Carg18984 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18984
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	copper transport protein ATX1-like
Location	Carg_Chr18: 9614201 .. 9615948 (-)
RNA-Seq Expression	Carg18984
Synteny	Carg18984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAGATTGGCGAGGGCGAATTTCCCGAGTGTCTGTAATCTTTAACCATGTCTCAGGTACCGCTACGAATTTCTCGGAAATTTGTTCTTGAATGTAATTGTTGGAGATTCGCTTCACGTTTTTCGGCCTCGTTTTTTTTTTTTTCTTTTTCTCTTTCTGTCTCCCGTATGTTTTGGAGATCGAAGATACGTTGGTTTGTTCTTTTTAAACTATAAATCTGCTGTTTGGAGCATGAATCGTTGATTAAAATTGGCGTAGAAGGACTTGTGGATTTGTTTTGAAACATATTCAATCTATGGCGTATCAGATCTTTATATGCTATAAGAAATTATGTAAGCTACAGAGATGCAAGAGCTACTCACGCGATTGTTGATATCTTGTATAGTTCCTACTTATTTTGCGATTCAGACCTGCACATAGTTCAATTCTTTTAGCATTTTGTCCTTTTTCCTTGCTTCTTCTTCCTAAGGTCTTATGCCGTGGTTTTTCATTTGATGTGAATCTGACACCAGTGGTGGAAACGTCAGTAACCGAGCCAAATGAGGTCGAAGTCTAAGAGAGCTCCATAGAAGTATTTCTTTAGTATCGCTAATTGATCAACTTATTGGTTAATAATTGGTCAATCGATCACAAAGGAAGCTTTATCTTGATCGTATATTAGATTCTGGTCACAAAGGAATTTTTTCCCGCTCTTCCAAATTAGAATGTTCTGCTCTTTTTTGTGTTTTGAATTATTAATCTATGTTATTTTGGGAGCCAGAGTTGTTGAAAAATCACTGAGAATATTTATTGATATCACTGATAAAATTGGATTAGTAAGTTTCTGCGAAGAATTTGATAAAGGACCGTTGATATTAAGCACTCTTGAACAAGTTAAATTCTTGTGTGAGATGAACTAACTCTTATTTCTTGGTATCAGGCAGTCTGTATTGCACCTTCCTCTTCTAGCTGAGTTCTATGATTCTATCTTTAATAAATACAGTTTGGAATTTGTTTCTGTGCAGACTACTGTCCTCAAGGTTGCTATGTCATGTCAAGGCTGTGTTGGAGCCGTCAGACGTGTCTTGGGAAAACTGGAAGGTTTGTCATTCCTTGGCTAAATTTTGGTTGTCTCATGATGTGCTCTTCTTTGATGTGTAATCTTTGTATCGGTTCGTGGGGTCGAGTTTTGGTTTAGACATATATCTTGGACAAAGAGGTCAGAAGTTTGAACTTCACAAAGTTCTAGACTAATACACGAACTCTTGAAAGTGTAAACCATATGCATGCTTGGTTAATTTCATTGCAAGCTTAGTTCTCTTTTATGTTTTAAGATTTTTAGAATGAATTCTTGAGTGATGGTTAATAAATCAATCATTATTGCAAAATCGAGTATCCTTCAATCTAAACCCTTAGATTCTTGCTATTCCCAACTGAATATGAACGTTTTGAACTTTACTTAAGTGCTTGGCTACCATGTTCAGGAGTCGAGACATTTGACATCGACATTGATGCGCAAAAGGTGACTGTGAAAGGCAACGTGGAGCGCGATGTAGTTTTCCAAACTGTTTCCAAAACCGGGAAGAAGACTGCCTACTGGGAAGACGAAGCCACCAAAAAGAACAAGAAGCGACGAAAACCAAGCAACTGGCGGCCAACAAAGCCGCAACAGACAGCCCAATCGCCCCCCCCCAACAAGGCGAAGGCAAGGACCCCGCACAGCAAGCTGCACCAAACCGCAGTCCGGAAGCCACCACAAAAAAAATGA

mRNA sequence

GCAGAGATTGGCGAGGGCGAATTTCCCGAGTGTCTGTAATCTTTAACCATGTCTCAGACTACTGTCCTCAAGGTTGCTATGTCATGTCAAGGCTGTGTTGGAGCCGTCAGACGTGTCTTGGGAAAACTGGAAGGAGTCGAGACATTTGACATCGACATTGATGCGCAAAAGGTGACTGTGAAAGGCAACGTGGAGCGCGATGTAGTTTTCCAAACTGTTTCCAAAACCGGGAAGAAGACTGCCTACTGGGAAGACGAAGCCACCAAAAAGAACAAGAAGCGACGAAAACCAAGCAACTGGCGGCCAACAAAGCCGCAACAGACAGCCCAATCGCCCCCCCCCAACAAGGCGAAGGCAAGGACCCCGCACAGCAAGCTGCACCAAACCGCAGTCCGGAAGCCACCACAAAAAAAATGA

Coding sequence (CDS)

ATGTCTCAGACTACTGTCCTCAAGGTTGCTATGTCATGTCAAGGCTGTGTTGGAGCCGTCAGACGTGTCTTGGGAAAACTGGAAGGAGTCGAGACATTTGACATCGACATTGATGCGCAAAAGGTGACTGTGAAAGGCAACGTGGAGCGCGATGTAGTTTTCCAAACTGTTTCCAAAACCGGGAAGAAGACTGCCTACTGGGAAGACGAAGCCACCAAAAAGAACAAGAAGCGACGAAAACCAAGCAACTGGCGGCCAACAAAGCCGCAACAGACAGCCCAATCGCCCCCCCCCAACAAGGCGAAGGCAAGGACCCCGCACAGCAAGCTGCACCAAACCGCAGTCCGGAAGCCACCACAAAAAAAATGA

Protein sequence

MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKLHQTAVRKPPQKK

Homology

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: KAG7012944.1 (Copper transport protein CCH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.6 bits (597), Expect = 4.6e-58
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
           MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61  GKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKLHQTAVRKPPQ 120
           GKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKLHQTAVRKPPQ
Sbjct: 61  GKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKLHQTAVRKPPQ 120

Query: 121 KK 123
           KK
Sbjct: 121 KK 122

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: XP_022945074.1 (copper transport protein ATX1-like [Cucurbita moschata])

HSP 1 Score: 138.3 bits (347), Expect = 4.5e-29
Identity = 82/120 (68.33%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
           MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61  GKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKLHQTAVRKPPQ 120
           GKKTAYWEDEA          +   P      A SP P  A A  P S+    A   P +
Sbjct: 61  GKKTAYWEDEAPATAPAPAAAAAAAPAPAAAPAASPAPEAAPAAAPASEAAPAAAAAPAE 120

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: XP_008446769.1 (PREDICTED: copper transport protein ATX1-like [Cucumis melo] >KAA0034661.1 copper transport protein ATX1-like [Cucumis melo var. makuwa] >TYK09212.1 copper transport protein ATX1-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-28
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAV+RVLGKLEGV+TFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVDTFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEAT 73
          GKKTAYWED+A+
Sbjct: 61 GKKTAYWEDDAS 72

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: KAG6573880.1 (Copper transport protein ATX1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-28
Identity = 79/109 (72.48%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
           MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61  GKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSK 110
           GKKTAYWEDEA          +   P      A +P P  A A  P S+
Sbjct: 61  GKKTAYWEDEAPTAAPAPAAAAAAAPAPAAAPAAAPAPEAAPATAPASE 109

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: KAG6601214.1 (Copper transport protein ATX1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-28
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAV+RVLGKLEGVETFDIDIDAQKVTVKGNV RDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVSRDVVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKTAYWED+A
Sbjct: 61 GKKTAYWEDDA 71

[Close]

BLAST of Carg18984 vs. ExPASy Swiss-Prot
Match: Q94BT9 (Copper transport protein ATX1 OS=Arabidopsis thaliana OX=3702 GN=ATX1 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-24
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQT VL+VAM+C+GCVGAV+RVLGK+EGVE+FD+DI  QKVTVKGNV+ D V QTV+KT
Sbjct: 1  MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKT 60

Query: 61 GKKTAYWEDE 71
          GKKTA+WE E
Sbjct: 61 GKKTAFWEAE 70

[Close]

BLAST of Carg18984 vs. ExPASy Swiss-Prot
Match: O82089 (Copper transport protein CCH OS=Arabidopsis thaliana OX=3702 GN=CCH PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.9e-23
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
           M+QT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNVE + VFQTVSKT
Sbjct: 1   MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query: 61  GKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKLHQTAVRKPPQ 120
           GKKT+YW  EA  + K    P     T+ +  A++    K  A+         A  KP Q
Sbjct: 61  GKKTSYWPVEAEAEPKAEADPKVETVTETKTEAETKTEAKVDAKADVEPKAAEAETKPSQ 120

[Close]

BLAST of Carg18984 vs. ExPASy Swiss-Prot
Match: B3H6D0 (Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX=3702 GN=HIPP45 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-10
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 7  LKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAY 66
          L V M C+GC   VRR + KL+GV+T +ID+D QKVTV G V+R+ V + V +TG+   Y
Sbjct: 20 LLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTAEY 79

Query: 67 W 68
          W
Sbjct: 80 W 80

[Close]

BLAST of Carg18984 vs. ExPASy Swiss-Prot
Match: Q84J88 (Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX=3702 GN=HIPP36 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-09
Identity = 26/64 (40.62%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 4  TTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKK 63
          T VL+V++ C+GC   ++++L K++GV T +ID+  QKVTV GNVE +++ + + K G+ 
Sbjct: 31 TWVLRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRH 90

Query: 64 TAYW 68
             W
Sbjct: 91 AELW 94

[Close]

BLAST of Carg18984 vs. ExPASy Swiss-Prot
Match: F4IQG4 (Heavy metal-associated isoprenylated plant protein 30 OS=Arabidopsis thaliana OX=3702 GN=HIPP30 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 3   QTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGK 62
           QT  LKV M C GC   V+  + KL GV++ +++++ ++VTV G VER  V + V + GK
Sbjct: 46  QTIDLKVRMCCSGCERVVKHAIYKLRGVDSVEVNLEMERVTVVGYVERKKVLKAVRRAGK 105

Query: 63  KTAYW 68
           +  +W
Sbjct: 106 RAEFW 110

[Close]

BLAST of Carg18984 vs. ExPASy TrEMBL
Match: A0A6J1FZY8 (copper transport protein ATX1-like OS=Cucurbita moschata OX=3662 GN=LOC111449423 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.2e-29
Identity = 82/120 (68.33%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
           MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61  GKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKLHQTAVRKPPQ 120
           GKKTAYWEDEA          +   P      A SP P  A A  P S+    A   P +
Sbjct: 61  GKKTAYWEDEAPATAPAPAAAAAAAPAPAAAPAASPAPEAAPAAAPASEAAPAAAAAPAE 120

[Close]

BLAST of Carg18984 vs. ExPASy TrEMBL
Match: A0A5A7SZ31 (Copper transport protein ATX1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002050 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.9e-29
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAV+RVLGKLEGV+TFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVDTFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEAT 73
          GKKTAYWED+A+
Sbjct: 61 GKKTAYWEDDAS 72

[Close]

BLAST of Carg18984 vs. ExPASy TrEMBL
Match: A0A1S3BFW4 (copper transport protein ATX1-like OS=Cucumis melo OX=3656 GN=LOC103489398 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.9e-29
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAV+RVLGKLEGV+TFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVDTFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEAT 73
          GKKTAYWED+A+
Sbjct: 61 GKKTAYWEDDAS 72

[Close]

BLAST of Carg18984 vs. ExPASy TrEMBL
Match: A0A6J1JL25 (copper transport protein ATX1-like OS=Cucurbita maxima OX=3661 GN=LOC111485531 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.3e-29
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAV+RVLGKLEGVETFDIDIDAQKVTVKGNV RDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVSRDVVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKTAYWED+A
Sbjct: 61 GKKTAYWEDDA 71

[Close]

BLAST of Carg18984 vs. ExPASy TrEMBL
Match: A0A6J1GZL9 (copper transport protein ATX1-like OS=Cucurbita moschata OX=3662 GN=LOC111458306 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.3e-29
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAV+RVLGKLEGVETFDIDIDAQKVTVKGNV RDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETFDIDIDAQKVTVKGNVSRDVVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKTAYWED+A
Sbjct: 61 GKKTAYWEDDA 71

[Close]

BLAST of Carg18984 vs. TAIR 10
Match: AT1G66240.1 (homolog of anti-oxidant 1 )

HSP 1 Score: 111.3 bits (277), Expect = 5.5e-25
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
           MSQT VL+VAM+C+GCVGAV+RVLGK+EGVE+FD+DI  QKVTVKGNV+ D V QTV+KT
Sbjct: 31  MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKT 90

Query: 61  GKKTAYWEDE 71
           GKKTA+WE E
Sbjct: 91  GKKTAFWEAE 100

[Close]

BLAST of Carg18984 vs. TAIR 10
Match: AT3G56240.1 (copper chaperone )

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-24
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
           M+QT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNVE + VFQTVSKT
Sbjct: 1   MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query: 61  GKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKLHQTAVRKPPQ 120
           GKKT+YW  EA  + K    P     T+ +  A++    K  A+         A  KP Q
Sbjct: 61  GKKTSYWPVEAEAEPKAEADPKVETVTETKTEAETKTEAKVDAKADVEPKAAEAETKPSQ 120

[Close]

BLAST of Carg18984 vs. TAIR 10
Match: AT1G66240.2 (homolog of anti-oxidant 1 )

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-21
Identity = 45/60 (75.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 11 MSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDE 70
          M+C+GCVGAV+RVLGK+EGVE+FD+DI  QKVTVKGNV+ D V QTV+KTGKKTA+WE E
Sbjct: 1  MTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKTGKKTAFWEAE 60

[Close]

BLAST of Carg18984 vs. TAIR 10
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 7  LKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAY 66
          L V M C+GC   VRR + KL+GV+T +ID+D QKVTV G V+R+ V + V +TG+   Y
Sbjct: 20 LLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTAEY 79

Query: 67 W 68
          W
Sbjct: 80 W 80

[Close]

BLAST of Carg18984 vs. TAIR 10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 6.5e-10
Identity = 26/64 (40.62%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 4  TTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKK 63
          T VL+V++ C+GC   ++++L K++GV T +ID+  QKVTV GNVE +++ + + K G+ 
Sbjct: 31 TWVLRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRH 90

Query: 64 TAYW 68
             W
Sbjct: 91 AELW 94

The following BLAST results are available for this feature:

BLAST of Carg18984 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012944.1	4.6e-58	100.00	Copper transport protein CCH [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022945074.1	4.5e-29	68.33	copper transport protein ATX1-like [Cucurbita moschata]	[more]
XP_008446769.1	1.0e-28	94.44	PREDICTED: copper transport protein ATX1-like [Cucumis melo] >KAA0034661.1 coppe...	[more]
KAG6573880.1	1.7e-28	72.48	Copper transport protein ATX1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6601214.1	1.7e-28	95.77	Copper transport protein ATX1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg18984 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94BT9	7.7e-24	75.71	Copper transport protein ATX1 OS=Arabidopsis thaliana OX=3702 GN=ATX1 PE=1 SV=2	[more]
O82089	2.9e-23	55.83	Copper transport protein CCH OS=Arabidopsis thaliana OX=3702 GN=CCH PE=1 SV=1	[more]
B3H6D0	1.7e-10	50.82	Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX...	[more]
Q84J88	9.2e-09	40.63	Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX...	[more]
F4IQG4	1.3e-07	40.00	Heavy metal-associated isoprenylated plant protein 30 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg18984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZY8	2.2e-29	68.33	copper transport protein ATX1-like OS=Cucurbita moschata OX=3662 GN=LOC111449423...	[more]
A0A5A7SZ31	4.9e-29	94.44	Copper transport protein ATX1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BFW4	4.9e-29	94.44	copper transport protein ATX1-like OS=Cucumis melo OX=3656 GN=LOC103489398 PE=4 ...	[more]
A0A6J1JL25	8.3e-29	95.77	copper transport protein ATX1-like OS=Cucurbita maxima OX=3661 GN=LOC111485531 P...	[more]
A0A6J1GZL9	8.3e-29	95.77	copper transport protein ATX1-like OS=Cucurbita moschata OX=3662 GN=LOC111458306...	[more]

BLAST of Carg18984 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66240.1	5.5e-25	75.71	homolog of anti-oxidant 1	[more]
AT3G56240.1	2.1e-24	55.83	copper chaperone	[more]
AT1G66240.2	6.3e-21	75.00	homolog of anti-oxidant 1	[more]
AT3G56891.1	1.2e-11	50.82	Heavy metal transport/detoxification superfamily protein	[more]
AT5G27690.1	6.5e-10	40.63	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 1..66 e-value: 2.2E-22 score: 81.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..122
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..93
None	No IPR available	PANTHER	PTHR22814:SF310	COPPER TRANSPORT PROTEIN CCH	coord: 1..93
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 7..63 e-value: 6.5E-14 score: 52.1
IPR006121	Heavy metal-associated domain, HMA	PROSITE	PS50846	HMA_2	coord: 3..66 score: 12.955451
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 6..63 e-value: 2.88646E-14 score: 60.6973
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 2..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18984-RA	Carg18984-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding