Carg19097 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19097
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor MYB102-like
Location	Carg_Chr11: 12345430 .. 12345768 (-)
RNA-Seq Expression	Carg19097
Synteny	Carg19097

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA

mRNA sequence

ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA

Coding sequence (CDS)

ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA

Protein sequence

MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM

Homology

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BLAST of Carg19097 vs. NCBI nr
Match: KAG7022894.1 (hypothetical protein SDJN02_16630, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.7 bits (561), Expect = 6.3e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF
Sbjct: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60

Query: 61  ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM
Sbjct: 61  ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 112

[Close]

BLAST of Carg19097 vs. NCBI nr
Match: KAG6589192.1 (putative GPI-anchored protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMI ITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF
Sbjct: 201 MDTLSQLLQPNEEFNNNTNSSMIPITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 260

Query: 61  ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFND 111
           ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFND
Sbjct: 261 ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFND 310

[Close]

BLAST of Carg19097 vs. NCBI nr
Match: XP_022930698.1 (transcription factor MYB102-like [Cucurbita moschata])

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMI ITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF
Sbjct: 180 MDTLSQLLQPNEEFNNNTNSSMIPITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 239

Query: 61  ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           ESVI+TPKSSPTPLNSSSTCINNSS+EDERDSFCSNFLQFEIPEGLDFNDLM
Sbjct: 240 ESVISTPKSSPTPLNSSSTCINNSSHEDERDSFCSNFLQFEIPEGLDFNDLM 291

[Close]

BLAST of Carg19097 vs. NCBI nr
Match: XP_023531401.1 (transcription factor MYB41-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 3.9e-43
Identity = 99/119 (83.19%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSG-------DDGLIP 60
           MDTLSQLLQPN+E NNNTNSSMI ITNFVE SNSQE+MNFLA NLSG       DDGL P
Sbjct: 200 MDTLSQLLQPNDEINNNTNSSMIPITNFVECSNSQENMNFLASNLSGDDVNHVYDDGLKP 259

Query: 61  MASDLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
            ASD GFESVITTPKSSPTPLNSSSTCINNS NEDERDSFCSNFLQFEIP+GLDF D M
Sbjct: 260 KASDFGFESVITTPKSSPTPLNSSSTCINNSCNEDERDSFCSNFLQFEIPQGLDFADFM 318

[Close]

BLAST of Carg19097 vs. NCBI nr
Match: XP_022989033.1 (transcription factor MYB41-like [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-33
Identity = 85/118 (72.03%), Postives = 95/118 (80.51%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMI ITNFVE SNSQE+MNFLA NLSGDD L+   +D+  
Sbjct: 201 MDTLSQLLQPNEEFNNNTNSSMIPITNFVECSNSQENMNFLASNLSGDDVLMNQVNDVYD 260

Query: 61  ESVITTPKSSPTP------LNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           +   + PK+S  P       NSSSTC+NNSSNEDERDSFCSNFLQFEIP+GLDF+D M
Sbjct: 261 DG--SQPKASDLPEITNDLQNSSSTCMNNSSNEDERDSFCSNFLQFEIPQGLDFDDFM 316

[Close]

BLAST of Carg19097 vs. ExPASy Swiss-Prot
Match: Q9LDR8 (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.1e-06
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 51  LIPMASDLGF---ESVITTPKSSPTPLNSSSTCINNS--SNEDERDSFCSNFLQFEIPEG 110
           L P  SD  F    SV+ TP SSP+P   +S+ IN+S  S EDE +S+CSN ++F+IP+ 
Sbjct: 283 LDPSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCSTEDEIESYCSNLMKFDIPDF 342

[Close]

BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A6J1EW33 (transcription factor MYB102-like OS=Cucurbita moschata OX=3662 GN=LOC111437095 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMI ITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF
Sbjct: 180 MDTLSQLLQPNEEFNNNTNSSMIPITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 239

Query: 61  ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           ESVI+TPKSSPTPLNSSSTCINNSS+EDERDSFCSNFLQFEIPEGLDFNDLM
Sbjct: 240 ESVISTPKSSPTPLNSSSTCINNSSHEDERDSFCSNFLQFEIPEGLDFNDLM 291

[Close]

BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A6J1JP23 (transcription factor MYB41-like OS=Cucurbita maxima OX=3661 GN=LOC111486217 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.0e-33
Identity = 85/118 (72.03%), Postives = 95/118 (80.51%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMI ITNFVE SNSQE+MNFLA NLSGDD L+   +D+  
Sbjct: 201 MDTLSQLLQPNEEFNNNTNSSMIPITNFVECSNSQENMNFLASNLSGDDVLMNQVNDVYD 260

Query: 61  ESVITTPKSSPTP------LNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           +   + PK+S  P       NSSSTC+NNSSNEDERDSFCSNFLQFEIP+GLDF+D M
Sbjct: 261 DG--SQPKASDLPEITNDLQNSSSTCMNNSSNEDERDSFCSNFLQFEIPQGLDFDDFM 316

[Close]

BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A6J1I1S0 (transcription factor MYB41-like OS=Cucurbita maxima OX=3661 GN=LOC111468244 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29
Identity = 83/137 (60.58%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLI-------- 60
           MDTLSQLLQPN+   NN N+S + I+ FVE  NSQE++NFL  NLSG+D L+        
Sbjct: 201 MDTLSQLLQPNDNV-NNANASSMPISRFVECPNSQENLNFLPSNLSGEDVLVNQPNYVYG 260

Query: 61  -----PMAS-----------DLGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCS 113
                P AS           +LGF+ VI+TPKSSPTPLNSSSTC+NN SSNEDERDS+CS
Sbjct: 261 ENGSNPTASNLPETWNDDVQNLGFDCVISTPKSSPTPLNSSSTCVNNSSSNEDERDSYCS 320

[Close]

BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A6J1GMR8 (transcription factor MYB41 OS=Cucurbita moschata OX=3662 GN=LOC111455392 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 82/137 (59.85%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLI-------- 60
           MDTLSQLLQPN+   N+ N+S + I+ F E+  SQE++NFL  NLSG D L+        
Sbjct: 201 MDTLSQLLQPNDNV-NDANASSMPISTFDEFPYSQENLNFLPSNLSGGDVLVNQPNYVYG 260

Query: 61  -----PMASD-----------LGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCS 113
                P ASD           LGF+ VI+TPKSSPTPLNSSSTC+NN SSNEDERDS+CS
Sbjct: 261 ENGSNPTASDLPEIWNNDVQNLGFDCVISTPKSSPTPLNSSSTCVNNSSSNEDERDSYCS 320

[Close]

BLAST of Carg19097 vs. ExPASy TrEMBL
Match: A0A5A7SQ60 (Transcription factor MYB39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003770 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.0e-22
Identity = 77/140 (55.00%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITN-FVEYSN-SQEHMNFLAPNLS------------ 60
           MD+LSQLLQPN+  NN  +SS++ I++ FV+ SN SQE++NFL  NL+            
Sbjct: 156 MDSLSQLLQPNDNVNNTNSSSVMPISSTFVDCSNTSQENLNFLPTNLNCGEDVLMNQHNY 215

Query: 61  --GDDGLIPMASD-----------LGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDS 113
             G DG  P AS+           LGF+SV    KSSPTPLNSSST +NN SSNEDE+DS
Sbjct: 216 MYGGDGSNPTASEILDISNNNAQTLGFDSV----KSSPTPLNSSSTYLNNSSSNEDEKDS 275

[Close]

BLAST of Carg19097 vs. TAIR 10
Match: AT4G21440.1 (MYB-like 102 )

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 51  LIPMASDLGF---ESVITTPKSSPTPLNSSSTCINNS--SNEDERDSFCSNFLQFEIPEG 110
           L P  SD  F    SV+ TP SSP+P   +S+ IN+S  S EDE +S+CSN ++F+IP+ 
Sbjct: 283 LDPSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCSTEDEIESYCSNLMKFDIPDF 342

[Close]

BLAST of Carg19097 vs. TAIR 10
Match: AT4G05100.1 (myb domain protein 74 )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 24  SITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGFESVITTPKSSPTPLN-SSSTCIN 83
           ++ N + Y +     NF+         L P  SD  F SV+TTP SSPTPLN SSST IN
Sbjct: 244 TVQNSLSYDDDCSKSNFV---------LEPYYSD--FASVLTTPSSSPTPLNSSSSTYIN 303

Query: 84  NS--SNEDERDSFCSN-----------FLQFE 102
           +S  S EDE++S+ S+           FLQF+
Sbjct: 304 SSTCSTEDEKESYYSDNITNYSFDVNGFLQFQ 324

The following BLAST results are available for this feature:

BLAST of Carg19097 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022894.1	6.3e-54	100.00	hypothetical protein SDJN02_16630, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589192.1	2.7e-52	99.09	putative GPI-anchored protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022930698.1	2.7e-52	97.32	transcription factor MYB102-like [Cucurbita moschata]	[more]
XP_023531401.1	3.9e-43	83.19	transcription factor MYB41-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989033.1	2.1e-33	72.03	transcription factor MYB41-like [Cucurbita maxima]	[more]

BLAST of Carg19097 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDR8	5.1e-06	48.44	Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1	[more]

BLAST of Carg19097 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EW33	1.3e-52	97.32	transcription factor MYB102-like OS=Cucurbita moschata OX=3662 GN=LOC111437095 P...	[more]
A0A6J1JP23	1.0e-33	72.03	transcription factor MYB41-like OS=Cucurbita maxima OX=3661 GN=LOC111486217 PE=4...	[more]
A0A6J1I1S0	1.2e-29	60.58	transcription factor MYB41-like OS=Cucurbita maxima OX=3661 GN=LOC111468244 PE=4...	[more]
A0A6J1GMR8	1.3e-28	59.85	transcription factor MYB41 OS=Cucurbita moschata OX=3662 GN=LOC111455392 PE=4 SV...	[more]
A0A5A7SQ60	4.0e-22	55.00	Transcription factor MYB39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Carg19097 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21440.1	3.6e-07	48.44	MYB-like 102	[more]
AT4G05100.1	1.7e-04	41.30	myb domain protein 74	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19097-RA	Carg19097-RA	mRNA