRRVMYLNCWGQG
Sbjct: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19100 vs. NCBI nr
Match: KAG6572339.1 (hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.3 bits (425), Expect = 3.1e-38
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKS RQGR+LLSSGENPADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
          P AV++ DA ER+AQ+E+SLRRVMYLNCWGQG
Sbjct: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19100 vs. NCBI nr
Match: KAE8645762.1 (hypothetical protein Csa_020269 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.2e-36
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKS RQGR+LLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
            +V+S D  ERIAQSE+SLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19100 vs. NCBI nr
Match: KAA0031600.1 (wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 2.2e-36
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKS RQGR+LLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
            +V+S D  ERIAQSE+SLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19100 vs. ExPASy TrEMBL
Match: A0A5A7SLJ2 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003700 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKS RQGR+LLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
            +V+S D  ERIAQSE+SLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19100 vs. ExPASy TrEMBL
Match: A0A0A0K6Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKS RQGR+LLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
            +V+S D  ERIAQSE+SLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19100 vs. ExPASy TrEMBL
Match: A0A2N9HZV9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.8e-21
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV MAA VAV QG T+ GHKWKSG+KS +  ++ L SG + +DLRPLS ++GS+ 
Sbjct: 1  MSYLNRVWMAAGVAVVQGKTDQGHKWKSGIKSVQLRKQKLFSGNDTSDLRPLSGMIGSDF 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
             + + DA ER   ++ESLRRVMYLNCWGQG
Sbjct: 61 QGFLGNSDADERPMHADESLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19100 vs. ExPASy TrEMBL
Match: A0A5N6RB28 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.7e-21
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNR+ MAASVAV QGHT+ G K K GLKS + G++   SG + ADLRP+S ++G + 
Sbjct: 1  MSYLNRIWMAASVAVVQGHTDQGRKVKPGLKSLQLGKRKFFSGSDSADLRPISGMIGLDF 60

Query: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
             + S DA ER  Q+EESLRRVMYLNCWGQG
Sbjct: 61 AGFLGSSDADERPRQAEESLRRVMYLNCWGQG 92

[Close]

BLAST of Carg19100 vs. ExPASy TrEMBL
Match: A0A2J6L919 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_3X40041 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.4e-20
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60
          MSYLNRV M A VAV  GHT+ GHK KSG+KSF+QG+K  +S  +PADLRPLS +V S+ 
Sbjct: 1  MSYLNRVWMTAGVAVVNGHTDQGHKLKSGIKSFQQGKKAFTSSTDPADLRPLSGVVSSD- 60

Query: 61 PEAVQSF-DAAERIAQSEESLRRVMYLNCWGQ 92
             V  F    ER+ QS++SLR+VMYLNCWGQ
Sbjct: 61 ---VGGFVGGEERMKQSDDSLRQVMYLNCWGQ 88

[Close]

BLAST of Carg19100 vs. TAIR 10
Match: AT4G28240.1 (Wound-responsive family protein )

HSP 1 Score: 67.0 bits (162), Expect = 9.0e-12
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSS--LVGS 60
          MSYLN+V MAAS    QG+ + G K KSGL S  + ++ LSS     DLRPL++  L G 
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSS-----DLRPLAAADLTGD 60

Query: 61 EGPEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 93
            P   +   ++   +  +ESLR+VMYLNCW QG
Sbjct: 61 SLPSEERRRTSS---STPDESLRQVMYLNCWAQG 86

The following BLAST results are available for this feature:

BLAST of Carg19100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589197.1	2.4e-43	100.00	hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011951.1	1.4e-38	90.22	hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6572339.1	3.1e-38	89.13	hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8645762.1	2.2e-36	88.04	hypothetical protein Csa_020269 [Cucumis sativus]	[more]
KAA0031600.1	2.2e-36	88.04	wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-res...	[more]

BLAST of Carg19100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLJ2	1.1e-36	88.04	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K6Z3	1.1e-36	88.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1	[more]
A0A2N9HZV9	2.8e-21	59.78	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1	[more]
A0A5N6RB28	3.7e-21	60.87	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1	[more]
A0A2J6L919	2.4e-20	60.87	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_3X40041 PE=4 SV=1	[more]

BLAST of Carg19100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28240.1	9.0e-12	45.74	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 9..91 e-value: 1.5E-16 score: 61.2
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..92
None	No IPR available	PANTHER	PTHR33090:SF38	DUF3774 DOMAIN PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19100-RA	Carg19100-RA	mRNA