Carg18934 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18934
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 5708333 .. 5710884 (-)
RNA-Seq ExpressionCarg18934
SyntenyCarg18934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAGCTTGTTCAATGCCAAACTGAGAGGCCCTCCATCGATACGACCATTGTTCTCGGCCACCTGCAACTCACGAAGATTTTCCAACGAGTTTTTGACATTGAGAAGTCGCTGATCATTGACTATTCTGTTGTCTTCAACAAATTGGACAATTCCCTCCAACCACTGAATTATAAGGCCGCAGTTATCAGAAAGAAACTCAAATGCATTTTCGAACCGTTCCATGACCGAGAGGTAACTGGAGAGTTGAGAACAAGAATCAGCCATGAGTGACTTCTGAAGTTCAGAAACAGTGTTGATAACATTAAGAAGTGCAGATGCAAGTCCAACGACATGATCGATCTGGTCTCCAACAGCGAAAGAGTTGCATTTCTGAATCGGAACGAGCTCGGCTTCCAAACTTGCTAGCCTTCGAGCCTTGTCTCTCAATCTTGGTCCAGCATTGGCTAGTGCAGATGCAATGTCTCTTGACTTGTCTAGGCTGGTTTTCAAGTGCTGCCTAGCTGCAACAAGCTTCCTAATGGCTTCCGCCTCATCCATTGACAAAGGAATTACAGGTTCTTCTACTATATGACCCTATATATTGCCTTACAACATTTTTACATATTTGAGTTTAAAATTGCTGTCTGGTTTCTTGTTTGTCACTCCTTTCGCTTTTTCTTCACCAAACTCAACAATCTGGAACTGAAAAGGCTGCCAATTCAAACCAAACCTCACTTGCAAAAAACTAACAGTGTAAAATCTCTCACCCACCGTAGGATACAAGTTCTGTACAACTACCTTTTGTCTGAGCCCGTAAAAGTATAGAAAAACCAGTCTTCAAACTGAAGAATTTCCTACACATTAGATTGGAGACAGAAAAGAAACTGAAGCAGCGACCAACCACCCATGAGAAAGCTTCTAAAAGAGATCAAATTTCAAAGAATGTTTATAATAATTCCTTCATTCAAAAAGCAGTCTGAGTTAAGTTTGGAAGTAATTTCTTCCTGCCCACCTGACTTGCAATATTTGACTTGGTCAACCTAAGAATTTAGCTGGTAGCTGGTATTCATTGGTTGGGTAGGAGAACAAAATATTCTTTATAAGGAGGTGGAAACTTCTTTCTAGCAAACGTGTTTTAAAAACCTTGAGGTGAAGTCCGAAAGGAAAAGCCCAAAAAGAACAATATCTACTAGCTGTTACAAATAGTATCAAAACTAGACACCGGGTGATGTGCCAGTAAGGAGACTGAGCCTCGAAGGGAGTGGACACGAGGCGGTGTGCCAGCAAGGACGCTGGGCCTCGAAAGGGGGTGGATTGGAGGGTCTCACATCGATTGGAGAAGGGAACTAGTGTCAGGGAGGATGTTGGGTCCCAAAGTGGGGTGGATTGTGAGATCCCAAATTGGTTAAGGGTGTGGAAACCTCTAGCAAACGCGTTTTAAAAACCTTGAGGGGAAGTCCGAAAGGGAAAGCCCAAAGAGAACAATCCGAACGATAAAGCTCAAAGAGGACAATATCTGCTAGTGGTGGACTTGGACCGTTACCGTGTATAAATATATAATTGTTCTGCTGCTACTATTTTCATGAGAGAATGATTTAGAATTCAAAAACATTATGACCTCAGCATGCGAGTCAAAAAAAAAACTTTAGAATTAACTTCACTGGAAAAGAGAAGGGTAAAAAACTTGATGTTAAAGTTATTCTATTTCACTGTCTCGTTGGAAGTCAATGGTAATAATAATGAGCCATCCAGAAATCAATGCCGAAGTACAGGGTTCGTGGCTTCTTTTAGTTTATTTATTTTTCTACTTTGCTGGATATCTCTCCTGTGGTTATGATAGCAATTACAGCCAGAGATTTTGGAACCACAGCGTGAGATCCCACATCAGTTGGAGAGATAAATGAATTATTCTATATAAAGGTGTGGAAACCTCTCCCTAGTTTACATGCGTTTTAAAAACTTTGTGGGGGAAAAACTTGAAGAGAAAATCCAAAAAATACAATATCTACTAGCGGTAGACTTGCTTGAGGGGAAACTCAAAAGAGAAAATTCAAAAAAGTACAATATCCATAACCGGGATTATGACTATTACAGTCAATTGATCCCTTATAGTTTCGATTCAATTCCAATTAGTTAAGTCTAGCGATTAAATTAAAACTTTTAGAACGAGTGAAGGCGTAAGATTCAAACTTATGACATATTCATTAAAAAACGTGTTTTAACTAGATGAACTATGTTTAGATGGATCGGAATGAACCCAAAGACAAAGAGAACGACAATAATGATTAGATTAGATTTATTATGTTTGCAGTAATATTATACTGTTCTTTCGATCTTAAAGCTAACAGTATTGGAATCAAAATCTTATATGACAGGGACGTCTTACGGAAAGAACAGAATTTACAGAGGAAGTGTAGTTGATGTTGGTTGAGCCGAAAACAAAACAAGAAGAACAGCCTGTTGGCTCATCAATGGCTACGATTGTTGTTTTCTTTATATGGGGAACAGTGAACAACTAAGCATTCTGGCCTTCCTGAAGGACTCTGCCTCGCCCCACTCGCCACATGCCT

mRNA sequence

TTCAAGCTTGTTCAATGCCAAACTGAGAGGCCCTCCATCGATACGACCATTGTTCTCGGCCACCTGCAACTCACGAAGATTTTCCAACGAGTTTTTGACATTGAGAAGTCGCTGATCATTGACTATTCTGTTGTCTTCAACAAATTGGACAATTCCCTCCAACCACTGAATTATAAGGCCGCAGTTATCAGAAAGAAACTCAAATGCATTTTCGAACCGTTCCATGACCGAGAGGGACGTCTTACGGAAAGAACAGAATTTACAGAGGAAGTGTAGTTGATGTTGGTTGAGCCGAAAACAAAACAAGAAGAACAGCCTGTTGGCTCATCAATGGCTACGATTGTTGTTTTCTTTATATGGGGAACAGTGAACAACTAAGCATTCTGGCCTTCCTGAAGGACTCTGCCTCGCCCCACTCGCCACATGCCT

Coding sequence (CDS)

TTCAAGCTTGTTCAATGCCAAACTGAGAGGCCCTCCATCGATACGACCATTGTTCTCGGCCACCTGCAACTCACGAAGATTTTCCAACGAGTTTTTGACATTGAGAAGTCGCTGATCATTGACTATTCTGTTGTCTTCAACAAATTGGACAATTCCCTCCAACCACTGAATTATAAGGCCGCAGTTATCAGAAAGAAACTCAAATGCATTTTCGAACCGTTCCATGACCGAGAGGGACGTCTTACGGAAAGAACAGAATTTACAGAGGAAGTGTAG

Protein sequence

FKLVQCQTERPSIDTTIVLGHLQLTKIFQRVFDIEKSLIIDYSVVFNKLDNSLQPLNYKAAVIRKKLKCIFEPFHDREGRLTERTEFTEEV
Homology
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BLAST of Carg18934 vs. NCBI nr
Match: KAG7013940.1 (hypothetical protein SDJN02_24109, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.7 bits (465), Expect = 7.0e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  FKLVQCQTERPSIDTTIVLGHLQLTKIFQRVFDIEKSLIIDYSVVFNKLDNSLQPLNYKA 60
          FKLVQCQTERPSIDTTIVLGHLQLTKIFQRVFDIEKSLIIDYSVVFNKLDNSLQPLNYKA
Sbjct: 1  FKLVQCQTERPSIDTTIVLGHLQLTKIFQRVFDIEKSLIIDYSVVFNKLDNSLQPLNYKA 60

Query: 61 AVIRKKLKCIFEPFHDREGRLTERTEFTEEV 92
          AVIRKKLKCIFEPFHDREGRLTERTEFTEEV
Sbjct: 61 AVIRKKLKCIFEPFHDREGRLTERTEFTEEV 91

The following BLAST results are available for this feature:
BLAST of Carg18934 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013940.17.0e-43100.00hypothetical protein SDJN02_24109, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg18934 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18934 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18934 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18934-RACarg18934-RAmRNA