Carg19066 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19066
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein RRP6-like 3 isoform X1
Location	Carg_Chr11: 12175995 .. 12182660 (-)
RNA-Seq Expression	Carg19066
Synteny	Carg19066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAACGAAGGAAAAAACGAGAACGGAGCCATTGATTCTAATGGAGCTTCATCGCAAGGCCAAAATCGCTTTAGTTGTAGCGTCTCTTGCAGCGCTAACAATCTACTTTACGGCCAGACGGCGCCGGAAGCAGAGGAGCGTTCGTAGTTCGTGTTATTTGCGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACATTTGAAGCTCGATATGAATACAGGTGAAGTTAGTCGGTTACTCTATTTCAAATATGATATTGTGTTTAGCTGCTGAGACTTTGAGTCATGTTATTAGAAGCAAATGGAGAGTTTAATGAATGAACGATATGATAAAGAGCTGTGATTTAGTTTTTTTATTGGATTTAGCAACCTTAATCTAAGTTGTTAATTGCATTTAGAAATGTTCGTTTGGGAAATGATGATTTATGTGCTTTTCAAGCTGAATAATTTCCATGGAGCAATAGGATATAGGGAAATGAAAATCTGGAATATTCTTGTATTGTTTTCTAATTTAATAGTTGGCGAAAAGTTGTCATAAGTATTTGAAATTTACTCTTGTTAGGATTATTAGCAACAATTCTTTCATGAATGGCTTTCATTTGTCTTCTCGTCAATCTTCAAGCTCCATTTTTCGTAAAAGATTTTGCAATGGTAGCTCTCAATGTTCTTACAAGGGGGTTGGCTGAGTGAAGTGAGTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGCAGACAATGATGTAAACTCTCATCCCTACGAATCAGAAATACTATCGTTGTTGGAAAATTCTTCGTCAGAATTTGATTTTATTAGTAGTGAAAGAAACGGTTTTACTTTGAGTGGCACTTATGTTTGGGTTGAGACCGCTTCTCAATTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCTTTTCTGGGCTTCACTGCTTTAGTACAGGTAATTTACTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAAACACACACTCTCAAAGGGCCTCTGTACACGTAAATGGATGAATCTTTCCTCACAATCCCCGTCTATTTAATTGTCACGTTCATGTTTTTGTCTTTTTATTTTGTTTGAAGCAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCGATGAGTCTTCTACGTCCCGTCTTTGCCAATAGTCATATTTGCAAGGTACCGAAATATGTGCTTGGGTACTGGTTTAAGGATTTGATTTCTGACAAGCTTGGTATCTAGATTAAAAGCAATGTTTCAGAACCCCATCAATTTGGTATTGATGAGAAAAGTGAAGCAGTTGCATCAGCTGGAGGAATTCTATTGATTCTCTTCTTTGGGTTAATGTTTTATTTGGTATTAGAAAACTTTAGTTTATGAATGCAAGGTACCCATTAAATTAGTTTTTGTGTTTAGGTGTTTCATGGTGCTGATAATGACATTCTCTGGCTACAAAGGGACTTCCACATATATGTAGTCAATTTATTTGACACTGCGAAGGTGAGGATATGCTTTTTAAAGGAAAGAAATATTACCTATATAAGGAGGAAATATGGAGCTATGCACTTCTCATGTGTGAAAGAGTGAGAGGTCTTTCTTTTTTTTTTTCCCTGTTTTCATCTTGTGCTTGTTGTTACAATGTAGGCCTGTGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTAGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGGTTGGACATCTTGTCTTGAAAATGCACTATGTTGTATGAGAATCAACATCTTGATCATCTGATTTCGTATGTAAGATAACTATAGTGGTTGTAGGCATTTGATGCTGAAATATTAATTTTCCTGATTATACTTATAAGAATTTGTGAAACAAGCATTTTATAACATGTCTATCGTCATGTTCTATTCTATTTGAAAATAGTGACGTCGCACTAGTTGCATGTTTGACTGTCCAAGATTGCCATAGAGCTATTTCAAATGATGTGTAAATTTACTAAACCTATTTTACTTACAGCCTCAACTTAAATAAGATAAGGATTGATCATATCCTATCTTGTTATACATATAACGGCCTTTTTGGTCTTGCTTATTTGTGGTTATTCATTAATGGTCAGCGAGAAGATTGGAGACTAAGACCCCTATCAGAAGATATGGTGCGGTATGCTAGGACAGATGCCCACTACCTCCTACATATTGCAAACTGTTTACTTTCTGAGCTGAAACAGGTTAATGGTATGTCTTGGATCCGTTTGTGTTTGCTGCCATTCATTTTTTTTTTTTTTGTATAAGTTGTACTGTAAATGTGGAGAAATAAAAATGGATGGAAGATGAACATGATGATAACTAGAAATAAGGAAGAAAATAGGGCCATACTCGAGTAATGTATTAAAAGATTTTGTTAACTTATTGTGCAGTTTTCATAATAGATTCAATAGTGCAAATATTATCATCGATATTTTTTTTAACATTAATGTCTTAATATCGGTGAGCCACATTTCTCTACCATCTTCTGAAGATGTGAAATTTTTTAATTAAAAAATGGTTTTAGATATTGATTCACGCGCATTCTTTTTATGGCATGGTAGACAAAATGTAGAATTATGTATAATTTATTTGAGTGGCTTTAAAATTTTATTTATCAATTCAATTTTATTTTTCTTATAAACTACAATGATTTCGTTATTTTTTTAGGATTGTTCATTGATACTCAGCATCCATGTTCCATTAAGTTTGAGATTTTGATATTTTGGTTGATATCGATATATCAATATTTACTTCTTGCTCGTTCTTCGCATATTCCCATTTCTCATATCATGACTTTGACATTTTCATCTTTGATTACTCCAAACATTCGGGAAAAAAGCCTTTAAGGCCAGAGGCAGAGTAATTAACATTTTAATTGGCTACCTTCAAATTATATATCATCCCATATCATTAGATATCTAAATGCATTAATGTAGCAGAAAACTCTTCCACGATGGTAAATTCAATTTTCTTCTTGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTTTACACAAAAGAGACTGAAGGGTCTCCTGGAGAGTCTGCTGCATCATCAATATTTTACCGTCATCTAAAACAGTCAATTAAATTCCTTTAAAACTCAAGTGAGCTGCTTTCTCAACAACTTTGTGTTATATCATTTGAAGTAGTACCACAATACAAAATTTTGAAATTCTATTACCTGACTTTGAAACTTTCAGTTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGTCAGTAGTTTAATCATCATAAAAAAATGAAGAACATAATTGCTTATTCTCTAAGCTTTTTATATTTATTTTATTTTGAAATTTTTATCAATTTGATCTTACTCCGTTAGGTATTTTATGTCTAAGGGGGGTTTCGTGTTTCTAATTGAGAAGGAACCATTTTTGGTACTTAGTAAATAGCTTGTGTTAATTCTTTATAGGATGGACGCTAGGGTTTGGTTCACTAAGTGTTTTTAAGACTCGCTAGATTCCCTAAAATTTCATCTATAAATGTAAAATATTCGATGGGAGAGCATTTCATTTCAAATTTGTATAATGGTATGGTTCGGAAGAAGACTTCTATTAAGGCAACCGTGGGCTTTTCCACCAACCTCTAATAGTAGTTTTTCTCTTAATATCTAATGTGCCCACCTCTAAAAAGTTGATATTGACCTTTTACTGTAAATACTCCCACAGTAGTTGGTTGCTTAGGTTGAGAAGTAACCTTCCAGATGGCGAGACAGAAGATTGGGTCTCTGTGATGAACTCTTTGGAAGTTTAATCATGACACCTTAGTGAGGATCCAAATTTTATTGTATGAAGATTGGATGTTTATTTATTTATTTTTTGATAGGAAACAAAAGAAAATTAAATGAAAGAAGATTGGACGTTAAAGGAGCATACTTGACTATGTTGTTCTATAGTCATCTTACAAATAGGGAAAATCTTTTTTCTAAATAGGTGGCTAGAGTTATAGGCAGGAATACATATTCCAAAAAGGTCAAAATCTTTATATGGTCTCTAGTTCTAAAAGACGGCTGTCATTTGAAAGAGAAATGATCTCAATTGCCTCTTTCCAATTTGGCTAAAAATTAGACATCCTGAAGGTTAGACTTGTTACTTCATCGTTGAGCCTGACTCATTACCACCTTTGTTACCGGTTCCTTCTGCTTATAAGGACCATAATAAGTAAATTAACTATGATGGTTGCTTTTTAGCAAACGGAAGTTCCACTATGGCTGCTTACCTGAATCTGAGATTGTCATTTCATTTCAGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTATAGCTCTTGCTACTCAAATGTCAAAAAATACGAGGGAGTTATATGCAACTATTGCACAAGCTGATTTGAATGTGGATTTGAGCCCGAGTCTGCTTCTTCCAGGCCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTTCTCCGTGACAAGTCTGGTGACCTGGATAATATATTTTTGGGGATTTTACAAAAACTGTATAGGTTCTAATGGCAGTTGTCCCCTTTCTATATTTAATTATGCCCTGTTGGTCAAGTATAATCTAAAAATGATGACAATATCTTAGAAAAAATGATAGAAGAAAACGCAAAGAAAATGTCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGGGCGCTTGCTTTGCTACTGTGATCGGCGAAAACTTGAATGGTGGTTAGCATCTCTTAGTTTATTTCATGCAAGTTATAATTAAAACTGGTTATGCAATTGTGTTTGACAACATGCAACTATCTTTGTATTTAAACAGGTATTTGCGGCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGATTCTTTTGAAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTTTATATCCAGAGCAAAAGAATATATGTGTTGGTTGTGGTGAAGGAAACCACTATTTACGTATCGAATAATCCCCCTCATTGCTACAGAATACATTTTCCTGAGCATTTAAAAGTCATCGTTCCCATGATATTTGTCTTACTTTGTGTGGATTGTTCATGGAGTATGCCCATGCTGCTTGCCTGAGAAGCACAAGAGAGATTCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACCAAGGAGGCCTTTGATTTAGTTGAGTCATCTGACTCGGCCACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTAAGAACAGCTGCTATGGCCCTGTTGCGGATGGACCACAGGATGCCACCAAACGTCAAAGAGGCACTCAGCATGTATGCTGTTGTGTACTTTGCAATTGAGATAGTCTTCGTATATGTGTCTATGTATATGTGTCCATGTGATTTAGAAATAAACATGCAGTTCAATGCTTGAGATACTAATAATTGACTCGAGTCATCTGCTATCGTAGCCATTGAAAAGATCTTTGGTTTCATGATATCAAATGCTTAATCATTTAATAGTGCTCCATCTTGGTAGAAATTTATCATTCAAGATTTTCTTGGTGCTATAGGATTAAATTAATCATCAATTATAGTAATTAGCATGTTTTCATATTCTCCATCAGTAGTTTGAGACGGTGAAGAAGGTCCTGAACATCATTCATTAGTATGCTGTAGGTATTGGCCCTTTGTAGACAATGGTTTTTAGTTATGTAGTTCCCATTCTTGTAGAATCTTCAGTAACACCCGGTAATTGTTGATTATCAATCCCTCTGAAATTCAAATTATATATTTTCCTCATCTCTCCTATCTTTGTTGTGTTTTCAGGTTGTTATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGACGACTTCAGAAGAAAAAGGGTATAGCTTTGAAACATTCAGGACAGCATATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGTAGCATTGACTCATCGACTGTGACTAATTCATCCATTGGTATGTGCAGACTAGTTCGCTTTTGCTGATACATGTATTTTGCAAACGATAAAATGTTGTTCATAAGGGCGGAAAATAAGTACTTCAAGCAGTCATTCTTTCTGTTCTAATTCAATGCAGATGCAGATGCAGATGTTAACAATCACATGAACTCAGATAATGGTACCGTGCCCGAAACATGTTTGCCTTGTGGAGAGGTCAAAGTTTCTGATAACGGCTCCGCCATAACTGCTCAACCTAAATTTCAATTCTAATTGTCACTTTGGACATGGACCCACATGGTTAACAAGTAGTGCGATCATCTACTTGCAGAAATGTATGCGAGAGGATGGACATTTCCTCGTACAGTTCTTTGCAAAGGTGAGACAAGTGTTTTGTTGTGCTATTCAACTCTCGTCTTACCCCGCTAGGTTGGATTGATTCAACCACAGCGGT

mRNA sequence

AAAGAACGAAGGAAAAAACGAGAACGGAGCCATTGATTCTAATGGAGCTTCATCGCAAGGCCAAAATCGCTTTAGTTGTAGCGTCTCTTGCAGCGCTAACAATCTACTTTACGGCCAGACGGCGCCGGAAGCAGAGGAGCGTTCGTAGTTCGTGTTATTTGCGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACATTTGAAGCTCGATATGAATACAGACAATGATGTAAACTCTCATCCCTACGAATCAGAAATACTATCGTTGTTGGAAAATTCTTCGTCAGAATTTGATTTTATTAGTAGTGAAAGAAACGGTTTTACTTTGAGTGGCACTTATGTTTGGGTTGAGACCGCTTCTCAATTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCTTTTCTGGGCTTCACTGCTTTAGTACAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCGATGAGTCTTCTACGTCCCGTCTTTGCCAATAGTCATATTTGCAAGGTGTTTCATGGTGCTGATAATGACATTCTCTGGCTACAAAGGGACTTCCACATATATGTAGTCAATTTATTTGACACTGCGAAGGCCTGTGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTAGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACTAAGACCCCTATCAGAAGATATGGTGCGGTATGCTAGGACAGATGCCCACTACCTCCTACATATTGCAAACTGTTTACTTTCTGAGCTGAAACAGGTTAATGAAAACTCTTCCACGATGGTAAATTCAATTTTCTTCTTGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTTTACACAAAAGAGACTGAAGGGTCTCCTGGAGAGTCTGCTGCATCATCAATATTTTACCGTCATCTAAAACAGTCAATTAAATTCCTTTAAAACTCAATTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTATAGCTCTTGCTACTCAAATGTCAAAAAATACGAGGGAGTTATATGCAACTATTGCACAAGCTGATTTGAATGTGGATTTGAGCCCGAGTCTGCTTCTTCCAGGCCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTTCTCCGTGACAAGTCTGGTGACCTGGATAATATATTTTTGGGGATTTTACAAAAACTGTATAGGTTCTAATGGCAGTTGTCCCCTTTCTATATTTAATTATGCCCTGTTGGTCAAGTATAATCTAAAAATGATGACAATATCTTAGAAAAAATGATAGAAGAAAACGCAAAGAAAATGTCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGGGCGCTTGCTTTGCTACTGTGATCGGCGAAAACTTGAATGGTATTTGCGGCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGATTCTTTTGAAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTTTATATCCAGAGCAAAAGAATATATGTGTTGGTTGTGGTGAAGGAAACCACTATTTACGTATCGAATAATCCCCCTCATTGCTACAGAATACATTTTCCTGAGCATTTAAAAGTCATCGTTCCCATGATATTTGTCTTACTTTGTGTGGATTGTTCATGGAGTATGCCCATGCTGCTTGCCTGAGAAGCACAAGAGAGATTCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACCAAGGAGGCCTTTGATTTAGTTGAGTCATCTGACTCGGCCACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTAAGAACAGCTGCTATGGCCCTGTTGCGGATGGACCACAGGATGCCACCAAACGTCAAAGAGGCACTCAGCATGTTGTTATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGACGACTTCAGAAGAAAAAGGGTATAGCTTTGAAACATTCAGGACAGCATATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGTAGCATTGACTCATCGACTGTGACTAATTCATCCATTGATGCAGATGCAGATGTTAACAATCACATGAACTCAGATAATGGTACCGTGCCCGAAACATGTTTGCCTTGTGGAGAGGTCAAAGTTTCTGATAACGGCTCCGCCATAACTGCTCAACCTAAATTTCAATTCTAATTGTCACTTTGGACATGGACCCACATGGTTAACAAGTAGTGCGATCATCTACTTGCAGAAATGTATGCGAGAGGATGGACATTTCCTCGTACAGTTCTTTGCAAAGGTGAGACAAGTGTTTTGTTGTGCTATTCAACTCTCGTCTTACCCCGCTAGGTTGGATTGATTCAACCACAGCGGT

Coding sequence (CDS)

ATGGAGCTTCATCGCAAGGCCAAAATCGCTTTAGTTGTAGCGTCTCTTGCAGCGCTAACAATCTACTTTACGGCCAGACGGCGCCGGAAGCAGAGGAGCGTTCGTAGTTCGTGTTATTTGCGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACATTTGAAGCTCGATATGAATACAGACAATGATGTAAACTCTCATCCCTACGAATCAGAAATACTATCGTTGTTGGAAAATTCTTCGTCAGAATTTGATTTTATTAGTAGTGAAAGAAACGGTTTTACTTTGAGTGGCACTTATGTTTGGGTTGAGACCGCTTCTCAATTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCTTTTCTGGGCTTCACTGCTTTAGTACAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCGATGAGTCTTCTACGTCCCGTCTTTGCCAATAGTCATATTTGCAAGGTGTTTCATGGTGCTGATAATGACATTCTCTGGCTACAAAGGGACTTCCACATATATGTAGTCAATTTATTTGACACTGCGAAGGCCTGTGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTAGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACTAAGACCCCTATCAGAAGATATGGTGCGGTATGCTAGGACAGATGCCCACTACCTCCTACATATTGCAAACTGTTTACTTTCTGAGCTGAAACAGGTTAATGAAAACTCTTCCACGATGGTAAATTCAATTTTCTTCTTGAGGCTAGTCGGCGATCAAACATGA

Protein sequence

MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTMVNSIFFLRLVGDQT

Homology

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: KAG7022863.1 (Protein RRP6-like 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 595.5 bits (1534), Expect = 2.6e-166
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTMVNSIFFLRLVGD 300
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTMVNSIFFLRLVGD
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTMVNSIFFLRLVGD 300

Query: 301 QT 303
           QT
Sbjct: 301 QT 302

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: KAG6589163.1 (Protein RRP6-like 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 559.3 bits (1440), Expect = 2.0e-155
Identity = 284/287 (98.95%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRK KIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 287

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: XP_022930823.1 (protein RRP6-like 3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 559.3 bits (1440), Expect = 2.0e-155
Identity = 284/287 (98.95%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRK KIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 287

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: XP_022930824.1 (protein RRP6-like 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 554.7 bits (1428), Expect = 5.0e-154
Identity = 284/288 (98.61%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRK KIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN-ENSST 288
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN ENSST
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSST 288

[Close]

BLAST of Carg19066 vs. NCBI nr
Match: XP_022988684.1 (protein RRP6-like 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 553.1 bits (1424), Expect = 1.5e-153
Identity = 281/287 (97.91%), Postives = 281/287 (97.91%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL RKAKIALVVAS AALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQRKAKIALVVASFAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAK CEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKTCEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWR RPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST
Sbjct: 241 MLQREDWRQRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 287

[Close]

BLAST of Carg19066 vs. ExPASy Swiss-Prot
Match: A9LLI8 (Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.5e-108
Identity = 206/305 (67.54%), Postives = 242/305 (79.34%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTA-----RRRRKQRSVRSSCYLRDDQKPQYAFKRVLA 60
           MEL  KAK+ + VASL A+TI F       R+RRKQ S  SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHLKL----DMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTY 120
           DNSYS FKHLKL      + +   N HPYE+EI  LLEN   EF F+  E +   +S +Y
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECS-LEMSDSY 120

Query: 121 VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 180
           VWVET SQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD 
Sbjct: 121 VWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDV 180

Query: 181 MSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           MS+LRPVF++ +ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQV-NENSSTMVN 296
           T CGVATNK+LQREDWR RPLSE+MVRYARTDAHYLL+IA+ L +ELKQ+  E+SS+  +
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSSPDD 300

[Close]

BLAST of Carg19066 vs. ExPASy Swiss-Prot
Match: Q0WVE8 (Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.8e-43
Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 0


Query: 45  KPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISS--- 104
           KPQ  +K +L DN+ + F+H+ L+ + D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPVKPLPL 111

Query: 105 ERNGFTLSGTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKED 164
           E   F L      VE    LE+L   L     FAVD E +  R+F G T L+QIST  ED
Sbjct: 112 EETPFKL------VEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTED 171

Query: 165 YLVDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVL 224
           Y+VD   L D +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL
Sbjct: 172 YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVL 231

Query: 225 SKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSEL- 284
              + SL +LL+ YCGVA NK  Q+ DWR+RPL + M RYAR D HYLL+I + +  EL 
Sbjct: 232 KLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELH 291

Query: 285 ---KQVNENSSTMV 290
              K+  ++ S +V
Sbjct: 292 TMAKEDEQSDSPLV 298

[Close]

BLAST of Carg19066 vs. ExPASy Swiss-Prot
Match: A9LLI7 (Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.8e-43
Identity = 102/246 (41.46%), Postives = 146/246 (59.35%), Query Frame = 0


Query: 44  QKPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISSER 103
           +KPQ  +  +L +N+   F+H+ L+ + D+    HP E   +L  ++   +E + +    
Sbjct: 196 KKPQEEY-NILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVKP-- 255

Query: 104 NGFTLSGT-YVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDY 163
               L  T + +V+    L+ELV  L     FAVD E +  RSF G T L+QIST  EDY
Sbjct: 256 --LPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDY 315

Query: 164 LVDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLS 223
           +VDT  L   +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL+
Sbjct: 316 IVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN 375

Query: 224 KPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQ 283
             + SL +LL+ +CGV  NK  Q  DWR+RPL E+M RYAR D HYLL+I + +  EL++
Sbjct: 376 LERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQR 435

Query: 284 VNENSS 287
           + ++ +
Sbjct: 436 MAKDDA 436

[Close]

BLAST of Carg19066 vs. ExPASy Swiss-Prot
Match: Q10146 (Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp6 PE=3 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-42
Identity = 99/234 (42.31%), Postives = 137/234 (58.55%), Query Frame = 0


Query: 65  LKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN----GFTLSGTYVWVETASQL 124
           +KLD +  N +  HPYE EI      +S    ++S   N    G       +WV T SQL
Sbjct: 174 VKLDPSLKNSL-PHPYEPEI-----QNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQL 233

Query: 125 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 184
            +++  L      AVD E H  RSF GF  L+QIS  ++D++VDT+ L + +  L  VF 
Sbjct: 234 SDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFT 293

Query: 185 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 244
           N +I KVFHGA  DI+WLQRDF +YVVNLFDT  A +VL      LA+LL+ YC    +K
Sbjct: 294 NPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADK 353

Query: 245 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSEL-KQVNENSSTMVNSIF 294
             Q  DWR+RPL  +M++YA++D HYLL+I + L +EL  +  E    ++ S+F
Sbjct: 354 RYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQSVF 401

[Close]

BLAST of Carg19066 vs. ExPASy Swiss-Prot
Match: Q12149 (Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP6 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-41
Identity = 104/266 (39.10%), Postives = 149/266 (56.02%), Query Frame = 0


Query: 44  QKPQYAFKRVLADNSY-----------SAFKHLKLDMN-TDNDVNS-----HPYESEILS 103
           +KPQ  FK  + ++             +A K L   +   D+D N+     HPYE EI  
Sbjct: 130 EKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDH 189

Query: 104 LLENSSSEFDFISSERNGFTLSGTY-VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSF 163
             +  S E   I  E    +   +  +WV+T+++LE +++ L      AVD E H  RS+
Sbjct: 190 --QEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSY 249

Query: 164 LGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFANSHICKVFHGADNDILWLQRDFHIY 223
            G   L+QIST + DYLVDT+ L +++ +L  VF N  I KVFHGA  DI+WLQRD  +Y
Sbjct: 250 YGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLY 309

Query: 224 VVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAH 283
           VV LFDT  A + +  P+ SLAYLLE +    T+K  Q  DWR+RPLS+ M  YAR D H
Sbjct: 310 VVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTH 369

Query: 284 YLLHIANCLLSELKQVNENSSTMVNS 292
           +LL+I + L ++L + N+ +  +  S
Sbjct: 370 FLLNIYDQLRNKLIESNKLAGVLYES 393

[Close]

BLAST of Carg19066 vs. ExPASy TrEMBL
Match: A0A6J1EWH5 (protein RRP6-like 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 9.8e-156
Identity = 284/287 (98.95%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRK KIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 287

[Close]

BLAST of Carg19066 vs. ExPASy TrEMBL
Match: A0A6J1ESK7 (protein RRP6-like 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 2.4e-154
Identity = 284/288 (98.61%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRK KIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN-ENSST 288
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN ENSST
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSST 288

[Close]

BLAST of Carg19066 vs. ExPASy TrEMBL
Match: A0A6J1JM94 (protein RRP6-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 7.0e-154
Identity = 281/287 (97.91%), Postives = 281/287 (97.91%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL RKAKIALVVAS AALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQRKAKIALVVASFAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAK CEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKTCEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWR RPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST
Sbjct: 241 MLQREDWRQRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 287

[Close]

BLAST of Carg19066 vs. ExPASy TrEMBL
Match: A0A6J1JK94 (protein RRP6-like 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 1.7e-152
Identity = 281/288 (97.57%), Postives = 281/288 (97.57%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL RKAKIALVVAS AALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQRKAKIALVVASFAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERN FTLS TYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAK CEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKTCEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN-ENSST 288
           MLQREDWR RPLSEDMVRYARTDAHYLLHIANCLLSELKQVN ENSST
Sbjct: 241 MLQREDWRQRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSST 288

[Close]

BLAST of Carg19066 vs. ExPASy TrEMBL
Match: A0A0A0K254 (HRDC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G043600 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 6.4e-139
Identity = 258/287 (89.90%), Postives = 266/287 (92.68%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL  K KIALVVAS AALTI FTARRRRK+RSV +SCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQHKLKIALVVASFAALTILFTARRRRKRRSVSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTYVWVETASQL 120
           AFKHLKL+MN DNDVNSHPYESEILSLLENSS EF+FI SER   TLS TY WVET SQL
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPEFNFI-SERTDLTLSDTYAWVETVSQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTAL+QIST KEDYLVDTIALHDSM+LLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NS ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSST 288
           MLQREDWR RPL  DMV+YARTDAHYLL+IANCLL ELKQVNENSST
Sbjct: 241 MLQREDWRQRPLPADMVQYARTDAHYLLYIANCLLVELKQVNENSST 286

[Close]

BLAST of Carg19066 vs. TAIR 10
Match: AT2G32415.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 394.8 bits (1013), Expect = 6.2e-110
Identity = 205/304 (67.43%), Postives = 241/304 (79.28%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTA-----RRRRKQRSVRSSCYLRDDQKPQYAFKRVLA 60
           MEL  KAK+ + VASL A+TI F       R+RRKQ S  SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHLKL----DMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTY 120
           DNSYS FKHLKL      + +   N HPYE+EI  LLEN   EF F+  E +   +S +Y
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECS-LEMSDSY 120

Query: 121 VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 180
           VWVET SQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD 
Sbjct: 121 VWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDV 180

Query: 181 MSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           MS+LRPVF++ +ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTMVNS 296
           T CGVATNK+LQREDWR RPLSE+MVRYARTDAHYLL+IA+ L +ELKQ+  +SS+  + 
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDR 300

[Close]

BLAST of Carg19066 vs. TAIR 10
Match: AT2G32415.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 394.8 bits (1013), Expect = 6.2e-110
Identity = 205/304 (67.43%), Postives = 241/304 (79.28%), Query Frame = 0


Query: 1   MELHRKAKIALVVASLAALTIYFTA-----RRRRKQRSVRSSCYLRDDQKPQYAFKRVLA 60
           MEL  KAK+ + VASL A+TI F       R+RRKQ S  SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHLKL----DMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNGFTLSGTY 120
           DNSYS FKHLKL      + +   N HPYE+EI  LLEN   EF F+  E +   +S +Y
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECS-LEMSDSY 120

Query: 121 VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 180
           VWVET SQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD 
Sbjct: 121 VWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDV 180

Query: 181 MSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           MS+LRPVF++ +ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNENSSTMVNS 296
           T CGVATNK+LQREDWR RPLSE+MVRYARTDAHYLL+IA+ L +ELKQ+  +SS+  + 
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDR 300

[Close]

BLAST of Carg19066 vs. TAIR 10
Match: AT1G54440.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-44
Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 0


Query: 45  KPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISS--- 104
           KPQ  +K +L DN+ + F+H+ L+ + D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPVKPLPL 111

Query: 105 ERNGFTLSGTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKED 164
           E   F L      VE    LE+L   L     FAVD E +  R+F G T L+QIST  ED
Sbjct: 112 EETPFKL------VEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTED 171

Query: 165 YLVDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVL 224
           Y+VD   L D +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL
Sbjct: 172 YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVL 231

Query: 225 SKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSEL- 284
              + SL +LL+ YCGVA NK  Q+ DWR+RPL + M RYAR D HYLL+I + +  EL 
Sbjct: 232 KLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELH 291

Query: 285 ---KQVNENSSTMV 290
              K+  ++ S +V
Sbjct: 292 TMAKEDEQSDSPLV 298

[Close]

BLAST of Carg19066 vs. TAIR 10
Match: AT1G54440.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-44
Identity = 108/254 (42.52%), Postives = 145/254 (57.09%), Query Frame = 0


Query: 45  KPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISS--- 104
           KPQ  +K +L DN+ + F+H+ L+ + D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPVKPLPL 111

Query: 105 ERNGFTLSGTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKED 164
           E   F L      VE    LE+L   L     FAVD E +  R+F G T L+QIST  ED
Sbjct: 112 EETPFKL------VEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTED 171

Query: 165 YLVDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVL 224
           Y+VD   L D +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL
Sbjct: 172 YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVL 231

Query: 225 SKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSEL- 284
              + SL +LL+ YCGVA NK  Q+ DWR+RPL + M RYAR D HYLL+I + +  EL 
Sbjct: 232 KLERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELH 291

Query: 285 ---KQVNENSSTMV 290
              K+  ++ S +V
Sbjct: 292 TMAKEDEQSDSPLV 298

[Close]

BLAST of Carg19066 vs. TAIR 10
Match: AT5G35910.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-44
Identity = 102/246 (41.46%), Postives = 146/246 (59.35%), Query Frame = 0


Query: 44  QKPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISSER 103
           +KPQ  +  +L +N+   F+H+ L+ + D+    HP E   +L  ++   +E + +    
Sbjct: 196 KKPQEEY-NILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVKP-- 255

Query: 104 NGFTLSGT-YVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDY 163
               L  T + +V+    L+ELV  L     FAVD E +  RSF G T L+QIST  EDY
Sbjct: 256 --LPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDY 315

Query: 164 LVDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLS 223
           +VDT  L   +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL+
Sbjct: 316 IVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN 375

Query: 224 KPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQ 283
             + SL +LL+ +CGV  NK  Q  DWR+RPL E+M RYAR D HYLL+I + +  EL++
Sbjct: 376 LERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQR 435

Query: 284 VNENSS 287
           + ++ +
Sbjct: 436 MAKDDA 436

The following BLAST results are available for this feature:

BLAST of Carg19066 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022863.1	2.6e-166	100.00	Protein RRP6-like 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6589163.1	2.0e-155	98.95	Protein RRP6-like 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022930823.1	2.0e-155	98.95	protein RRP6-like 3 isoform X1 [Cucurbita moschata]	[more]
XP_022930824.1	5.0e-154	98.61	protein RRP6-like 3 isoform X2 [Cucurbita moschata]	[more]
XP_022988684.1	1.5e-153	97.91	protein RRP6-like 3 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg19066 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LLI8	2.5e-108	67.54	Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1	[more]
Q0WVE8	2.8e-43	42.52	Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1	[more]
A9LLI7	4.8e-43	41.46	Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1	[more]
Q10146	1.4e-42	42.31	Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
Q12149	1.2e-41	39.10	Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]

BLAST of Carg19066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWH5	9.8e-156	98.95	protein RRP6-like 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=...	[more]
A0A6J1ESK7	2.4e-154	98.61	protein RRP6-like 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=...	[more]
A0A6J1JM94	7.0e-154	97.91	protein RRP6-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 ...	[more]
A0A6J1JK94	1.7e-152	97.57	protein RRP6-like 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 ...	[more]
A0A0A0K254	6.4e-139	89.90	HRDC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G043600 PE=4 S...	[more]

BLAST of Carg19066 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32415.1	6.2e-110	67.43	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT2G32415.2	6.2e-110	67.43	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G54440.1	2.0e-44	42.52	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G54440.2	2.0e-44	42.52	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT5G35910.1	3.4e-44	41.46	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002562	3'-5' exonuclease domain	SMART	SM00474	35exoneu6	coord: 111..279 e-value: 1.6E-42 score: 157.3
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 111..278 e-value: 4.3E-47 score: 160.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 22..294 e-value: 5.3E-80 score: 270.9
None	No IPR available	PANTHER	PTHR12124:SF68	PROTEIN RRP6-LIKE 3	coord: 2..286
IPR045092	Exosome complex exonuclease Rrp6-like	PANTHER	PTHR12124	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	coord: 2..286
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 45..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19066-RA	Carg19066-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071040	nuclear polyadenylation-dependent antisense transcript catabolic process
biological_process	GO:0071039	nuclear polyadenylation-dependent CUT catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071036	nuclear polyadenylation-dependent snoRNA catabolic process
biological_process	GO:0071037	nuclear polyadenylation-dependent snRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0071044	histone mRNA catabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0000175	3'-5'-exoribonuclease activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding