Carg19072 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19072
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L6
Location	Carg_Chr11: 12216030 .. 12218378 (-)
RNA-Seq Expression	Carg19072
Synteny	Carg19072

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATAACTGGTTCTGTCAAACTGGGTGTTCACTGTAATAGGCTATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGGTATAACTCCTAATTTTGCTCTAATGATTGTCTTTCTGGGTTCAAGCCTATTAGTGGCCATTGGTAGACTTCGTATTTTATGATTATAAAATTTTCTGAACAAGCTCGGAAGTTCGTCTTAATTGGGTTCCCTTTCTAACTGTGTAGACGTTCTACTCTTACATATTGCATTTGTGGAGTGTGAAGTCTCGAATAGACCATAATGGTCAGCAAAGGTTTTTCCTTTTGCGTTCAACTTGTTCGTCTTAGTGCACATTTCCTTGGGATGTGAATTTGGGGGTTTCCGGTCATCGTTATCTTCTTTTATCTTGCCAAGCCTCAGAGTTGAGTTTTTGGTTTTCCTGATATGAGTCAGCCGGTCTGGAGATTATTGGAGGCTACAGTGCTCGCTATTTGGTTGCTTTAGAAGTTGTCGTACTTTGAGGATATCTTTCCTAGACCTTTGGAAACTTTTTTGGAGAACCATCCTCAATGTATCTAGATGATTTTCTAATTCTAGGAATTTTTTGAAATTATTTCTATTTCATATTCAAGACTTCAAGTCAATTGGAAAATTTCTTGAAACTTATCAGCTGACTGAAGTTATGTCTTCCATTTGGGTTTAATTATGAATTAGAAAATTATCTTTAATTTCTTTGTCGTGTTTTCTTAGAGAGACGCTCTCCTAAAAACGTGAAATTTTCTACTGGTCATTAAGTCATTAAGGTGTGTAAATTACACGGATGGAATTTAGAGGAAGTGTCCTTCCATGTTCCTCAATTCTAGTTGTGTTTGTATGTTGTCCTTACACTGTGGCTGTATGGTACAAAACAAGTTCTGCCATACCACCACCAATGTGGAGATTTCGATTCTCTGCTGTTTGAATATGTTATTTAGTGCTAAACTATTACACTGTCCTTTGATTGACTTTTGTGTGTTTTGAACCCTTCAGCCATCACTAACAATGGACGTCTACACATTACCTTTCTTTTCTGCTATAGACTGGGCTCCTTATAGTTGGCTTAGAGAGTGTGTCAAGCATAGAGTTTGTTCAATGTTAGTCGTGGTTGTCTTTTATTTAATCATTAAGCTCTTTTTTGTAAGAAGGAAACGTTCTTAAATTTGAAACCATTTTCCTTATTGTGGCTCAGCAATTTTCGGTCTACTTTTTTGGGAGAGAAAAATGGATTCTCTGCTTCTACAATGCCTGTATCTCATATTGTTCGCTTGAGGAAGACTATTGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTACAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCACTCCTTTATCCACGAGAAGTGAAGATTGAGAGGGATGATTCAGGGATCTTAAGGGTTAAGAAGGCACTGGAGACTAGGAGAGCCAACCAAATGCATGGGCTTTTCAGGTAACCTCCACCTAATTTAATTTACAATATTTTCACAGTAACCGATTAAGTTTAATCTTCTGAAACATTTAGCTTTTGTTTTTCTTCCTCTTAAGTTTTAGTTTACATGGATCACTTCCTATATGTATCTTCTCCAAAATTTGGTTGCCTCCTATGAAGATGCCTACTTGCCTCGCTAATCAAGTTGGTCATCTTTTTCATAAATTATGATCTGAAAAATGCTTTTATGGATGAGAATACTAACGGAGTGGCCAACTCTAGATATTCCCTCCTTTCTAATGATTATCTGTGGACTGCTAGAAAGAAACCAACTAAAATATCTTAAAATTCTGAAAACCCAAAACCACTTCATGCTATGAATGCAAACAACCAGCCATTGTTCCTTCATTTGTAATACAGATGAATGATGTCTGATGGAAAAAGAGTAATAAATGATGTACTCTGAGAAAATGCAGCTGTCGTGTCATATATGACCATTTCAACTGATTTATTCAGGACCCTTACAGACAATATGGTGGTAGGAGTGTCCAAGGGGTTTGAAAAGAAACTTCAATTGGTAGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGACGGGCTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACCGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCTCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGA

mRNA sequence

ATATAACTGGTTCTGTCAAACTGGGTGTTCACTGTAATAGGCTATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGCAATTTTCGGTCTACTTTTTTGGGAGAGAAAAATGGATTCTCTGCTTCTACAATGCCTGTATCTCATATTGTTCGCTTGAGGAAGACTATTGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTACAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCACTCCTTTATCCACGAGAAGTGAAGATTGAGAGGGATGATTCAGGGATCTTAAGGGTTAAGAAGGCACTGGAGACTAGGAGAGCCAACCAAATGCATGGGCTTTTCAGGACCCTTACAGACAATATGGTGGTAGGAGTGTCCAAGGGGTTTGAAAAGAAACTTCAATTGGTAGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGACGGGCTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACCGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCTCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGA

Coding sequence (CDS)

ATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGCAATTTTCGGTCTACTTTTTTGGGAGAGAAAAATGGATTCTCTGCTTCTACAATGCCTGTATCTCATATTGTTCGCTTGAGGAAGACTATTGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTACAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCACTCCTTTATCCACGAGAAGTGAAGATTGAGAGGGATGATTCAGGGATCTTAAGGGTTAAGAAGGCACTGGAGACTAGGAGAGCCAACCAAATGCATGGGCTTTTCAGGACCCTTACAGACAATATGGTGGTAGGAGTGTCCAAGGGGTTTGAAAAGAAACTTCAATTGGTAGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCTGTTAGAATGGCCATTCCTGACGGGCTTCAAGTAAAGGTGGAAGAAAACACCAGAATTACCGTCAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCTCCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAGTGA

Protein sequence

MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK

Homology

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BLAST of Carg19072 vs. NCBI nr
Match: XP_022930652.1 (50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata] >KAG7022869.1 50S ribosomal protein L6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.4 bits (1147), Expect = 1.4e-121
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

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BLAST of Carg19072 vs. NCBI nr
Match: XP_023530191.1 (50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 442.6 bits (1137), Expect = 2.1e-120
Identity = 223/226 (98.67%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTLSIPFQTSNFRSTFLGEKNGFSAST+PVSHIVRLR+TIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTVPVSHIVRLRRTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TITLQGQDLKVKGPLGELSLLYPREVKIERDD+GILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDAGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

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BLAST of Carg19072 vs. NCBI nr
Match: XP_022988916.1 (50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 442.2 bits (1136), Expect = 2.7e-120
Identity = 223/226 (98.67%), Postives = 225/226 (99.56%), Query Frame = 0


Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MV+GVSKGFEKKLQLVGVGYRA+LEGKDLVLNLGFSHPVRMAIPDGLQV VEENTRITVS
Sbjct: 121 MVIGVSKGFEKKLQLVGVGYRAILEGKDLVLNLGFSHPVRMAIPDGLQVMVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Carg19072 vs. NCBI nr
Match: XP_022136314.1 (50S ribosomal protein L6, chloroplastic [Momordica charantia])

HSP 1 Score: 425.2 bits (1092), Expect = 3.4e-115
Identity = 214/226 (94.69%), Postives = 219/226 (96.90%), Query Frame = 0


Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTL+IPFQTSNFRSTFLGEKNGFS STMPV HI  LRKTIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLTIPFQTSNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
            I LQGQDLKVKGPLGELS+LYPREVKIER+DSGILRVKKA+ETRRA QMHGLFRTLTDN
Sbjct: 61  IIALQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVS+GFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS
Sbjct: 121 MVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Carg19072 vs. NCBI nr
Match: XP_022930651.1 (50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 424.9 bits (1091), Expect = 4.5e-115
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 13  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 72
           NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK
Sbjct: 32  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 91

Query: 73  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 132
           GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK
Sbjct: 92  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 151

Query: 133 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 192
           LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA
Sbjct: 152 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 211

Query: 193 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 212 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

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BLAST of Carg19072 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.0e-93
Identity = 172/226 (76.11%), Postives = 196/226 (86.73%), Query Frame = 0


Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MAS+L   FQ    RS FLG++N F  S+ P + +    KTIECKESRIGKQPI VPSNV
Sbjct: 1   MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TI L+GQDLKVKGPLGEL+L YPREV++ +++SG LRVKK +ETRRANQMHGLFRTLTDN
Sbjct: 61  TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IPD L+VKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDK  IGQFAA++R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 181 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of Carg19072 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-90
Identity = 167/222 (75.23%), Postives = 193/222 (86.94%), Query Frame = 0


Query: 5   LSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITL 64
           +S+P   S+ +S FLG K   S S +PV+ I   RK+++CKESRIGKQPI VP+NV I +
Sbjct: 1   MSLPL-PSHMKSVFLGMKVEISTS-VPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAM 60

Query: 65  QGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVG 124
           +GQDLKVKGPLGELS+ YPREV +E+ +SG LRV+KA+ETRRANQMHGLFRTLTDNMVVG
Sbjct: 61  EGQDLKVKGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVG 120

Query: 125 VSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDK 184
           VSKGFEKKLQLVGVGYRA +EGKDL+L+LGFSHPVRMAIPD LQVKVEENT++TVSG DK
Sbjct: 121 VSKGFEKKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDK 180

Query: 185 CAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
             +GQFAA+IR WRPPEPYKGKGV+Y DEVVRRKEGKAGKKK
Sbjct: 181 SVVGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

[Close]

BLAST of Carg19072 vs. ExPASy Swiss-Prot
Match: B0C1E7 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-51
Identity = 105/179 (58.66%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 47  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRR 106
           SRIGK PI +P  V +T++GQ + VKGP GELS     EV IE+ D+ ++ V +  E+R 
Sbjct: 2   SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADN-LVTVTRRNESRI 61

Query: 107 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDG 166
           A Q HGL RTL  NMV GVSKGFEKKLQ+ GVGYRA ++G++L+LN+G+S+PV +  P+G
Sbjct: 62  ARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEG 121

Query: 167 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 226
           +QV VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 122 VQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

[Close]

BLAST of Carg19072 vs. ExPASy Swiss-Prot
Match: B7KI01 (50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rplF PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 8.1e-51
Identity = 101/179 (56.42%), Postives = 128/179 (71.51%), Query Frame = 0


Query: 47  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRR 106
           SRIGK+PI +P+ VT+ + G  + VKGP GEL    P  V +E+D+ G+LRV +  ++R 
Sbjct: 2   SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVEQDE-GVLRVVRQDDSRT 61

Query: 107 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDG 166
           A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSG 121

Query: 167 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 226
           + V VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  EVVRRK GK GKK
Sbjct: 122 IGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKTGKK 179

[Close]

BLAST of Carg19072 vs. ExPASy Swiss-Prot
Match: B1WQS5 (50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplF PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.2e-50
Identity = 98/179 (54.75%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 47  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRR 106
           SRIGK+PI +P+ VTI ++GQ + VKGP G L L  P EV + ++   +  V++  ++R 
Sbjct: 2   SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGETV-EVQRVDDSRT 61

Query: 107 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDG 166
           A + HGLFRTL  NM+ GVS+GFEK+L + GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQG 121

Query: 167 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 226
           + V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y DE VRRK GKAGKK
Sbjct: 122 INVAVENNTQVVVSGIDKEIVGNIAAKIRGVRPPEPYKGKGIRYQDEYVRRKAGKAGKK 179

[Close]

BLAST of Carg19072 vs. ExPASy TrEMBL
Match: A0A6J1ER61 (50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 6.9e-122
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Carg19072 vs. ExPASy TrEMBL
Match: A0A6J1JIK5 (50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486127 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.3e-120
Identity = 223/226 (98.67%), Postives = 225/226 (99.56%), Query Frame = 0


Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MV+GVSKGFEKKLQLVGVGYRA+LEGKDLVLNLGFSHPVRMAIPDGLQV VEENTRITVS
Sbjct: 121 MVIGVSKGFEKKLQLVGVGYRAILEGKDLVLNLGFSHPVRMAIPDGLQVMVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Carg19072 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115
Identity = 214/226 (94.69%), Postives = 219/226 (96.90%), Query Frame = 0


Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MASTL+IPFQTSNFRSTFLGEKNGFS STMPV HI  LRKTIECKESRIGKQPIQVPSNV
Sbjct: 1   MASTLTIPFQTSNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
            I LQGQDLKVKGPLGELS+LYPREVKIER+DSGILRVKKA+ETRRA QMHGLFRTLTDN
Sbjct: 61  IIALQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVS+GFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS
Sbjct: 121 MVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Carg19072 vs. ExPASy TrEMBL
Match: A0A6J1ERI9 (50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.2e-115
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 13  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 72
           NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK
Sbjct: 32  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 91

Query: 73  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 132
           GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK
Sbjct: 92  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 151

Query: 133 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 192
           LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA
Sbjct: 152 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 211

Query: 193 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 212 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]

BLAST of Carg19072 vs. ExPASy TrEMBL
Match: A0A6J1JKX3 (50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486127 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 211/214 (98.60%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 13  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 72
           NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK
Sbjct: 32  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 91

Query: 73  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 132
           GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMV+GVSKGFEKK
Sbjct: 92  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVIGVSKGFEKK 151

Query: 133 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 192
           LQLVGVGYRA+LEGKDLVLNLGFSHPVRMAIPDGLQV VEENTRITVSGYDKCAIGQFAA
Sbjct: 152 LQLVGVGYRAILEGKDLVLNLGFSHPVRMAIPDGLQVMVEENTRITVSGYDKCAIGQFAA 211

Query: 193 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 212 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]

BLAST of Carg19072 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 344.4 bits (882), Expect = 7.1e-95
Identity = 172/226 (76.11%), Postives = 196/226 (86.73%), Query Frame = 0


Query: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60
           MAS+L   FQ    RS FLG++N F  S+ P + +    KTIECKESRIGKQPI VPSNV
Sbjct: 1   MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 60

Query: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120
           TI L+GQDLKVKGPLGEL+L YPREV++ +++SG LRVKK +ETRRANQMHGLFRTLTDN
Sbjct: 61  TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180
           MVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IPD L+VKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 227
           GYDK  IGQFAA++R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 181 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of Carg19072 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 129 FEKKLQLVGVGYRAMLE--GKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCA 188
           F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 189 IGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK 225
           + QFAA++R  +PPEPYKGKG+ Y DEVV++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

The following BLAST results are available for this feature:

BLAST of Carg19072 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930652.1	1.4e-121	100.00	50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata] >KAG7022...	[more]
XP_023530191.1	2.1e-120	98.67	50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022988916.1	2.7e-120	98.67	50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita maxima]	[more]
XP_022136314.1	3.4e-115	94.69	50S ribosomal protein L6, chloroplastic [Momordica charantia]	[more]
XP_022930651.1	4.5e-115	100.00	50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg19072 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23049	1.0e-93	76.11	50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ...	[more]
P82193	1.4e-90	75.23	50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=...	[more]
B0C1E7	2.8e-51	58.66	50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]
B7KI01	8.1e-51	56.42	50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN...	[more]
B1WQS5	5.2e-50	54.75	50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) O...	[more]

BLAST of Carg19072 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ER61	6.9e-122	100.00	50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JIK5	1.3e-120	98.67	50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1C3Z5	1.7e-115	94.69	50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1ERI9	2.2e-115	100.00	50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JKX3	4.1e-114	98.60	50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Carg19072 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05190.1	7.1e-95	76.11	Ribosomal protein L6 family	[more]
AT2G18400.1	1.5e-20	47.96	ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 117..142 score: 61.66 coord: 145..161 score: 49.15 coord: 187..208 score: 66.42
IPR019906	Ribosomal protein L6, bacterial-type	TIGRFAM	TIGR03654	TIGR03654	coord: 47..222 e-value: 4.5E-71 score: 236.2
IPR019906	Ribosomal protein L6, bacterial-type	HAMAP	MF_01365_B	Ribosomal_L6_B	coord: 46..222 score: 36.980522
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 129..226 e-value: 4.3E-41 score: 141.0
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 45..128 e-value: 8.0E-26 score: 92.3
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 47..128
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 129..222
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 56..128 e-value: 2.1E-14 score: 54.0 coord: 136..210 e-value: 3.0E-19 score: 69.5
None	No IPR available	PANTHER	PTHR11655:SF38	BNAA10G03220D PROTEIN	coord: 1..226
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..226
IPR002358	Ribosomal protein L6, conserved site	PROSITE	PS00525	RIBOSOMAL_L6_1	coord: 200..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19072-RA	Carg19072-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome