Carg19078 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19078
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein translation factor SUI1 homolog
Location	Carg_Chr11: 12252466 .. 12254980 (-)
RNA-Seq Expression	Carg19078
Synteny	Carg19078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAGGTTTGTGTGGCTTTCCAAATTTCTCTCTTATATATAATCCTCATTTTGACTTCCAGCCATTCAGTTTCACGTCTCTTCGCTCCGGATTCACACCTTTTTCTCCTGGTAAATTCTTGTTCATCGCTCTCTCCTTCATTTCATCTATGAAAGAAACCAATCCAATGTTTTTCATTTCTGTCCTTATTTTTTTTGTTTGGGTTTTTTTTCGTTTTTTTTTCACCCAAGGGTTCCTGTGCTTTTTTTCCCCAAAAATTCCATTTGTTTGTGGTTAGCGTTTTTTTTATATATATTTTTTTTTTGTTCTTTTTTTTAGCATGATCGAAGCACCAACACTAATCAGAGCTTACTTTCTGGGATTTTTCTGAGATGTAAGTGTTTTGATGTTTCTTAATCGAACCTTATACCTGGTTTGATTGTTATTGAGTGGCTTCTGTTTCTTTTAATATTTAATTTATGCACATTATTTTGATCCTCAATTTGGTTCTTCTGTCTGATAGGTTGCTTATGATTGTGTGTGTTTGGGTGTTTTTCTGTATTCTTAGCGAGATATTGGTAGAATTATTACCTTCTAATTTAGGTTGCGAAGACATGATTGGTTATCGGGTTCTTTTAATTGTTTGATCCCTTATAGAGCTTAAATTTCTTCAATTTGTTACCGTGGATTTGTAGAAAATTCATAAGTAGTGTAGTGAAAGTCTATCAACTTTGCTTTTATTGTTCATAACCTATGTTTTAATCTGCTAAGTTTTGGTTTCTGTTACTTTTATGATTGAGGTTTTGAATTGTTGAGTGTATGCGCTTTTGATCTTTGACAAAGAAGTCTGTATGGGCTGTGGGGATCGGGAGGATCAAAAATTGAAAACAGGACTTGGAGATATATGTAGATCATGGGTGGATCATATTGGTGCTTCGGTGTCTGCGGTTTCATTTCTGTTTCTTTTGTCTTTTGCAGTTTTGAGCGGCTTAATTGAGAGCGCATAATTTTTTTGCTGGTTACCTGTGTTCTACTACGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGGTAACGTCACAACTCCCTGTTCTTGGTTTTTACTTTTTAGTAAGTTTCATCGGTTGGTTTGATAATTTATTAATTGTATTTGATGGTCAGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTCCGGTCTCCATCTCCCTCCTTAAAATGATTTGTATTTATGCACCTAACATAAAAACTAAAAGAGACTAATAGTTTTCGATTTTGGATAATGTGGAGAGAAGGGTCATGTTGGGGTTAGTGTTAGAACTTAGAACAAATGGGGGAGCAAGAATAATGGTAAAAACAAACGAATCCAGGGCTCCCCAAACTAAGATAACCGAACGGGGTCCATTAGGCTTCTCCGAACAGACAATACAAACTTGCTTACTCTACCTCACTTGTCTTTCCTCGTGTATGTTAAGTGTCACAATCACACTTTGCTATGCCTATTTGCTTAGAGAAGGTATAGCATGACTGCGTGCGAATAGGCATAGCATACACGAGGGCAAACCAATATTGGTGGTTTGCTATGCCATCACGAACAAGAATTCTGAAGGTGTTATTAGCACTGCTACATATTGTGCGGTAATAGGATTTTGTCTCTTTTCATCTTTTCATTGAAAAGTTGGTTTCTTGCTTTTTAAAGAACACAATGGTAGGAACGCTTAGATGCATATACTTTTCTTTTTGCGGGGAAAATAAAAGTATCATCCCACTCCACAATCAATGACATCACTTGTAATGGAGTAGCTTTCTTTTATCAAATCTACTTGTTTTCCTTCCTCTTTCATTTGAATTTCCAAATCAGGTCCCGGCTACATGTCCTTTGGACTCTTTGCTTAGAAGTGGATTCGAACAACTGTGTGACAAGTATTTTCACTTTATGCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGTAATGAATGATTGAATATTATATAGTTGAGATGAGAGTGAATGATTGAGTATTATATATTGGTTCTCTTTTGTTTCCGCATTGTGATGATAGGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAAAGAGCTTCAAGGTTGAGAATTCTATTACTGTTTACAGCAGCTTAACTGACAGTAGTGGACATAATATATATATATATATATATATATATATATATATATATGATAGAACTACGTTTAGAAGTTGTGAGTGCATGTTACAACTCTGGATGCTTTGGTTTGTTGTTATGCAGACAGACCAAGTCATGGATTATTGTTATCATTATCATTA

mRNA sequence

TAGAAGGTTTGTGTGGCTTTCCAAATTTCTCTCTTATATATAATCCTCATTTTGACTTCCAGCCATTCAGTTTCACGTCTCTTCGCTCCGGATTCACACCTTTTTCTCCTGTTTTGAGCGGCTTAATTGAGAGCGCATAATTTTTTTGCTGGTTACCTGTGTTCTACTACGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAAAGAGCTTCAAGGTTGAGAATTCTATTACTGTTTACAGCAGCTTAACTGACAGTAGTGGACATAATATAACTACGTTTAGAAGTTGTGAGTGCATGTTACAACTCTGGATGCTTTGGTTTGTTGTTATGCAGACAGACCAAGTCATGGATTATTGTTATCATTATCATTA

Coding sequence (CDS)

ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAA

Protein sequence

MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF

Homology

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BLAST of Carg19078 vs. NCBI nr
Match: KAG6572304.1 (hypothetical protein SDJN03_29032, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19078 vs. NCBI nr
Match: XP_004144489.1 (protein translation factor SUI1 homolog [Cucumis sativus] >XP_008455418.1 PREDICTED: protein translation factor SUI1 homolog [Cucumis melo] >XP_008455419.1 PREDICTED: protein translation factor SUI1 homolog [Cucumis melo] >XP_011658706.1 protein translation factor SUI1 homolog [Cucumis sativus] >XP_022135675.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022135676.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022135677.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022135678.1 protein translation factor SUI1 homolog [Momordica charantia] >XP_022930780.1 protein translation factor SUI1 homolog [Cucurbita moschata] >XP_022952138.1 protein translation factor SUI1 homolog [Cucurbita moschata] >XP_022969300.1 protein translation factor SUI1 homolog [Cucurbita maxima] >XP_022989018.1 protein translation factor SUI1 homolog [Cucurbita maxima] >XP_023530208.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >XP_023554643.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >XP_038886949.1 protein translation factor SUI1 homolog [Benincasa hispida] >XP_038886950.1 protein translation factor SUI1 homolog [Benincasa hispida] >XP_038886951.1 protein translation factor SUI1 homolog [Benincasa hispida] >XP_038886965.1 protein translation factor SUI1 homolog [Benincasa hispida] >KAG6589173.1 hypothetical protein SDJN03_17738, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022875.1 hypothetical protein SDJN02_16611 [Cucurbita argyrosperma subsp. argyrosperma] >KGN43535.1 hypothetical protein Csa_020483 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 3.1e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19078 vs. NCBI nr
Match: XP_022989016.1 (protein translation factor SUI1 homolog [Cucurbita maxima] >XP_022989017.1 protein translation factor SUI1 homolog [Cucurbita maxima] >XP_023530206.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >XP_023530207.1 protein translation factor SUI1 homolog [Cucurbita pepo subsp. pepo] >KAG7022876.1 hypothetical protein SDJN02_16612 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19078 vs. NCBI nr
Match: XP_022952139.1 (protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022952140.1 protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022952141.1 protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022952142.1 protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_022969301.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_022969302.1 protein translation factor SUI1 homolog 2-like [Cucurbita maxima] >XP_023554644.1 protein translation factor SUI1 homolog 2-like [Cucurbita pepo subsp. pepo] >XP_023554645.1 protein translation factor SUI1 homolog 2-like [Cucurbita pepo subsp. pepo] >KAG6572303.1 hypothetical protein SDJN03_29031, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.9 bits (577), Expect = 8.9e-56
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAG KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGGKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19078 vs. NCBI nr
Match: XP_022930779.1 (protein translation factor SUI1 homolog [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 4.4e-55
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFN QIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNGQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19078 vs. ExPASy Swiss-Prot
Match: O48650 (Protein translation factor SUI1 homolog OS=Salix bakko OX=72444 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.9e-54
Identity = 102/113 (90.27%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEF+  IP+AFDPFA+ANAEDSGAG K+YVHVR+QQRNGRKSLTTVQGLKK++SYNKIL
Sbjct: 1   MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113

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BLAST of Carg19078 vs. ExPASy Swiss-Prot
Match: Q94JV4 (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.7e-54
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+  VQ+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY+KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

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BLAST of Carg19078 vs. ExPASy Swiss-Prot
Match: P41568 (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-53
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

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BLAST of Carg19078 vs. ExPASy Swiss-Prot
Match: Q9SQF4 (Protein translation factor SUI1 homolog OS=Brassica oleracea OX=3712 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-52
Identity = 98/113 (86.73%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++I+IHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113

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BLAST of Carg19078 vs. ExPASy Swiss-Prot
Match: A6MZM2 (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-52
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSG--AGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
           MS+ ++QIP+AFDPFA+ANA DSG  AG+K+YVHVRIQQRNGRKSLTTVQGLKKEFSYNK
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKE+IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

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BLAST of Carg19078 vs. ExPASy TrEMBL
Match: A0A6J1HZK0 (protein translation factor SUI1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468348 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]

BLAST of Carg19078 vs. ExPASy TrEMBL
Match: A0A1S3C0V7 (protein translation factor SUI1 homolog OS=Cucumis melo OX=3656 GN=LOC103495584 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]

BLAST of Carg19078 vs. ExPASy TrEMBL
Match: A0A6J1C5J4 (protein translation factor SUI1 homolog OS=Momordica charantia OX=3673 GN=LOC111007577 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]

BLAST of Carg19078 vs. ExPASy TrEMBL
Match: A0A6J1GJN9 (protein translation factor SUI1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111454903 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]

BLAST of Carg19078 vs. ExPASy TrEMBL
Match: A0A0A0K1M6 (SUI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044260 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]

BLAST of Carg19078 vs. TAIR 10
Match: AT1G54290.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 210.7 bits (535), Expect = 6.2e-55
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+  VQ+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY+KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19078 vs. TAIR 10
Match: AT4G27130.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 209.5 bits (532), Expect = 1.4e-54
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19078 vs. TAIR 10
Match: AT5G54760.1 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 208.0 bits (528), Expect = 4.0e-54
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADAN EDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19078 vs. TAIR 10
Match: AT5G54760.2 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 208.0 bits (528), Expect = 4.0e-54
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADAN EDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]

BLAST of Carg19078 vs. TAIR 10
Match: AT5G54760.3 (Translation initiation factor SUI1 family protein )

HSP 1 Score: 208.0 bits (528), Expect = 4.0e-54
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADAN EDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

The following BLAST results are available for this feature:

BLAST of Carg19078 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572304.1	3.1e-56	100.00	hypothetical protein SDJN03_29032, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004144489.1	3.1e-56	100.00	protein translation factor SUI1 homolog [Cucumis sativus] >XP_008455418.1 PREDIC...	[more]
XP_022989016.1	6.8e-56	99.12	protein translation factor SUI1 homolog [Cucurbita maxima] >XP_022989017.1 prote...	[more]
XP_022952139.1	8.9e-56	99.12	protein translation factor SUI1 homolog 2-like [Cucurbita moschata] >XP_02295214...	[more]
XP_022930779.1	4.4e-55	98.23	protein translation factor SUI1 homolog [Cucurbita moschata]	[more]

BLAST of Carg19078 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48650	3.9e-54	90.27	Protein translation factor SUI1 homolog OS=Salix bakko OX=72444 PE=3 SV=1	[more]
Q94JV4	8.7e-54	88.50	Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
P41568	1.9e-53	88.50	Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At4...	[more]
Q9SQF4	2.1e-52	86.73	Protein translation factor SUI1 homolog OS=Brassica oleracea OX=3712 PE=3 SV=1	[more]
A6MZM2	2.1e-52	88.70	Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 G...	[more]

BLAST of Carg19078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZK0	1.5e-56	100.00	protein translation factor SUI1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468...	[more]
A0A1S3C0V7	1.5e-56	100.00	protein translation factor SUI1 homolog OS=Cucumis melo OX=3656 GN=LOC103495584 ...	[more]
A0A6J1C5J4	1.5e-56	100.00	protein translation factor SUI1 homolog OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1GJN9	1.5e-56	100.00	protein translation factor SUI1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0K1M6	1.5e-56	100.00	SUI1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044260 PE=3 S...	[more]

BLAST of Carg19078 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54290.1	6.2e-55	88.50	Translation initiation factor SUI1 family protein	[more]
AT4G27130.1	1.4e-54	88.50	Translation initiation factor SUI1 family protein	[more]
AT5G54760.1	4.0e-54	87.61	Translation initiation factor SUI1 family protein	[more]
AT5G54760.2	4.0e-54	87.61	Translation initiation factor SUI1 family protein	[more]
AT5G54760.3	4.0e-54	87.61	Translation initiation factor SUI1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.780.10		coord: 1..113 e-value: 1.2E-48 score: 166.5
None	No IPR available	PANTHER	PTHR10388:SF52	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 1..113
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 1..113
IPR005874	Eukaryotic translation initiation factor SUI1	TIGRFAM	TIGR01160	TIGR01160	coord: 6..113 e-value: 2.2E-56 score: 187.1
IPR005874	Eukaryotic translation initiation factor SUI1	PIRSF	PIRSF004499	Transl_init_SUI1_Euk	coord: 1..113 e-value: 3.3E-49 score: 163.8
IPR005874	Eukaryotic translation initiation factor SUI1	CDD	cd11566	eIF1_SUI1	coord: 29..112 e-value: 4.63317E-51 score: 154.23
IPR001950	SUI1 domain	PFAM	PF01253	SUI1	coord: 28..102 e-value: 3.2E-26 score: 91.6
IPR001950	SUI1 domain	PROSITE	PS50296	SUI1	coord: 31..101 score: 24.348866
IPR036877	SUI1 domain superfamily	SUPERFAMILY	55159	eIF1-like	coord: 4..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19078-RA	Carg19078-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003743	translation initiation factor activity