Carg19085 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19085
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cysteine-rich repeat secretory protein 38-like
Location	Carg_Chr11: 12294774 .. 12296081 (+)
RNA-Seq Expression	Carg19085
Synteny	Carg19085

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCGCCTCCAAGTCAGGTCAAATTCGAGAAGGTCACGAAGGACGATTCGTCACTAGAGACCGGTGTGTTTATAGTTGGATACAGATAAAAGAAAATATATTTGTTACCTAAATATTGGATACATAAACACAATATTCTTACCATTTTCCCTCTTGTACATCCAACAATGCACTTTTAAATTGTAGGGGTAGTTTTATCGAATAATTTTTTCAAACAAGTGGGATGCTATTAATGCAAGCAGGTCGAGACCTTTATGTCACCCAATTGCCTTCACCTCGACATGCTTCGGGCTTGGGGTCAAACACGTGTCGGTTGGCTATTGGGCTATAGAAAAGTCGTATGATTTGACTCATAACTATAGTTTTTGAATGATATCTATATATTGTGGTGAATACGTTCAACAATCTTTTGTTAATACAAAAGTTAAGAATACTCGATATTTTTTAATTTTCTTCTAGAAGGTTGACTCAGCTTGGTTTGAACTTGATTGGCATCAACACTAACCCAACTAAGAAAATTATGGAGGCCACATTAATTCATGAAAATGACACCTATTCAACGTTACCAGGACATCAATTATTAAATTCAACAATTTCAACTCCATTATTTGACTATACACACTTGTTGACCTTTTTTCTTTTTCTTTTTTTTGTAAAAATCAAGTCAACAAGTCGACTCTATACTGTGGTGACGGTTTACCCACCGATTACGAGAACTGCATCACCACAACTAGATAAGTGATCCAACGACGACGTCCTCATTAAAAAAAGAGATGATTTTTGTCACTTCAAATATTTCAATACCCAAACAAATAATCCTAAGTAGTTTAATTGGCTAAGTCAAGATTCGACAACTACATCATGAATAACATCTACACTTCCAACTTATGACTACTTGACCAATAGTGTCTCATCCTCTAGCCTCGACCTTAGCTCGACAAGGGCGAAGGTTGACAAAATCAAGTCAATGGGCTAGTTCTATGTCGCACGGATATCTCACCACCAGAAAAGAGATCCAACATCGATTCGGTTACAAGAAAGACTCCAACATATGGTACGATTGCGGCCTCTTGAAATACTTCAATGCCAAATTCTTTGGGAAGAACCAAAATGGAGGGTTTAGATTCTACTTGAGGAACGTCCAAGAGGTGGATGATCCAACGTCGTTTATAGACCAAGTAAAGAACTTACTTGATGATGCCATTGCTGAGCTTCCATATTGGTGTGCAAATGGAGCTGAAGTTGGAGGAAGAGTGGTCGGTGGGAGTTGTAACTTTTTTTTGTCGAAGTTTGATCAACTTTGA

mRNA sequence

ATGCCACCGCCTCCAAGTCAGGTCAAATTCGAGAAGGTCACGAAGGACGATTCGTCACTAGAGACCGTGTCTCATCCTCTAGCCTCGACCTTAGCTCGACAAGGGCGAAGGTTGACAAAATCAAGTCAATGGGCTAGTTCTATGTCGCACGGATATCTCACCACCAGAAAAGAGATCCAACATCGATTCGGTTACAAGAAAGACTCCAACATATGGTACGATTGCGGCCTCTTGAAATACTTCAATGCCAAATTCTTTGGGAAGAACCAAAATGGAGGGTTTAGATTCTACTTGAGGAACGTCCAAGAGGTGGATGATCCAACGTCGTTTATAGACCAAGTAAAGAACTTACTTGATGATGCCATTGCTGAGCTTCCATATTGGTGTGCAAATGGAGCTGAAGTTGGAGGAAGAGTGGTCGGTGGGAGTTGTAACTTTTTTTTGTCGAAGTTTGATCAACTTTGA

Coding sequence (CDS)

ATGCCACCGCCTCCAAGTCAGGTCAAATTCGAGAAGGTCACGAAGGACGATTCGTCACTAGAGACCGTGTCTCATCCTCTAGCCTCGACCTTAGCTCGACAAGGGCGAAGGTTGACAAAATCAAGTCAATGGGCTAGTTCTATGTCGCACGGATATCTCACCACCAGAAAAGAGATCCAACATCGATTCGGTTACAAGAAAGACTCCAACATATGGTACGATTGCGGCCTCTTGAAATACTTCAATGCCAAATTCTTTGGGAAGAACCAAAATGGAGGGTTTAGATTCTACTTGAGGAACGTCCAAGAGGTGGATGATCCAACGTCGTTTATAGACCAAGTAAAGAACTTACTTGATGATGCCATTGCTGAGCTTCCATATTGGTGTGCAAATGGAGCTGAAGTTGGAGGAAGAGTGGTCGGTGGGAGTTGTAACTTTTTTTTGTCGAAGTTTGATCAACTTTGA

Protein sequence

MPPPPSQVKFEKVTKDDSSLETVSHPLASTLARQGRRLTKSSQWASSMSHGYLTTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQVKNLLDDAIAELPYWCANGAEVGGRVVGGSCNFFLSKFDQL

Homology

[Close]

BLAST of Carg19085 vs. NCBI nr
Match: KAG7022882.1 (Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.8 bits (826), Expect = 1.6e-84
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MPPPPSQVKFEKVTKDDSSLETVSHPLASTLARQGRRLTKSSQWASSMSHGYLTTRKEIQ 60
           MPPPPSQVKFEKVTKDDSSLETVSHPLASTLARQGRRLTKSSQWASSMSHGYLTTRKEIQ
Sbjct: 1   MPPPPSQVKFEKVTKDDSSLETVSHPLASTLARQGRRLTKSSQWASSMSHGYLTTRKEIQ 60

Query: 61  HRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQVKNLLDD 120
           HRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQVKNLLDD
Sbjct: 61  HRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQVKNLLDD 120

Query: 121 AIAELPYWCANGAEVGGRVVGGSCNFFLSKFDQL 155
           AIAELPYWCANGAEVGGRVVGGSCNFFLSKFDQL
Sbjct: 121 AIAELPYWCANGAEVGGRVVGGSCNFFLSKFDQL 154

[Close]

BLAST of Carg19085 vs. NCBI nr
Match: KAG6589182.1 (Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232.3 bits (591), Expect = 2.9e-57
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 48  MSHGYLTTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDP 107
           MSHGYLTTR+EIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDP
Sbjct: 1   MSHGYLTTRQEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDP 60

Query: 108 TSFIDQVKNLLDDAIAELPYWCANGAEVGGRVVGGSCNFFLSKFDQL 155
           TSFIDQVKNLLDDAIAELPYWCANGAEVGGRVVGGSCNFFLSKFDQL
Sbjct: 61  TSFIDQVKNLLDDAIAELPYWCANGAEVGGRVVGGSCNFFLSKFDQL 107

[Close]

BLAST of Carg19085 vs. NCBI nr
Match: XP_008455404.1 (PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis melo] >KAA0040265.1 cysteine-rich repeat secretory protein 38-like [Cucumis melo var. makuwa] >TYK07083.1 cysteine-rich repeat secretory protein 38-like [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 73/140 (52.14%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 53  LTTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFID 112
           +T  ++IQ R  YKK + IWYD  LLKY NAKFFGKNQNGGFRFYL NV+E DDPTSF +
Sbjct: 100 ITAAQDIQQRCPYKKGAAIWYDSCLLKYSNAKFFGKNQNGGFRFYLVNVREADDPTSFKE 159

Query: 113 QVKNL----------------------------------------------LDDAIAELP 147
           QVKNL                                              LDDAIAELP
Sbjct: 160 QVKNLLNGLSEMAKTSRNLYAIGDLEIGSSKKLYGLVQCTRDLWTADCKKCLDDAIAELP 219

[Close]

BLAST of Carg19085 vs. NCBI nr
Match: KAG7011922.1 (Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 73/139 (52.52%), Postives = 80/139 (57.55%), Query Frame = 0


Query: 54  TTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQ 113
           T  ++IQ R  YKK + IWYD  LLKY NAKFFGKNQNGGFRFYLRNV++ DDPTSF +Q
Sbjct: 101 TAGQDIQQRCPYKKGAAIWYDSCLLKYSNAKFFGKNQNGGFRFYLRNVRDADDPTSFGEQ 160

Query: 114 VKNL----------------------------------------------LDDAIAELPY 147
           VKNL                                              LDDAIAELPY
Sbjct: 161 VKNLLSGLSEKVKTSRNLYAIGELEIGGSKKVYGLVQCTRDLWTADCKKCLDDAIAELPY 220

[Close]

BLAST of Carg19085 vs. NCBI nr
Match: KAG6572311.1 (Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 73/139 (52.52%), Postives = 80/139 (57.55%), Query Frame = 0


Query: 54  TTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQ 113
           T  ++IQ R  YKK + IWYD  LLKY NAKFFGKNQNGGFRFYLRNV++ DDPTSF +Q
Sbjct: 101 TAGQDIQQRCPYKKGAAIWYDSCLLKYSNAKFFGKNQNGGFRFYLRNVRDADDPTSFGEQ 160

Query: 114 VKNL----------------------------------------------LDDAIAELPY 147
           VKNL                                              LDDAIAELPY
Sbjct: 161 VKNLLSGLSEKVKTSRNLYAIGELEIGGSKKVYGLVQCTRDLWTADCKKCLDDAIAELPY 220

[Close]

BLAST of Carg19085 vs. ExPASy Swiss-Prot
Match: Q9LRJ9 (Cysteine-rich repeat secretory protein 38 OS=Arabidopsis thaliana OX=3702 GN=CRRSP38 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.8e-08
Identity = 46/140 (32.86%), Postives = 56/140 (40.00%), Query Frame = 0


Query: 54  TTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQ 113
           T   E++ R    K   +WYD  L+KY +  FFGK      RFYL NV+ V DP++F  Q
Sbjct: 105 TAIPELRQRCPNNKAGIVWYDNCLVKYSSTNFFGKIDFEN-RFYLYNVKNVSDPSTFNSQ 164

Query: 114 VKNLLDD-----------------------------------------------AIAELP 147
            K LL +                                                I ELP
Sbjct: 165 TKALLTELTKKATTRDNQKLFATGEKNIGKNKLYGLVQCTRDLKSITCKACLNGIIGELP 224

[Close]

BLAST of Carg19085 vs. ExPASy TrEMBL
Match: A0A5D3C568 (Cysteine-rich repeat secretory protein 38-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004010 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 73/140 (52.14%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 53  LTTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFID 112
           +T  ++IQ R  YKK + IWYD  LLKY NAKFFGKNQNGGFRFYL NV+E DDPTSF +
Sbjct: 100 ITAAQDIQQRCPYKKGAAIWYDSCLLKYSNAKFFGKNQNGGFRFYLVNVREADDPTSFKE 159

Query: 113 QVKNL----------------------------------------------LDDAIAELP 147
           QVKNL                                              LDDAIAELP
Sbjct: 160 QVKNLLNGLSEMAKTSRNLYAIGDLEIGSSKKLYGLVQCTRDLWTADCKKCLDDAIAELP 219

[Close]

BLAST of Carg19085 vs. ExPASy TrEMBL
Match: A0A1S3C1J7 (cysteine-rich repeat secretory protein 38-like OS=Cucumis melo OX=3656 GN=LOC103495573 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 73/140 (52.14%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 53  LTTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFID 112
           +T  ++IQ R  YKK + IWYD  LLKY NAKFFGKNQNGGFRFYL NV+E DDPTSF +
Sbjct: 100 ITAAQDIQQRCPYKKGAAIWYDSCLLKYSNAKFFGKNQNGGFRFYLVNVREADDPTSFKE 159

Query: 113 QVKNL----------------------------------------------LDDAIAELP 147
           QVKNL                                              LDDAIAELP
Sbjct: 160 QVKNLLNGLSEMAKTSRNLYAIGDLEIGSSKKLYGLVQCTRDLWTADCKKCLDDAIAELP 219

[Close]

BLAST of Carg19085 vs. ExPASy TrEMBL
Match: A0A6J1I0D9 (cysteine-rich repeat secretory protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111468294 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.4e-27
Identity = 72/139 (51.80%), Postives = 80/139 (57.55%), Query Frame = 0


Query: 54  TTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQ 113
           T  ++IQ R  YKK + IWYD  LLKY NAKFFGKNQNGGFRFYLRNV++ +DPTSF +Q
Sbjct: 101 TAGQDIQQRCPYKKGAAIWYDSCLLKYSNAKFFGKNQNGGFRFYLRNVRDAEDPTSFGEQ 160

Query: 114 VKNL----------------------------------------------LDDAIAELPY 147
           VKNL                                              LDDAIAELPY
Sbjct: 161 VKNLLSGLSEKVKTSRNLYAIGELEIGSSKKVYGLVQCTRDLWSADCKKCLDDAIAELPY 220

[Close]

BLAST of Carg19085 vs. ExPASy TrEMBL
Match: A0A6J1GJK5 (cysteine-rich repeat secretory protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111454897 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.4e-27
Identity = 72/139 (51.80%), Postives = 80/139 (57.55%), Query Frame = 0


Query: 54  TTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQ 113
           T  ++IQ R  YKK + IWYD  LLKY NAKFFGKNQNGGFRFYLRNV++ +DPTSF +Q
Sbjct: 101 TAGQDIQQRCPYKKGAAIWYDSCLLKYSNAKFFGKNQNGGFRFYLRNVRDAEDPTSFGEQ 160

Query: 114 VKNL----------------------------------------------LDDAIAELPY 147
           VKNL                                              LDDAIAELPY
Sbjct: 161 VKNLLSGLSEKVKTSRNLFAIGELEIGSSKKVYGLVQCTRDLWTADCKKCLDDAIAELPY 220

[Close]

BLAST of Carg19085 vs. ExPASy TrEMBL
Match: A0A0A0K6W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044860 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.5e-27
Identity = 72/136 (52.94%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 57  KEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQVKN 116
           ++IQ R  YKK + IWYD  LLKY NAKFFGKNQNGGFRFYL NV+E DDPTSF +QVKN
Sbjct: 105 QDIQQRCPYKKGAAIWYDSCLLKYSNAKFFGKNQNGGFRFYLVNVREADDPTSFKEQVKN 164

Query: 117 L----------------------------------------------LDDAIAELPYWCA 147
           L                                              LDDAIAELPY CA
Sbjct: 165 LLNGLSETAKTSRNLYAIGDLEIGSSRKLYGLVQCTRDLWTADCKKCLDDAIAELPYCCA 224

[Close]

BLAST of Carg19085 vs. TAIR 10
Match: AT3G22060.1 (Receptor-like protein kinase-related family protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-09
Identity = 46/140 (32.86%), Postives = 56/140 (40.00%), Query Frame = 0


Query: 54  TTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQ 113
           T   E++ R    K   +WYD  L+KY +  FFGK      RFYL NV+ V DP++F  Q
Sbjct: 105 TAIPELRQRCPNNKAGIVWYDNCLVKYSSTNFFGKIDFEN-RFYLYNVKNVSDPSTFNSQ 164

Query: 114 VKNLLDD-----------------------------------------------AIAELP 147
            K LL +                                                I ELP
Sbjct: 165 TKALLTELTKKATTRDNQKLFATGEKNIGKNKLYGLVQCTRDLKSITCKACLNGIIGELP 224

[Close]

BLAST of Carg19085 vs. TAIR 10
Match: AT3G58310.1 (Domain of unknown function (DUF26) )

HSP 1 Score: 41.6 bits (96), Expect = 6.8e-04
Identity = 38/141 (26.95%), Postives = 51/141 (36.17%), Query Frame = 0


Query: 54  TTRKEIQHRFGYKKDSNIWYDCGLLKYFNAKFFGKNQNGGFRFYLRNVQEVDDPTSFIDQ 113
           T   E++ R    K   +W+D  LLK     FF K  +   +FY+ + ++V DP  F  +
Sbjct: 109 TATSELRRRCPMNKAGIVWFDKCLLKISPTAFFEKIDDKN-KFYMYSTKKVSDPALFNVK 168

Query: 114 VKNL------------------------------------------------LDDAIAEL 147
            K L                                                LD  I EL
Sbjct: 169 TKALLTELTAKATRRSDKLLLYETGEMKLGKMKLYGMVQCRRDLWFTVCKTCLDKIIGEL 228

The following BLAST results are available for this feature:

BLAST of Carg19085 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022882.1	1.6e-84	100.00	Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp...	[more]
KAG6589182.1	2.9e-57	99.07	Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp...	[more]
XP_008455404.1	2.4e-27	52.14	PREDICTED: cysteine-rich repeat secretory protein 38-like [Cucumis melo] >KAA004...	[more]
KAG7011922.1	2.4e-27	52.52	Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp...	[more]
KAG6572311.1	2.4e-27	52.52	Cysteine-rich repeat secretory protein 38, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Carg19085 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRJ9	9.8e-08	32.86	Cysteine-rich repeat secretory protein 38 OS=Arabidopsis thaliana OX=3702 GN=CRR...	[more]

BLAST of Carg19085 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C568	1.2e-27	52.14	Cysteine-rich repeat secretory protein 38-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3C1J7	1.2e-27	52.14	cysteine-rich repeat secretory protein 38-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1I0D9	3.4e-27	51.80	cysteine-rich repeat secretory protein 38-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GJK5	3.4e-27	51.80	cysteine-rich repeat secretory protein 38-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0K6W4	7.5e-27	52.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044860 PE=4 SV=1	[more]

BLAST of Carg19085 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22060.1	7.0e-09	32.86	Receptor-like protein kinase-related family protein	[more]
AT3G58310.1	6.8e-04	26.95	Domain of unknown function (DUF26)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32411:SF43	CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38	coord: 53..119
None	No IPR available	PANTHER	PTHR32411	CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38-RELATED	coord: 53..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19085-RA	Carg19085-RA	mRNA