Carg19097 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM Homology
BLAST of Carg19097 vs. NCBI nr
Match: KAG7022894.1 (hypothetical protein SDJN02_16630, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 220.7 bits (561), Expect = 6.3e-54 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of Carg19097 vs. NCBI nr
Match: KAG6589192.1 (putative GPI-anchored protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52 Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0
BLAST of Carg19097 vs. NCBI nr
Match: XP_022930698.1 (transcription factor MYB102-like [Cucurbita moschata]) HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52 Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0
BLAST of Carg19097 vs. NCBI nr
Match: XP_023531401.1 (transcription factor MYB41-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 184.9 bits (468), Expect = 3.9e-43 Identity = 99/119 (83.19%), Postives = 102/119 (85.71%), Query Frame = 0
BLAST of Carg19097 vs. NCBI nr
Match: XP_022989033.1 (transcription factor MYB41-like [Cucurbita maxima]) HSP 1 Score: 152.5 bits (384), Expect = 2.1e-33 Identity = 85/118 (72.03%), Postives = 95/118 (80.51%), Query Frame = 0
BLAST of Carg19097 vs. ExPASy Swiss-Prot
Match: Q9LDR8 (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 5.1e-06 Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0
BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A6J1EW33 (transcription factor MYB102-like OS=Cucurbita moschata OX=3662 GN=LOC111437095 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52 Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0
BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A6J1JP23 (transcription factor MYB41-like OS=Cucurbita maxima OX=3661 GN=LOC111486217 PE=4 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 1.0e-33 Identity = 85/118 (72.03%), Postives = 95/118 (80.51%), Query Frame = 0
BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A6J1I1S0 (transcription factor MYB41-like OS=Cucurbita maxima OX=3661 GN=LOC111468244 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29 Identity = 83/137 (60.58%), Postives = 96/137 (70.07%), Query Frame = 0
BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A6J1GMR8 (transcription factor MYB41 OS=Cucurbita moschata OX=3662 GN=LOC111455392 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28 Identity = 82/137 (59.85%), Postives = 95/137 (69.34%), Query Frame = 0
BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A5A7SQ60 (Transcription factor MYB39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003770 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 4.0e-22 Identity = 77/140 (55.00%), Postives = 93/140 (66.43%), Query Frame = 0
BLAST of Carg19097 vs. TAIR 10
Match: AT4G21440.1 (MYB-like 102 ) HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07 Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0
BLAST of Carg19097 vs. TAIR 10
Match: AT4G05100.1 (myb domain protein 74 ) HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04 Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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