Carg19079 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19079
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein translation factor SUI1 homolog
Location	Carg_Chr11: 12255877 .. 12258140 (-)
RNA-Seq Expression	Carg19079
Synteny	Carg19079

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGGGGGGGGGTGGTTATTGGTATGATTTTTGATACCGAATTTGAAATAAGAAAAGACGTATGATTTAGATTCCGAGGACAGGACAGGGTTGGCTATTTGGTTCGTGGAGTGAAAAAGCCGATAGATACTATCTTCCTTGTTTGTTTGATCCCATATGGAATATTAAACGAAATTTAGCGTTATTAAAAGAACCTTTAATTAATGTGTTCATGGTTCGTACTTTACCGTTTGATCTACTAAATTTTGTTCATTGTTATTTTCTCGAGGGTTTGAATTTTGGAGTGTATGCTCTTTTGATATTGAATCGAAAAGTGTGTGAGGGGATCGAAAGGATCGTAGATTAAACGTTGGACTTGTAGCTTTATGAGGTTGAGGGGTGGATTATTATGTTTTGTTTTTGACCAAATTGATGCTTCTGTATCTTGTGGTTTCAACTCGGGATCTGTTATGTCTTGCAGATTTGAGCACAGCTTAATTCAGATAATATTTCTTATTTGCTTGTTGGTTACCTGTGTTCTACTTCGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGGTAACTTCCTCAAAAACTAATCTAGTTTTTTACTATTTCGTAAGGTTGTGTTGCATTAGAAGTCTATAGATTTGTTTTCATTTCAAAACTAAATAATTTTATTTGGTGGTTAGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGTCAAAAGAGTATGTTCATGTGCGCATTCAGCAACGCAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTCAGTTCTACCACCCTAAATGACTAGTGTATTAATCCCTCCGTTTTTTCGTTGATGCCCATATCATTTGAAGAGACATAATATGTTTTCACTTTATCCAAACGTGGGGTGCTGAGGTGCAACTCCGCAGTTTCTATGTAAAACTTCGGGTCAATTCTGTGCATTTATGTCGATCATGAATAACCTAGACGGGTTTATTGGATAATTTGCAATTTAACCGTATAGATGGAAGGGATGGTTCCATACATATGTTTTGCCCGTTCGCCCCCTTCCTCCTCTCGCTCTTTTCTATGCTTCAATGCCACAATCAATAACGTTGCCAGTAATGGTTGCCTTGCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGTAATGAAGGACTGTATATACCCTGTGACCATGATTATGTTTTTTGGTAAAACAATTTTTGACACGTTCACCCTTTTTTCCGTAACGATAGGCTGGCATTGTGAAGAAGGAGAATATCAAGATTCACGGTTTCTAAAAAGCAGCACGATCGAGTTCTATTTCTGTTTACAGCAGCTTAACTGGTAGTAGTGGACATTATATACCTATCTTCTTTAGAACTTGAAGTGAGTGCCTGTTACATTACAACTCTTGATCCATGTACGTTAGCTTTGCTTGGTTATGCAGACGAAGTTATGGATCATTGGTCCCTTTAAATTAAATGACATGTTGTCTGCTTTCTTGTCACGCGACGTTCGACCTATCGTTTTCTTGAATGTGATTGGCTGGATGTTAACCAGCACTAGATATATTATCTACTGAGCATCGCTTATCCATGAAAAACTGCATCTTTCCTGTGTATGAGAAAAAGGAAGGTTGTAAATGGAGATTCTGCGATAAGTTATTCTTTTGCCTCTAAATGAATTGAATGTAGAGGGAGCATCTACTTTCTTTTGATATCCAAAAGGAATATGGCCTCTACAATTCGGCTTTGGGGCGTTTTGGCTCTCTTCGACTCTTCGCCAGTTGAGGGCGGACTCAGAACTTTCCTAGCCATTTTTCTTTTGAAATTAGGGCATTGGTCTATATTTCGAGAAAAAGTCTTTTGTCTTTCATTCCTGCCTAGATCGAGTTATGGGGAGGAATCCCAACGTATCATTTTTACTCACTAGAGAAGGCTTCGATATTTCGGTTTTAGGTGCTGGATGAATCTCCCGTTCTCGAGGGTCTTAGAATTTAGGAGTTGAATTGGGTAATTCATTGTCCATTCTGTTTGTAAATATGTTTGTCAACCAAAAGAAGAAATGAATGAAGTTAAATGTGTTTCTTTCCAAGATTGCTGTAGCTCTTATTGTTAATATCCCATTAAATAAGA

mRNA sequence

GGGGGGGGGGGGGTGGTTATTGGTATGATTTTTGATACCGAATTTGAAATAAGAAAAGACGTATGATTTAGATTCCGAGGACAGGACAGGGTTGGCTATTTGGTTCGTGGAGTGAAAAAGCCGATAGATACTATCTTCCTTGTTTGTTTGATCCCATATGGAATATTAAACGAAATTTAGCGTTATTAAAAGAACCTTTAATTAATGTGTTCATGGTTCGTACTTTACCGTTTGATCTACTAAATTTTGTTCATTGTTATTTTCTCGAGGGTTTGAATTTTGGAGTGTATGCTCTTTTGATATTGAATCGAAAAGTGTGTGAGGGGATCGAAAGGATCGTAGATTAAACGTTGGACTTGTAGCTTTATGAGATTTGAGCACAGCTTAATTCAGATAATATTTCTTATTTGCTTGTTGGTTACCTGTGTTCTACTTCGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGTCAAAAGAGTATGTTCATGTGCGCATTCAGCAACGCAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAATATCAAGATTCACGGTTTCTAAAAAGCAGCACGATCGAGTTCTATTTCTGTTTACAGCAGCTTAACTGGTAGTAGTGGACATTATATACCTATCTTCTTTAGAACTTGAAGTGAGTGCCTGTTACATTACAACTCTTGATCCATGTACGTTAGCTTTGCTTGGTTATGCAGACGAAGTTATGGATCATTGGTCCCTTTAAATTAAATGACATGTTGTCTGCTTTCTTGTCACGCGACGTTCGACCTATCGTTTTCTTGAATGTGATTGGCTGGATGTTAACCAGCACTAGATATATTATCTACTGAGCATCGCTTATCCATGAAAAACTGCATCTTTCCTGTGTATGAGAAAAAGGAAGGTTGTAAATGGAGATTCTGCGATAAGTTATTCTTTTGCCTCTAAATGAATTGAATGTAGAGGGAGCATCTACTTTCTTTTGATATCCAAAAGGAATATGGCCTCTACAATTCGGCTTTGGGGCGTTTTGGCTCTCTTCGACTCTTCGCCAGTTGAGGGCGGACTCAGAACTTTCCTAGCCATTTTTCTTTTGAAATTAGGGCATTGGTCTATATTTCGAGAAAAAGTCTTTTGTCTTTCATTCCTGCCTAGATCGAGTTATGGGGAGGAATCCCAACGTATCATTTTTACTCACTAGAGAAGGCTTCGATATTTCGGTTTTAGGTGCTGGATGAATCTCCCGTTCTCGAGGGTCTTAGAATTTAGGAGTTGAATTGGGTAATTCATTGTCCATTCTGTTTGTAAATATGTTTGTCAACCAAAAGAAGAAATGAATGAAGTTAAATGTGTTTCTTTCCAAGATTGCTGTAGCTCTTATTGTTAATATCCCATTAAATAAGA

Coding sequence (CDS)

ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGTCAAAAGAGTATGTTCATGTGCGCATTCAGCAACGCAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAATATCAAGATTCACGGTTTCTAA

Protein sequence

MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF

Homology

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BLAST of Carg19079 vs. NCBI nr
Match: XP_022989016.1 (protein translation factor SUI1 homolog [Cucurbita maxima] >XP_022989017.1 protein translation factor SUI1 homolog [Cucurbita maxima] >XP_023530206.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >XP_023530207.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >KAG7022876.1 hypothetical protein SDJN02_16612 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19079 vs. NCBI nr
Match: KAG6572304.1 (hypothetical protein SDJN03_29032, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19079 vs. NCBI nr
Match: XP_004144489.1 (protein translation factor SUI1 homolog [Cucumis sativus] >XP_008455418.1 PREDICTED: protein translation factor SUI1 homolog [Cucumis melo] >XP_008455419.1 PREDICTED: protein translation factor SUI1 homolog [Cucumis melo] >XP_011658706.1 protein translation factor SUI1 homolog [Cucumis sativus] >XP_022135675.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022135676.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022135677.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022135678.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022930780.1 protein translation factor SUI1 homolog [Cucurbita moschata] >XP_022952138.1 protein translation factor SUI1 homolog [Cucurbita moschata] >XP_022969300.1 protein translation factor SUI1 homolog [Cucurbita maxima] >XP_022989018.1 protein translation factor SUI1 homolog [Cucurbita maxima] >XP_023530208.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >XP_023554643.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >XP_038886949.1 protein translation factor SUI1 homolog [Benincasa hispida] >XP_038886950.1 protein translation factor SUI1 homolog [Benincasa hispida] >XP_038886951.1 protein translation factor SUI1 homolog [Benincasa hispida] >XP_038886965.1 protein translation factor SUI1 homolog [Benincasa hispida] >KAG6589173.1 hypothetical protein SDJN03_17738, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022875.1 hypothetical protein SDJN02_16611 [Cucurbita argyrosperma subsp. argyrosperma] >KGN43535.1 hypothetical protein Csa_020483 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19079 vs. NCBI nr
Match: XP_022952139.1 (protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022952140.1 protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022952141.1 protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022952142.1 protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022969301.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_022969302.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_023554644.1 protein translation factor SUI1 homolog 2-like [Cucurbita pepo subsp. pepo] >XP_023554645.1 protein translation factor SUI1 homolog 2-like [Cucurbita pepo subsp. pepo] >KAG6572303.1 hypothetical protein SDJN03_29031, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.9 bits (577), Expect = 8.9e-56
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGGKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19079 vs. NCBI nr
Match: XP_022930779.1 (protein translation factor SUI1 homolog [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFN QIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNGQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19079 vs. ExPASy Swiss-Prot
Match: O48650 (Protein translation factor SUI1 homolog OS=Salix bakko OX=72444 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-54
Identity = 102/113 (90.27%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEF+  IP+AFDPFA+ANAEDSGAG+K+YVHVR+QQRNGRKSLTTVQGLKK++SYNKIL
Sbjct: 1   MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19079 vs. ExPASy Swiss-Prot
Match: Q94JV4 (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.6e-54
Identity = 100/113 (88.50%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+  VQ+P+AFDPFADANAEDSGAG+KEYVH+R+QQRNGRKSLTTVQGLKKE+SY+KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19079 vs. ExPASy Swiss-Prot
Match: P41568 (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-53
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG+KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19079 vs. ExPASy Swiss-Prot
Match: A6MZM2 (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 9.6e-53
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSG--AGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
           MS+ ++QIP+AFDPFA+ANA DSG  AGSK+YVHVRIQQRNGRKSLTTVQGLKKEFSYNK
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKE+IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]

BLAST of Carg19079 vs. ExPASy Swiss-Prot
Match: Q0D5W6 (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=GOS2 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 9.6e-53
Identity = 103/115 (89.57%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSG--AGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
           MS+ ++QIP+AFDPFA+ANA DSG  AGSK+YVHVRIQQRNGRKSLTTVQGLKKEFSYNK
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKE+IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

[Close]

BLAST of Carg19079 vs. ExPASy TrEMBL
Match: A0A6J1JEL5 (protein translation factor SUI1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111486207 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]

BLAST of Carg19079 vs. ExPASy TrEMBL
Match: A0A6J1HZK0 (protein translation factor SUI1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468348 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.3e-56
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]

BLAST of Carg19079 vs. ExPASy TrEMBL
Match: A0A1S3C0V7 (protein translation factor SUI1 homolog OS=Cucumis melo OX=3656 GN=LOC103495584 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.3e-56
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]

BLAST of Carg19079 vs. ExPASy TrEMBL
Match: A0A6J1C5J4 (protein translation factor SUI1 homolog OS=Momordica charantia OX=3673 GN=LOC111007577 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.3e-56
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]

BLAST of Carg19079 vs. ExPASy TrEMBL
Match: A0A6J1GJN9 (protein translation factor SUI1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111454903 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.3e-56
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19079 vs. TAIR 10
Match: AT1G54290.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 211.1 bits (536), Expect = 4.7e-55
Identity = 100/113 (88.50%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+  VQ+P+AFDPFADANAEDSGAG+KEYVH+R+QQRNGRKSLTTVQGLKKE+SY+KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19079 vs. TAIR 10
Match: AT4G27130.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-54
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG+KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19079 vs. TAIR 10
Match: AT5G54760.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 208.4 bits (529), Expect = 3.1e-54
Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADAN EDSGAG+KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19079 vs. TAIR 10
Match: AT5G54760.2 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 208.4 bits (529), Expect = 3.1e-54
Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADAN EDSGAG+KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19079 vs. TAIR 10
Match: AT5G54760.3 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 208.4 bits (529), Expect = 3.1e-54
Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADAN EDSGAG+KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

The following BLAST results are available for this feature:

BLAST of Carg19079 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989016.1	3.1e-56	100.00	protein translation factor SUI1 homolog [Cucurbita maxima] >XP_022989017.1 prote...	[more]
KAG6572304.1	6.8e-56	99.12	hypothetical protein SDJN03_29032, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004144489.1	6.8e-56	99.12	protein translation factor SUI1 homolog [Cucumis sativus] >XP_008455418.1 PREDIC...	[more]
XP_022952139.1	8.9e-56	99.12	protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_02295214...	[more]
XP_022930779.1	2.0e-55	99.12	protein translation factor SUI1 homolog [Cucurbita moschata]	[more]

BLAST of Carg19079 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48650	3.0e-54	90.27	Protein translation factor SUI1 homolog OS=Salix bakko OX=72444 PE=3 SV=1	[more]
Q94JV4	6.6e-54	88.50	Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
P41568	1.5e-53	88.50	Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4...	[more]
A6MZM2	9.6e-53	89.57	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 G...	[more]
Q0D5W6	9.6e-53	89.57	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica OX=39947...	[more]

BLAST of Carg19079 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEL5	1.5e-56	100.00	protein translation factor SUI1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111486...	[more]
A0A6J1HZK0	3.3e-56	99.12	protein translation factor SUI1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468...	[more]
A0A1S3C0V7	3.3e-56	99.12	protein translation factor SUI1 homolog OS=Cucumis melo OX=3656 GN=LOC103495584 ...	[more]
A0A6J1C5J4	3.3e-56	99.12	protein translation factor SUI1 homolog OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1GJN9	3.3e-56	99.12	protein translation factor SUI1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Carg19079 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54290.1	4.7e-55	88.50	Translation initiation factor SUI1 family protein	[more]
AT4G27130.1	1.1e-54	88.50	Translation initiation factor SUI1 family protein	[more]
AT5G54760.1	3.1e-54	87.61	Translation initiation factor SUI1 family protein	[more]
AT5G54760.2	3.1e-54	87.61	Translation initiation factor SUI1 family protein	[more]
AT5G54760.3	3.1e-54	87.61	Translation initiation factor SUI1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005874	Eukaryotic translation initiation factor SUI1	TIGRFAM	TIGR01160	TIGR01160	coord: 6..113 e-value: 2.3E-56 score: 187.0
IPR005874	Eukaryotic translation initiation factor SUI1	PIRSF	PIRSF004499	Transl_init_SUI1_Euk	coord: 1..113 e-value: 3.0E-49 score: 164.0
IPR005874	Eukaryotic translation initiation factor SUI1	CDD	cd11566	eIF1_SUI1	coord: 29..112 e-value: 5.11399E-51 score: 153.845
IPR001950	SUI1 domain	PFAM	PF01253	SUI1	coord: 28..102 e-value: 3.5E-26 score: 91.5
IPR001950	SUI1 domain	PROSITE	PS50296	SUI1	coord: 31..101 score: 24.348866
None	No IPR available	GENE3D	3.30.780.10		coord: 1..113 e-value: 1.1E-48 score: 166.6
None	No IPR available	PANTHER	PTHR10388:SF52	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 1..113
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 1..113
IPR036877	SUI1 domain superfamily	SUPERFAMILY	55159	eIF1-like	coord: 4..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19079-RA	Carg19079-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003743	translation initiation factor activity