Carg19083 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19083
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	B box-type domain-containing protein
Location	Carg_Chr11: 12291085 .. 12291486 (-)
RNA-Seq Expression	Carg19083
Synteny	Carg19083

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAAAGGAGTAGAGCAAGAAGAACCACCCCAACCCGCCGTCGAGCAGCGGCGGAGAACCGACAAGACGACGGCGGCGGGCGGGGGAGGCGAGCCAGTGGCGTGCGAGCTCTGCGGTTCGAGGGCGTCGATGTACTGCCAAGCCGACGAAGCGTACTTGTGCGGAAAGTGCGACAAGTCGGTTCATGGCGCTAATTTCTTAGCGCAGCGGCACGTGCGGTGCCTTCTGTGCAGCACGTGCCAGAGCCATACGCAGAGATATCTGTTGGGAGCTTCCATGGAAATGGAGATCCTGCTTCCTAGTATTGTGAGAAGTTTGGTGGAGAGGAATTACCGAAATTATCCCTGTCATCCACGTGATTTTGAGGACAATTTGGTAACTCGTTGCCTGTTTCTTTGA

mRNA sequence

ATGTGCAAAGGAGTAGAGCAAGAAGAACCACCCCAACCCGCCGTCGAGCAGCGGCGGAGAACCGACAAGACGACGGCGGCGGGCGGGGGAGGCGAGCCAGTGGCGTGCGAGCTCTGCGGTTCGAGGGCGTCGATGTACTGCCAAGCCGACGAAGCGTACTTGTGCGGAAAGTGCGACAAGTCGGTTCATGGCGCTAATTTCTTAGCGCAGCGGCACGTGCGGTGCCTTCTGTGCAGCACGTGCCAGAGCCATACGCAGAGATATCTGTTGGGAGCTTCCATGGAAATGGAGATCCTGCTTCCTAGTATTGTGAGAAGTTTGGTGGAGAGGAATTACCGAAATTATCCCTGTCATCCACGTGATTTTGAGGACAATTTGGTAACTCGTTGCCTGTTTCTTTGA

Coding sequence (CDS)

ATGTGCAAAGGAGTAGAGCAAGAAGAACCACCCCAACCCGCCGTCGAGCAGCGGCGGAGAACCGACAAGACGACGGCGGCGGGCGGGGGAGGCGAGCCAGTGGCGTGCGAGCTCTGCGGTTCGAGGGCGTCGATGTACTGCCAAGCCGACGAAGCGTACTTGTGCGGAAAGTGCGACAAGTCGGTTCATGGCGCTAATTTCTTAGCGCAGCGGCACGTGCGGTGCCTTCTGTGCAGCACGTGCCAGAGCCATACGCAGAGATATCTGTTGGGAGCTTCCATGGAAATGGAGATCCTGCTTCCTAGTATTGTGAGAAGTTTGGTGGAGAGGAATTACCGAAATTATCCCTGTCATCCACGTGATTTTGAGGACAATTTGGTAACTCGTTGCCTGTTTCTTTGA

Protein sequence

MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDKSVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPRDFEDNLVTRCLFL

Homology

[Close]

BLAST of Carg19083 vs. NCBI nr
Match: KAG6589180.1 (B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022880.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.3 bits (721), Expect = 2.1e-72
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK
Sbjct: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60

Query: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120
           SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR
Sbjct: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120

Query: 121 DFEDNLVTRCLFL 134
           DFEDNLVTRCLFL
Sbjct: 121 DFEDNLVTRCLFL 133

[Close]

BLAST of Carg19083 vs. NCBI nr
Match: XP_023530332.1 (B-box domain protein 30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.3 bits (695), Expect = 2.2e-69
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQE PPQPAVE+RRR DKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK
Sbjct: 1   MCKGVEQEAPPQPAVERRRRIDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60

Query: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120
           SVH ANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVR LVERNYRNYPCHPR
Sbjct: 61  SVHSANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRGLVERNYRNYPCHPR 120

Query: 121 DFEDNLVTRCLFL 134
           DFEDNLVTRCLFL
Sbjct: 121 DFEDNLVTRCLFL 133

[Close]

BLAST of Carg19083 vs. NCBI nr
Match: XP_022989503.1 (B-box domain protein 30-like [Cucurbita maxima])

HSP 1 Score: 254.2 bits (648), Expect = 6.1e-64
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQEEPPQ AVEQRRRTDK TA GGGGEPVACELCGSRASMYCQADEAYLCGKCDK
Sbjct: 1   MCKGVEQEEPPQLAVEQRRRTDKKTAVGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60

Query: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120
           SVHGANFLAQRHVRCLLCS CQSH+QRYLLG SMEMEILLPSIVRSLVERNYRNYPCHPR
Sbjct: 61  SVHGANFLAQRHVRCLLCSPCQSHSQRYLLGTSMEMEILLPSIVRSLVERNYRNYPCHPR 120

Query: 121 DFEDNL 127
           DFEDNL
Sbjct: 121 DFEDNL 126

[Close]

BLAST of Carg19083 vs. NCBI nr
Match: KGN43541.1 (hypothetical protein Csa_020490 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-42
Identity = 96/137 (70.07%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQEE  Q AV QRR TD    A GGG+PV CELCGSRAS+YC+ADEAYLCGKCDK
Sbjct: 1   MCKGVEQEETTQVAVRQRRTTD--DGAAGGGDPVRCELCGSRASLYCEADEAYLCGKCDK 60

Query: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120
           SVH ANFLA RHVRCLLC+TCQSHTQRYLLGASME+ +L PS+V    ERN+ NY C   
Sbjct: 61  SVHSANFLALRHVRCLLCNTCQSHTQRYLLGASMEV-VLPPSLVSR--ERNFLNYHCDSD 120

Query: 121 DFEDN----LVTRCLFL 134
            F  N    L T CLFL
Sbjct: 121 SFVQNCSQVLKTPCLFL 132

[Close]

BLAST of Carg19083 vs. NCBI nr
Match: KAG6572307.1 (B-box domain protein 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011919.1 B-box domain protein 30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.5 bits (441), Expect = 6.2e-40
Identity = 91/138 (65.94%), Postives = 105/138 (76.09%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGV QEE  Q  V++RR T+   A GGGG+P  CELCGSRAS+YCQADEAYLC KCDK
Sbjct: 1   MCKGVGQEE-TQATVQRRRTTEMARAKGGGGDPEPCELCGSRASLYCQADEAYLCQKCDK 60

Query: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIV-RSLVERNYRNYPCHP 120
            VH ANFLA RHVRCLLC+TCQ  T+RYLLGAS  ME++LPSIV  SL+ERN++NY C  
Sbjct: 61  MVHSANFLALRHVRCLLCNTCQRATRRYLLGAS--MEVVLPSIVSSSLMERNFQNYHCGS 120

Query: 121 RDFEDN----LVTRCLFL 134
            D++ N    L T CLFL
Sbjct: 121 DDYDQNSSQLLQTPCLFL 135

[Close]

BLAST of Carg19083 vs. ExPASy Swiss-Prot
Match: Q9LRM4 (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.9e-18
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGG--------GEPVACELCGSRASMYCQADEA 60
           MC+G+  EE         RR+D     GGG          PV CELC   AS++C+AD A
Sbjct: 1   MCRGLNNEE--------SRRSD-----GGGCRSLCTRPSVPVRCELCDGDASVFCEADSA 60

Query: 61  YLCGKCDKSVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSI 104
           +LC KCD+ VHGANFLA RHVR +LC++CQ  T+R L+G   +  ++LPS+
Sbjct: 61  FLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLTRRCLVG-DHDFHVVLPSV 97

[Close]

BLAST of Carg19083 vs. ExPASy Swiss-Prot
Match: Q1G3I2 (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.0e-18
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTD----KTTAAGGGGEPVACELCGSRASMYCQADEAYLCG 60
           MC+G E+EE         RR+D    +         PV+CELCG  A++YC+AD A+LC 
Sbjct: 1   MCRGFEKEE--------ERRSDNGGCQRLCTESHKAPVSCELCGENATVYCEADAAFLCR 60

Query: 61  KCDKSVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSI 104
           KCD+ VH ANFLA+RH+R ++C+TC+  T+R L+G +    ++LP I
Sbjct: 61  KCDRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDN--FNVVLPEI 97

[Close]

BLAST of Carg19083 vs. ExPASy Swiss-Prot
Match: Q9LJB7 (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.3e-11
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 36 CELCGSRASMYCQADEAYLCGKCDKSVHGANFLAQRHVRCLLCSTCQSHTQRYLLG 92
          CELCG+ A ++C AD A+LC  CD   H +NFL  RH R ++C  C+S TQ ++ G
Sbjct: 5  CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSG 60

[Close]

BLAST of Carg19083 vs. ExPASy Swiss-Prot
Match: Q96502 (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 35 ACELCGSRA-SMYCQADEAYLCGKCDKSVHGANFLAQRHVRCLLCSTCQSHTQRYLLGA 93
          AC+ C S A ++YC+AD AYLC  CD  VH AN +A RH R  +C +C+S    +L  A
Sbjct: 15 ACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKA 73

[Close]

BLAST of Carg19083 vs. ExPASy Swiss-Prot
Match: O22800 (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 34 VACELCGSR-ASMYCQADEAYLCGKCDKSVHGANFLAQRHVRCLLCSTC 82
          VACE CG R A ++C+AD A LC  CD+ VH AN L+++HVR  +C  C
Sbjct: 10 VACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNC 58

[Close]

BLAST of Carg19083 vs. ExPASy TrEMBL
Match: A0A6J1JQG3 (B-box domain protein 30-like OS=Cucurbita maxima OX=3661 GN=LOC111486560 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.0e-64
Identity = 120/126 (95.24%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQEEPPQ AVEQRRRTDK TA GGGGEPVACELCGSRASMYCQADEAYLCGKCDK
Sbjct: 1   MCKGVEQEEPPQLAVEQRRRTDKKTAVGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60

Query: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120
           SVHGANFLAQRHVRCLLCS CQSH+QRYLLG SMEMEILLPSIVRSLVERNYRNYPCHPR
Sbjct: 61  SVHGANFLAQRHVRCLLCSPCQSHSQRYLLGTSMEMEILLPSIVRSLVERNYRNYPCHPR 120

Query: 121 DFEDNL 127
           DFEDNL
Sbjct: 121 DFEDNL 126

[Close]

BLAST of Carg19083 vs. ExPASy TrEMBL
Match: A0A0A0K6V9 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044810 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 96/137 (70.07%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQEE  Q AV QRR TD    A GGG+PV CELCGSRAS+YC+ADEAYLCGKCDK
Sbjct: 1   MCKGVEQEETTQVAVRQRRTTD--DGAAGGGDPVRCELCGSRASLYCEADEAYLCGKCDK 60

Query: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120
           SVH ANFLA RHVRCLLC+TCQSHTQRYLLGASME+ +L PS+V    ERN+ NY C   
Sbjct: 61  SVHSANFLALRHVRCLLCNTCQSHTQRYLLGASMEV-VLPPSLVSR--ERNFLNYHCDSD 120

Query: 121 DFEDN----LVTRCLFL 134
            F  N    L T CLFL
Sbjct: 121 SFVQNCSQVLKTPCLFL 132

[Close]

BLAST of Carg19083 vs. ExPASy TrEMBL
Match: A0A5A7TAC0 (B-box zinc finger protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004060 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.5e-39
Identity = 93/137 (67.88%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQEE   P V QR  TD   A   GG+PV CELCGSRAS+YC+ADEAYLCGKCDK
Sbjct: 1   MCKGVEQEETKAP-VRQRLTTDDRAAR--GGDPVRCELCGSRASLYCEADEAYLCGKCDK 60

Query: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120
           SVH ANFLA RHVRCLLC+TCQSHTQRYLLGAS  ME+++PSIV    ERN+ NY C   
Sbjct: 61  SVHNANFLALRHVRCLLCNTCQSHTQRYLLGAS--MEVVVPSIVSR--ERNFLNYHCDSD 120

Query: 121 DFEDN----LVTRCLFL 134
            F  N    L T CLFL
Sbjct: 121 GFVQNCSQVLKTPCLFL 130

[Close]

BLAST of Carg19083 vs. ExPASy TrEMBL
Match: A0A1S3C0U6 (B-box zinc finger protein 21 OS=Cucumis melo OX=3656 GN=LOC103495577 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.5e-39
Identity = 93/137 (67.88%), Postives = 101/137 (73.72%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGGGEPVACELCGSRASMYCQADEAYLCGKCDK 60
           MCKGVEQEE   P V QR  TD   A   GG+PV CELCGSRAS+YC+ADEAYLCGKCDK
Sbjct: 1   MCKGVEQEETKAP-VRQRLTTDDRAAR--GGDPVRCELCGSRASLYCEADEAYLCGKCDK 60

Query: 61  SVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSIVRSLVERNYRNYPCHPR 120
           SVH ANFLA RHVRCLLC+TCQSHTQRYLLGAS  ME+++PSIV    ERN+ NY C   
Sbjct: 61  SVHNANFLALRHVRCLLCNTCQSHTQRYLLGAS--MEVVVPSIVSR--ERNFLNYHCDSD 120

Query: 121 DFEDN----LVTRCLFL 134
            F  N    L T CLFL
Sbjct: 121 GFVQNCSQVLKTPCLFL 130

[Close]

BLAST of Carg19083 vs. ExPASy TrEMBL
Match: A0A6J1GNE7 (B-box domain protein 30 OS=Cucurbita moschata OX=3662 GN=LOC111455519 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.3e-34
Identity = 77/113 (68.14%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 26  AAGGGGEPVACELCGSRASMYCQADEAYLCGKCDKSVHGANFLAQRHVRCLLCSTCQSHT 85
           A GGGG+P  CELCGSRAS+YCQADEAYLC KCDK VH ANFLA RHVRCLLC+TCQ  T
Sbjct: 4   AKGGGGDPEPCELCGSRASLYCQADEAYLCQKCDKMVHSANFLALRHVRCLLCNTCQRAT 63

Query: 86  QRYLLGASMEMEILLPSIV-RSLVERNYRNYPCHPRDFEDN----LVTRCLFL 134
           +RYLLGAS  ME++LPSIV  S +ERN++NY C   D++ N    L T CLFL
Sbjct: 64  RRYLLGAS--MEVVLPSIVSSSSMERNFQNYHCGSDDYDQNSSQLLQTPCLFL 114

[Close]

BLAST of Carg19083 vs. TAIR 10
Match: AT3G21890.1 (B-box type zinc finger family protein )

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-19
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTDKTTAAGGG--------GEPVACELCGSRASMYCQADEA 60
           MC+G+  EE         RR+D     GGG          PV CELC   AS++C+AD A
Sbjct: 1   MCRGLNNEE--------SRRSD-----GGGCRSLCTRPSVPVRCELCDGDASVFCEADSA 60

Query: 61  YLCGKCDKSVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSI 104
           +LC KCD+ VHGANFLA RHVR +LC++CQ  T+R L+G   +  ++LPS+
Sbjct: 61  FLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLTRRCLVG-DHDFHVVLPSV 97

[Close]

BLAST of Carg19083 vs. TAIR 10
Match: AT4G15248.1 (B-box type zinc finger family protein )

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-19
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 1   MCKGVEQEEPPQPAVEQRRRTD----KTTAAGGGGEPVACELCGSRASMYCQADEAYLCG 60
           MC+G E+EE         RR+D    +         PV+CELCG  A++YC+AD A+LC 
Sbjct: 1   MCRGFEKEE--------ERRSDNGGCQRLCTESHKAPVSCELCGENATVYCEADAAFLCR 60

Query: 61  KCDKSVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASMEMEILLPSI 104
           KCD+ VH ANFLA+RH+R ++C+TC+  T+R L+G +    ++LP I
Sbjct: 61  KCDRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDN--FNVVLPEI 97

[Close]

BLAST of Carg19083 vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-15
Identity = 39/79 (49.37%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 36  CELCGSRASMYCQADEAYLCGKCDKSVHGANFLAQRHVRCLLCSTCQSHTQRYLLGASME 95
           CELC   A MYC++D+A LC  CD  VHGANFL  +H+RCLLCS CQSHT     G ++ 
Sbjct: 6   CELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWKASGLNLG 65

Query: 96  MEILLPSIVRSLVERNYRN 115
             +   SI  S + R   N
Sbjct: 66  PTV---SICESCLARKKNN 81

[Close]

BLAST of Carg19083 vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein )

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-14
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 36 CELCGSRASMYCQADEAYLCGKCDKSVHGANFLAQRHVRCLLCSTCQSHT 86
          C+LC   A MYC++D+A LC  CD  VHGANFL  +H RCLLCS CQS T
Sbjct: 5  CDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLT 54

[Close]

BLAST of Carg19083 vs. TAIR 10
Match: AT3G21150.1 (B-box 32 )

HSP 1 Score: 68.6 bits (166), Expect = 4.5e-12
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 36 CELCGSRASMYCQADEAYLCGKCDKSVHGANFLAQRHVRCLLCSTCQSHTQRYLLG 92
          CELCG+ A ++C AD A+LC  CD   H +NFL  RH R ++C  C+S TQ ++ G
Sbjct: 5  CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSG 60

The following BLAST results are available for this feature:

BLAST of Carg19083 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589180.1	2.1e-72	100.00	B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG702...	[more]
XP_023530332.1	2.2e-69	96.24	B-box domain protein 30-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989503.1	6.1e-64	95.24	B-box domain protein 30-like [Cucurbita maxima]	[more]
KGN43541.1	2.3e-42	70.07	hypothetical protein Csa_020490 [Cucumis sativus]	[more]
KAG6572307.1	6.2e-40	65.94	B-box domain protein 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]

BLAST of Carg19083 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRM4	6.9e-18	45.95	B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1	[more]
Q1G3I2	9.0e-18	43.93	B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1	[more]
Q9LJB7	6.3e-11	48.21	B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1	[more]
Q96502	2.2e-08	47.46	Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=COL2 PE=1...	[more]
O22800	2.9e-08	53.06	Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE...	[more]

BLAST of Carg19083 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JQG3	3.0e-64	95.24	B-box domain protein 30-like OS=Cucurbita maxima OX=3661 GN=LOC111486560 PE=4 SV...	[more]
A0A0A0K6V9	1.1e-42	70.07	B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044810 ...	[more]
A0A5A7TAC0	1.5e-39	67.88	B-box zinc finger protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C0U6	1.5e-39	67.88	B-box zinc finger protein 21 OS=Cucumis melo OX=3656 GN=LOC103495577 PE=4 SV=1	[more]
A0A6J1GNE7	9.3e-34	68.14	B-box domain protein 30 OS=Cucurbita moschata OX=3662 GN=LOC111455519 PE=4 SV=1	[more]

BLAST of Carg19083 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21890.1	4.9e-19	45.95	B-box type zinc finger family protein	[more]
AT4G15248.1	6.4e-19	43.93	B-box type zinc finger family protein	[more]
AT5G54470.1	1.1e-15	49.37	B-box type zinc finger family protein	[more]
AT4G27310.1	6.2e-14	62.00	B-box type zinc finger family protein	[more]
AT3G21150.1	4.5e-12	48.21	B-box 32	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 31..77 e-value: 1.4E-10 score: 51.2
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 35..72 e-value: 4.3E-6 score: 26.8
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 31..77 score: 8.730886
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR31717:SF100	B-BOX ZINC FINGER PROTEIN 29	coord: 33..113
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 33..113
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 35..77 e-value: 1.15022E-14 score: 61.5447

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19083-RA	Carg19083-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding