Carg18912 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18912
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SHORT-ROOT-like
Location	Carg_Chr17: 5526389 .. 5528172 (-)
RNA-Seq Expression	Carg18912
Synteny	Carg18912

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAACCTTCTTCAACCAAAGCCATGATCATCATCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCCTCCGAGTACTCGCCCGAACAATCTCCGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTTTGGCCGCCACCGGAAAATGGTCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTAGCTTCCCCTTATGGTGACTCCGATCAGAAAATGGCTTCCTACTTCCTCCAAGCTCTCTTCTGCAAGGCCACTGAAACTGGCCTCACTTGCTATAAAACCCTTGTCGCCATCGCCGACAAGAATCATTCCTTCGACTCTTCCCTCAAGCTCATCCTCAAATTTCAAGAGGTTTGTTCCAAGTCGATTAGGTTAACGTGAATTTAATATCTTGTTCGATTCTTCTTTTCATCGGTGAGTTATGTTATGATCCGGGGTTGAGTGAGAATTTGAACCTTCAAATTTAAAAGAAAAAGGTTGAATTTTTATCTTAAAAATTTTAAGTTAAGCTAATGGGTTAGTGTAAATTTGAATTTTATGTCAGGCAAGTCCATGGACAACATTCGGGCATGTCGCATCGAACGGTGCGATTCTCGAAGCTCTCGAGGGAGAAACCAAGCTCCATATCATCGATATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACGCGCAATGATGACACTCCACATCTCAAGCTCACCGTGGTCACAACAACAACCATTGTTAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGTTAATGGGAGTCCCGTTCGAGTTTAACCCGATAACCAATCTCGAAAACTTAACCGACCTTACAAAAGAAGCACTCAAAGTAGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAATTGAAGAAAGAAACAATGTGGTTTCAATGTTGAAATCATTAAAGCCTCGAGTTTTGACAATTGTAGAGGAAGAAGCTGACTTCATAAGCTCAAAAAACAACTTCTTGAAGTGTTTTGAAGAATGTCTTCGATTCTACACTCTTTACTTTGACATGTTGGAAGAGAGCTTTGTGACAACAAGCAATGAGAGATTGGTATTAGAAAGAGAGTGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGCGATGAAAGTGAAGAACAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAACAATGGAGCAAAAGGCTGAAAGAATCAGCCTTTTCATTAGCTGAATTTAGTGAAGATGTATTGGATGATGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGCTTCTGCGTCGAGCCGCCACCACCGCCACCGGAGAAGTACACGAAAGAGACAACGATTCATGTGGAGTTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAGAGGAATTTGTCTTTTACTATTATAATACCACTCTATATTCATAAAGGAGTTCTTCATTTTGTATGAAAATTGTTATATATATGTCTAGATTTTGTATTCAAATTCTTAATTTCTTGGGGTGCTTTAATGGTTTTGCTTGGTTCTTTTTTGTTTATGGATGGACTTTGCTTAGTTTCATATGAGTAGCAACTTCATACATCGTATGATACCAATATCAAGC

mRNA sequence

ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAACCTTCTTCAACCAAAGCCATGATCATCATCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCCTCCGAGTACTCGCCCGAACAATCTCCGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTTTGGCCGCCACCGGAAAATGGTCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTAGCTTCCCCTTATGGTGACTCCGATCAGAAAATGGCTTCCTACTTCCTCCAAGCTCTCTTCTGCAAGGCCACTGAAACTGGCCTCACTTGCTATAAAACCCTTGTCGCCATCGCCGACAAGAATCATTCCTTCGACTCTTCCCTCAAGCTCATCCTCAAATTTCAAGAGGCAAGTCCATGGACAACATTCGGGCATGTCGCATCGAACGGTGCGATTCTCGAAGCTCTCGAGGGAGAAACCAAGCTCCATATCATCGATATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACGCGCAATGATGACACTCCACATCTCAAGCTCACCGTGGTCACAACAACAACCATTGTTAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGTTAATGGGAGTCCCGTTCGAGTTTAACCCGATAACCAATCTCGAAAACTTAACCGACCTTACAAAAGAAGCACTCAAAGTAGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAATTGAAGAAAGAAACAATGTGGTTTCAATGTTGAAATCATTAAAGCCTCGAGTTTTGACAATTGTAGAGGAAGAAGCTGACTTCATAAGCTCAAAAAACAACTTCTTGAAGTGTTTTGAAGAATGTCTTCGATTCTACACTCTTTACTTTGACATGTTGGAAGAGAGCTTTGTGACAACAAGCAATGAGAGATTGGTATTAGAAAGAGAGTGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGCGATGAAAGTGAAGAACAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAACAATGGAGCAAAAGGCTGAAAGAATCAGCCTTTTCATTAGCTGAATTTAGTGAAGATGTATTGGATGATGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGCTTCTGCGTCGAGCCGCCACCACCGCCACCGGAGAAGTACACGAAAGAGACAACGATTCATGTGGAGTTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAGAGGAATTTGTCTTTTACTATTATAATACCACTCTATATTCATAAAGGAGTTCTTCATTTTGTATGAAAATTGTTATATATATGTCTAGATTTTGTATTCAAATTCTTAATTTCTTGGGGTGCTTTAATGGTTTTGCTTGGTTCTTTTTTGTTTATGGATGGACTTTGCTTAGTTTCATATGAGTAGCAACTTCATACATCGTATGATACCAATATCAAGC

Coding sequence (CDS)

ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAACCTTCTTCAACCAAAGCCATGATCATCATCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCCTCCGAGTACTCGCCCGAACAATCTCCGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTTTGGCCGCCACCGGAAAATGGTCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTAGCTTCCCCTTATGGTGACTCCGATCAGAAAATGGCTTCCTACTTCCTCCAAGCTCTCTTCTGCAAGGCCACTGAAACTGGCCTCACTTGCTATAAAACCCTTGTCGCCATCGCCGACAAGAATCATTCCTTCGACTCTTCCCTCAAGCTCATCCTCAAATTTCAAGAGGCAAGTCCATGGACAACATTCGGGCATGTCGCATCGAACGGTGCGATTCTCGAAGCTCTCGAGGGAGAAACCAAGCTCCATATCATCGATATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACGCGCAATGATGACACTCCACATCTCAAGCTCACCGTGGTCACAACAACAACCATTGTTAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGTTAATGGGAGTCCCGTTCGAGTTTAACCCGATAACCAATCTCGAAAACTTAACCGACCTTACAAAAGAAGCACTCAAAGTAGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAATTGAAGAAAGAAACAATGTGGTTTCAATGTTGAAATCATTAAAGCCTCGAGTTTTGACAATTGTAGAGGAAGAAGCTGACTTCATAAGCTCAAAAAACAACTTCTTGAAGTGTTTTGAAGAATGTCTTCGATTCTACACTCTTTACTTTGACATGTTGGAAGAGAGCTTTGTGACAACAAGCAATGAGAGATTGGTATTAGAAAGAGAGTGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGCGATGAAAGTGAAGAACAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAACAATGGAGCAAAAGGCTGAAAGAATCAGCCTTTTCATTAGCTGAATTTAGTGAAGATGTATTGGATGATGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGCTTCTGCGTCGAGCCGCCACCACCGCCACCGGAGAAGTACACGAAAGAGACAACGATTCATGTGGAGTTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAG

Protein sequence

MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP

Homology

[Close]

BLAST of Carg18912 vs. NCBI nr
Match: KAG7013919.1 (Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 895.2 bits (2312), Expect = 2.4e-256
Identity = 456/456 (100.00%), Postives = 456/456 (100.00%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAA 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAA
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAA 60

Query: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
           ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180
           KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300
           GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR
Sbjct: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300

Query: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360
           VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420
           LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR
Sbjct: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 AATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
           AATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 AATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 456

[Close]

BLAST of Carg18912 vs. NCBI nr
Match: XP_022933337.1 (protein SHORT-ROOT-like [Cucurbita moschata] >XP_022953296.1 protein SHORT-ROOT-like [Cucurbita moschata])

HSP 1 Score: 880.6 bits (2274), Expect = 6.0e-252
Identity = 449/456 (98.46%), Postives = 452/456 (99.12%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAA 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS    AAAAAA
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS----AAAAAA 60

Query: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
           ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180
           KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300
           GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR
Sbjct: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300

Query: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360
           VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420
           LLGCDESEEQMGSE+REKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR
Sbjct: 361 LLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 AATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
           AATTATG+VHERD+DSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 AATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 452

[Close]

BLAST of Carg18912 vs. NCBI nr
Match: XP_022992254.1 (protein SHORT-ROOT-like [Cucurbita maxima])

HSP 1 Score: 878.2 bits (2268), Expect = 3.0e-251
Identity = 450/458 (98.25%), Postives = 453/458 (98.91%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAA 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS   AAAAAAA
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS---AAAAAAA 60

Query: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
           ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180
           KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300
           GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNV+SMLKSLKPR
Sbjct: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPR 300

Query: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360
           VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLE+SFVTTSNERLVLERECSRSIVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420
           LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR
Sbjct: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 AAT--TATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
           AAT  TATGEVHERD+DSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 AATTATATGEVHERDDDSCGVYLTWKEEPVVWVSAWKP 455

[Close]

BLAST of Carg18912 vs. NCBI nr
Match: XP_023548769.1 (protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 869.0 bits (2244), Expect = 1.8e-248
Identity = 445/462 (96.32%), Postives = 450/462 (97.40%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAA 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS   AAAAAAA
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS---AAAAAAA 60

Query: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
            TLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  TTLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180
           KATETGLTCYKTLVAIADKNHSFD+SLKLILKFQEASPWTTFGHVASNGAILEALEGETK
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDTSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300
           GVPF+FNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNV+SMLKSLKPR
Sbjct: 241 GVPFDFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPR 300

Query: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360
           VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLE+SFVTTSNERLVLERECSRSIVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420
           LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR
Sbjct: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 AATT------ATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
           A  T      ATGEVHERD+DSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 ATITTTTTAAATGEVHERDDDSCGVYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of Carg18912 vs. NCBI nr
Match: KAG6575379.1 (Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 828.2 bits (2138), Expect = 3.5e-236
Identity = 424/424 (100.00%), Postives = 424/424 (100.00%), Query Frame = 0


Query: 33  MQSSTSHSSEYSPEQSPSAAAAAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHF 92
           MQSSTSHSSEYSPEQSPSAAAAAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHF
Sbjct: 1   MQSSTSHSSEYSPEQSPSAAAAAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHF 60

Query: 93  LWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILK 152
           LWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILK
Sbjct: 61  LWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILK 120

Query: 153 FQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLK 212
           FQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLK
Sbjct: 121 FQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLK 180

Query: 213 LTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIA 272
           LTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIA
Sbjct: 181 LTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIA 240

Query: 273 INCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLY 332
           INCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLY
Sbjct: 241 INCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLY 300

Query: 333 FDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFS 392
           FDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFS
Sbjct: 301 FDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFS 360

Query: 393 LAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVS 452
           LAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVS
Sbjct: 361 LAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVS 420

Query: 453 AWKP 457
           AWKP
Sbjct: 421 AWKP 424

[Close]

BLAST of Carg18912 vs. ExPASy Swiss-Prot
Match: Q9SZF7 (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 5.3e-110
Identity = 220/481 (45.74%), Postives = 312/481 (64.86%), Query Frame = 0


Query: 17  NQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAAAT-------------- 76
           + S  H+HH H +     S  +  ++Y P  S + ++ AAAAA A+              
Sbjct: 66  SSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGHHNDPSAF 125

Query: 77  ----------LAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAS 136
                      +A  KW+ ++L E ARA S+KD+ +    LW LNEL+SPYGD++QK+AS
Sbjct: 126 SIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLAS 185

Query: 137 YFLQALFCKATETGLTCYKTLV--AIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGA 196
           YFLQALF + T +G  CY+T+V  A  +K  SF+S+ K +LKFQE SPW TFGHVA+NGA
Sbjct: 186 YFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGA 245

Query: 197 ILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT-------TIVK 256
           ILEA++GE K+HI+DIS+T CTQWPTLLE+LATR+DDTPHL+LT V          T   
Sbjct: 246 ILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASH 305

Query: 257 SLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRV- 316
            +MKEIG RMEKFARLMGVPF+FN I ++ +L++     L V+ DE +AINC+GA+  + 
Sbjct: 306 RMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIA 365

Query: 317 -RIEERNNVVSMLKSLKPRVLTIVEEEADFISSK-----NNFLKCFEECLRFYTLYFDML 376
            R   R+ V+S  + L+PR++T+VEEEAD +  +     + FL+ F ECLR++ + F+  
Sbjct: 366 SRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESW 425

Query: 377 EESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEF 436
           EESF  TSNERL+LER   R+IV L+ C+ S+    +ERRE  ++WS+R++ S F    +
Sbjct: 426 EESFPRTSNERLMLERAAGRAIVDLVACEPSD---STERRETARKWSRRMRNSGFGAVGY 485

Query: 437 SEDVLDDVKALLKRYKPG-WALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWK 457
           S++V DDV+ALL+RYK G W++++               D+ G++L W+++PVVW SAW+
Sbjct: 486 SDEVADDVRALLRRYKEGVWSMVQCP-------------DAAGIFLCWRDQPVVWASAWR 530

[Close]

BLAST of Carg18912 vs. ExPASy Swiss-Prot
Match: A2XIA8 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.4e-105
Identity = 220/445 (49.44%), Postives = 291/445 (65.39%), Query Frame = 0


Query: 49  PSAAAAAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQ 108
           PS++ A A A AA  +++G+W++ LL ECARA++ +DS ++   +WMLNELASPYGD DQ
Sbjct: 168 PSSSGAGAGAGAAP-SSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQ 227

Query: 109 KMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASN 168
           K+ASYFLQ LF + T +G    +TL   +D+N SFDS+ +  LKFQE SPWT FGHVA+N
Sbjct: 228 KLASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAAN 287

Query: 169 GAILEA-LEG------------------ETKLHIIDISNTLCTQWPTLLESLATR-NDDT 228
           GAILE+ LE                    T+LHI+D+SNT CTQWPTLLE+LATR +DDT
Sbjct: 288 GAILESFLEAAAAGAAAASSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDT 347

Query: 229 PHLKLTVVTTT----TIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALK 288
           PHL +T V  T       + +M+EIGQR+EKFARLMGVPF F  + +  +L DL   AL 
Sbjct: 348 PHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALD 407

Query: 289 VEE---DEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNN---- 348
           + E     A+A+NC+ ALR V    R+  V+ L+ L+PRV+T+VEEEAD  + + +    
Sbjct: 408 LREGGATAALAVNCVNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSE 467

Query: 349 ------FLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQM 408
                 F+K F E LRF++ Y D LEESF  TSNERL LER   R+IV L+ C  S+   
Sbjct: 468 ADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQ--- 527

Query: 409 GSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGEVHE 457
            +ERRE    W++R++ + FS A FSEDV DDV++LL+RYK GW++  R A  AT +   
Sbjct: 528 SAERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSM--RDAGGATDDA-- 587

[Close]

BLAST of Carg18912 vs. ExPASy Swiss-Prot
Match: Q75I13 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.8e-105
Identity = 220/445 (49.44%), Postives = 291/445 (65.39%), Query Frame = 0


Query: 49  PSAAAAAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQ 108
           PS++ A A A AA  +++G+W++ LL ECARA++ +DS ++   +WMLNELASPYGD DQ
Sbjct: 168 PSSSGAGAGAGAAP-SSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQ 227

Query: 109 KMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASN 168
           K+ASYFLQ LF + T +G    +TL   +D+N SFDS+ +  LKFQE SPWT FGHVA+N
Sbjct: 228 KLASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAAN 287

Query: 169 GAILEA-LEG------------------ETKLHIIDISNTLCTQWPTLLESLATR-NDDT 228
           GAILE+ LE                    T+LHI+D+SNT CTQWPTLLE+LATR +DDT
Sbjct: 288 GAILESFLEAAAAGAAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDT 347

Query: 229 PHLKLTVVTTT----TIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALK 288
           PHL +T V  T       + +M+EIGQR+EKFARLMGVPF F  + +  +L DL   AL 
Sbjct: 348 PHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALD 407

Query: 289 VEE---DEAIAINCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNN---- 348
           + E     A+A+NC+ ALR V    R+  V+ L+ L+PRV+T+VEEEAD  + + +    
Sbjct: 408 LREGGATAALAVNCVNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSE 467

Query: 349 ------FLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRLLGCDESEEQM 408
                 F+K F E LRF++ Y D LEESF  TSNERL LER   R+IV L+ C  S+   
Sbjct: 468 ADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQ--- 527

Query: 409 GSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGEVHE 457
            +ERRE    W++R++ + FS A FSEDV DDV++LL+RYK GW++  R A  AT +   
Sbjct: 528 SAERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSM--RDAGGATDDA-- 587

[Close]

BLAST of Carg18912 vs. ExPASy Swiss-Prot
Match: A2YN56 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 2.4e-102
Identity = 216/467 (46.25%), Postives = 293/467 (62.74%), Query Frame = 0


Query: 25  HLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAAATLAATGKWSSTLLKECARAISEK 84
           H  F   D+      + ++S   S S    A++ A       G+W+S LL ECAR+++ +
Sbjct: 148 HGLFEAADLSFPPDLNLDFSSPASSSGGGTASSGAVGG-GGGGRWASQLLLECARSVAAR 207

Query: 85  DSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFD 144
           DS ++   +WMLNELASPYGD +QK+ASYFLQ LF + T +G    +TL A +D+N SFD
Sbjct: 208 DSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNTSFD 267

Query: 145 SSLKLILKFQEASPWTTFGHVASNGAILE-------ALEGET-KLHIIDISNTLCTQWPT 204
           S+ +  L+FQE SPW++FGHVA+NGAILE       A   ET + HI+D+SNT CTQWPT
Sbjct: 268 STRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPT 327

Query: 205 LLESLATRN-DDTPHLKLTVVTT------TTIVKSLMKEIGQRMEKFARLMGVPFEFNPI 264
           LLE+LATR+ D+TPHL +T V +      T  V+ +M+EIGQRMEKFARLMGVPF F  +
Sbjct: 328 LLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAV 387

Query: 265 TNLENLTDLTKEALKVEE---DEAIAINCIGALRRV---RIEERNNVVSMLKSLKPRVLT 324
            +  +L +L  +AL + E     A+A+NC+ +LR V   R   R+   + L+ L PRV+T
Sbjct: 388 HHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVT 447

Query: 325 IVEEEADFISSKNN--------------FLKCFEECLRFYTLYFDMLEESFVTTSNERLV 384
           +VEEEAD ++S  +              FLK F E LRF++ Y D LEESF  TSNERL 
Sbjct: 448 VVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLA 507

Query: 385 LERECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLK 444
           LER   R+IV L+ C  SE     ERRE    W++R++ + FS   FSEDV DDV++LL+
Sbjct: 508 LERGAGRAIVDLVSCPASESM---ERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLR 567

Query: 445 RYKPGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
           RY+ GW+ +R A T  +           GV+L WKE+P+VW SAW+P
Sbjct: 568 RYREGWS-MREAGTDDSAA-------GAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of Carg18912 vs. ExPASy Swiss-Prot
Match: Q8H2X8 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 373.6 bits (958), Expect = 3.1e-102
Identity = 216/467 (46.25%), Postives = 293/467 (62.74%), Query Frame = 0


Query: 25  HLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAAATLAATGKWSSTLLKECARAISEK 84
           H  F   D+      + ++S   S S    A++ A       G+W+S LL ECAR+++ +
Sbjct: 148 HGLFEAADLSFPPDLNLDFSSPASSSGGGTASSGAVGG-GGGGRWASQLLLECARSVAAR 207

Query: 85  DSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFD 144
           DS ++   +WMLNELASPYGD +QK+ASYFLQ LF + T +G    +TL A +D+N SFD
Sbjct: 208 DSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNTSFD 267

Query: 145 SSLKLILKFQEASPWTTFGHVASNGAILE-------ALEGET-KLHIIDISNTLCTQWPT 204
           S+ +  L+FQE SPW++FGHVA+NGAILE       A   ET + HI+D+SNT CTQWPT
Sbjct: 268 STRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPT 327

Query: 205 LLESLATRN-DDTPHLKLTVVTT------TTIVKSLMKEIGQRMEKFARLMGVPFEFNPI 264
           LLE+LATR+ D+TPHL +T V +      T  V+ +M+EIGQRMEKFARLMGVPF F  +
Sbjct: 328 LLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAV 387

Query: 265 TNLENLTDLTKEALKVEE---DEAIAINCIGALRRV---RIEERNNVVSMLKSLKPRVLT 324
            +  +L +L  +AL + E     A+A+NC+ +LR V   R   R+   + L+ L PRV+T
Sbjct: 388 HHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVT 447

Query: 325 IVEEEADFISSKNN--------------FLKCFEECLRFYTLYFDMLEESFVTTSNERLV 384
           +VEEEAD ++S  +              FLK F E LRF++ Y D LEESF  TSNERL 
Sbjct: 448 VVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLA 507

Query: 385 LERECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLK 444
           LER   R+IV L+ C  SE     ERRE    W++R++ + FS   FSEDV DDV++LL+
Sbjct: 508 LERGAGRAIVDLVSCPASESM---ERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLR 567

Query: 445 RYKPGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
           RY+ GW+ +R A T  +           GV+L WKE+P+VW SAW+P
Sbjct: 568 RYREGWS-MREAGTDDSAA-------GAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of Carg18912 vs. ExPASy TrEMBL
Match: A0A6J1EZH2 (protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111440607 PE=3 SV=1)

HSP 1 Score: 880.6 bits (2274), Expect = 2.9e-252
Identity = 449/456 (98.46%), Postives = 452/456 (99.12%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAA 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS    AAAAAA
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS----AAAAAA 60

Query: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
           ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180
           KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300
           GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR
Sbjct: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300

Query: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360
           VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420
           LLGCDESEEQMGSE+REKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR
Sbjct: 361 LLGCDESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 AATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
           AATTATG+VHERD+DSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 AATTATGKVHERDDDSCGVYLTWKEEPVVWVSAWKP 452

[Close]

BLAST of Carg18912 vs. ExPASy TrEMBL
Match: A0A6J1JX21 (protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111488628 PE=3 SV=1)

HSP 1 Score: 878.2 bits (2268), Expect = 1.4e-251
Identity = 450/458 (98.25%), Postives = 453/458 (98.91%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAA 60
           MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS   AAAAAAA
Sbjct: 1   MDITFFTAKEAPTTFFNQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPS---AAAAAAA 60

Query: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
           ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180
           KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPR 300
           GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNV+SMLKSLKPR
Sbjct: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPR 300

Query: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVR 360
           VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLE+SFVTTSNERLVLERECSRSIVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420
           LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR
Sbjct: 361 LLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRR 420

Query: 421 AAT--TATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
           AAT  TATGEVHERD+DSCGVYLTWKEEPVVWVSAWKP
Sbjct: 421 AATTATATGEVHERDDDSCGVYLTWKEEPVVWVSAWKP 455

[Close]

BLAST of Carg18912 vs. ExPASy TrEMBL
Match: A0A0A0K966 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 SV=1)

HSP 1 Score: 785.4 bits (2027), Expect = 1.3e-223
Identity = 400/464 (86.21%), Postives = 425/464 (91.59%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHDHH-----HHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAA 60
           MDITFFTAKEAPT+FFNQSHDH      HHLHFSNLDMQSSTSHSSEYSPE SPS     
Sbjct: 1   MDITFFTAKEAPTSFFNQSHDHRHHHQLHHLHFSNLDMQSSTSHSSEYSPEHSPS----- 60

Query: 61  AAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFL 120
           AAAAAAT  ATGKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMA YFL
Sbjct: 61  AAAAAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAFYFL 120

Query: 121 QALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEAL 180
           QALFC+ATETGLTCYKTLVA+A+KNH+FDS+L+LILKFQEASPWTTFGHVASNGAILEAL
Sbjct: 121 QALFCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEAL 180

Query: 181 EGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEK 240
           EGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT+IVK LMKEIGQRMEK
Sbjct: 181 EGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEK 240

Query: 241 FARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLK 300
           FARLMGVPFEFNPITN+++LTDLT EALKVEE EAIAINCIGALRRV++EERNNV+SMLK
Sbjct: 241 FARLMGVPFEFNPITNIDHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLK 300

Query: 301 SLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECS 360
           SLKPRVLTIVEEEADFISSKN+FLKCFEECLRFYTLYF+MLEESFV TSNERLVLERECS
Sbjct: 301 SLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECS 360

Query: 361 RSIVRLLGCDE---SEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYK 420
           RSIVRLLGCD    SEE++GSERREKGKQW+KRLK++ FS A FSEDV+DDVKALLKRYK
Sbjct: 361 RSIVRLLGCDHDQISEEEIGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYK 420

Query: 421 PGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
           PGWALLR A      E    D +S G+YLTWKEEPVVWVSAWKP
Sbjct: 421 PGWALLRPATAAVRDEEENGDGESSGIYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of Carg18912 vs. ExPASy TrEMBL
Match: A0A1S3CCT8 (protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1)

HSP 1 Score: 777.3 bits (2006), Expect = 3.5e-221
Identity = 401/467 (85.87%), Postives = 425/467 (91.01%), Query Frame = 0


Query: 1   MDITFFTAKEAPTTFFNQSHD------HHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAA 60
           MDITFFT KEAPT+FFNQSHD      HHHHLHFSNLDMQSSTSHSSEYSPE SPS    
Sbjct: 1   MDITFFTPKEAPTSFFNQSHDHRHHHHHHHHLHFSNLDMQSSTSHSSEYSPEHSPS---- 60

Query: 61  AAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYF 120
            AAAAAAT  ATGKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYF
Sbjct: 61  -AAAAAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYF 120

Query: 121 LQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEA 180
           LQALFC+ATETGLTCYKTLVA+A+KNH+FDS+L+LILKFQEASPWTTFGHVASNGAILEA
Sbjct: 121 LQALFCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEA 180

Query: 181 LEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRME 240
           LEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT+IVK LMKEIGQRME
Sbjct: 181 LEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRME 240

Query: 241 KFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSML 300
           KFARLMGVPFEFNPITN+ +LTDLT EALKVEE EAIAINCIGALRRV++EERNNV+SML
Sbjct: 241 KFARLMGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISML 300

Query: 301 KSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLEREC 360
           K LKPRVLTIVEEEADFISS N+FLKCFEECLRFYTLYF+MLEESF  TSNERLVLEREC
Sbjct: 301 KLLKPRVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLEESFGATSNERLVLEREC 360

Query: 361 SRSIVRLLGCDE---SEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRY 420
           SRSIVRLLGCD    SEE+MGSERREKGKQW+KRLK++ FS A FSEDV+DDVKALLKRY
Sbjct: 361 SRSIVRLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRY 420

Query: 421 KPGWALLRRAATTATGEVHERDNDS--CGVYLTWKEEPVVWVSAWKP 457
           KPGWALL R AT A G   E + D+   G+YLTWKEEPVVWVSAWKP
Sbjct: 421 KPGWALL-RPATAAVGVDEEENGDAEPSGIYLTWKEEPVVWVSAWKP 461

[Close]

BLAST of Carg18912 vs. ExPASy TrEMBL
Match: A0A5A7T902 (Protein SHORT-ROOT-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001130 PE=3 SV=1)

HSP 1 Score: 720.3 bits (1858), Expect = 5.0e-204
Identity = 371/429 (86.48%), Postives = 394/429 (91.84%), Query Frame = 0


Query: 33  MQSSTSHSSEYSPEQSPSAAAAAAAAAAATLAATGKWSSTLLKECARAISEKDSNKIHHF 92
           MQSSTSHSSEYSPE SPS     AAAAAAT  ATGKW+STLLKECARAISEKDSNKIHHF
Sbjct: 1   MQSSTSHSSEYSPEHSPS-----AAAAAATATATGKWASTLLKECARAISEKDSNKIHHF 60

Query: 93  LWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKTLVAIADKNHSFDSSLKLILK 152
           LWMLNELASPYGDSDQKMASYFLQALFC+ATETGLTCYKTLVA+A+KNH+FDS+L+LILK
Sbjct: 61  LWMLNELASPYGDSDQKMASYFLQALFCRATETGLTCYKTLVAVAEKNHNFDSALRLILK 120

Query: 153 FQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLK 212
           FQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLK
Sbjct: 121 FQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLK 180

Query: 213 LTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIA 272
           LTVVTTT+IVK LMKEIGQRMEKFARLMGVPFEFNPITN+ +LTDLT EALKVEE EAIA
Sbjct: 181 LTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNINHLTDLTNEALKVEEGEAIA 240

Query: 273 INCIGALRRVRIEERNNVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLY 332
           INCIGALRRV++EERNNV+SMLK LKPRVLTIVEEEADFISS N+FLKCFEECLRFYTLY
Sbjct: 241 INCIGALRRVKVEERNNVISMLKLLKPRVLTIVEEEADFISSTNDFLKCFEECLRFYTLY 300

Query: 333 FDMLEESFVTTSNERLVLERECSRSIVRLLGCDE---SEEQMGSERREKGKQWSKRLKES 392
           F+MLEESF  TSNERLVLERECSRSIVRLLGCD    SEE+MGSERREKGKQW+KRLK++
Sbjct: 301 FEMLEESFGATSNERLVLERECSRSIVRLLGCDHDQISEEEMGSERREKGKQWTKRLKQA 360

Query: 393 AFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATTATGEVHERDNDS--CGVYLTWKEEP 452
            FS A FSEDV+DDVKALLKRYKPGWALL R AT A G   E + D+   G+YLTWKEEP
Sbjct: 361 LFSSANFSEDVMDDVKALLKRYKPGWALL-RPATAAVGVDEEENGDAEPSGIYLTWKEEP 420

Query: 453 VVWVSAWKP 457
           VVWVSAWKP
Sbjct: 421 VVWVSAWKP 423

[Close]

BLAST of Carg18912 vs. TAIR 10
Match: AT4G37650.1 (GRAS family transcription factor )

HSP 1 Score: 399.4 bits (1025), Expect = 3.8e-111
Identity = 220/481 (45.74%), Postives = 312/481 (64.86%), Query Frame = 0


Query: 17  NQSHDHHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAAAAAAT-------------- 76
           + S  H+HH H +     S  +  ++Y P  S + ++ AAAAA A+              
Sbjct: 66  SSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGHHNDPSAF 125

Query: 77  ----------LAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAS 136
                      +A  KW+ ++L E ARA S+KD+ +    LW LNEL+SPYGD++QK+AS
Sbjct: 126 SIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLAS 185

Query: 137 YFLQALFCKATETGLTCYKTLV--AIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGA 196
           YFLQALF + T +G  CY+T+V  A  +K  SF+S+ K +LKFQE SPW TFGHVA+NGA
Sbjct: 186 YFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGA 245

Query: 197 ILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTT-------TIVK 256
           ILEA++GE K+HI+DIS+T CTQWPTLLE+LATR+DDTPHL+LT V          T   
Sbjct: 246 ILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASH 305

Query: 257 SLMKEIGQRMEKFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRV- 316
            +MKEIG RMEKFARLMGVPF+FN I ++ +L++     L V+ DE +AINC+GA+  + 
Sbjct: 306 RMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIA 365

Query: 317 -RIEERNNVVSMLKSLKPRVLTIVEEEADFISSK-----NNFLKCFEECLRFYTLYFDML 376
            R   R+ V+S  + L+PR++T+VEEEAD +  +     + FL+ F ECLR++ + F+  
Sbjct: 366 SRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESW 425

Query: 377 EESFVTTSNERLVLERECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEF 436
           EESF  TSNERL+LER   R+IV L+ C+ S+    +ERRE  ++WS+R++ S F    +
Sbjct: 426 EESFPRTSNERLMLERAAGRAIVDLVACEPSD---STERRETARKWSRRMRNSGFGAVGY 485

Query: 437 SEDVLDDVKALLKRYKPG-WALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWK 457
           S++V DDV+ALL+RYK G W++++               D+ G++L W+++PVVW SAW+
Sbjct: 486 SDEVADDVRALLRRYKEGVWSMVQCP-------------DAAGIFLCWRDQPVVWASAWR 530

[Close]

BLAST of Carg18912 vs. TAIR 10
Match: AT3G49950.1 (GRAS family transcription factor )

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-46
Identity = 127/404 (31.44%), Postives = 208/404 (51.49%), Query Frame = 0


Query: 73  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKT 132
           LL  CA AI   D+   H  LW+LN +A P GDS Q++ S FL+AL  +A     T   T
Sbjct: 30  LLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQRLTSAFLRALLSRAVSKTPTLSST 89

Query: 133 LVAI--ADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTL 192
           +  +  AD+ H F  S+  +  F + +PW  FG +A+N AIL A+EG + +HI+D+S T 
Sbjct: 90  ISFLPQADELHRF--SVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTH 149

Query: 193 CTQWPTLLESLATR-NDDTPHLKLTVVTTT----TIVKSLMKEIGQRMEKFARLMGVPFE 252
           C Q PTL++++A+R N   P LKLTVV+++      +    +E+G ++  FA    +  E
Sbjct: 150 CMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNITME 209

Query: 253 FN--PITNLENLTDLTKEALKV---EEDEAIAINCIGALRRVRIEE--------RNNVVS 312
           F   P T  +  + L ++ L++     +EA+ +NC   LR +  E         R   + 
Sbjct: 210 FTIVPSTYSDGFSSLLQQ-LRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLK 269

Query: 313 MLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLER 372
            L+SL PR++T++EE+ D  S   N +   +    ++ + FD  +      S +R   E 
Sbjct: 270 QLRSLNPRIVTLIEEDVDLTS--ENLVNRLKSAFNYFWIPFDTTD---TFMSEQRRWYEA 329

Query: 373 ECSRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYK 432
           E S  I  ++  + +E     ER E  ++W +R++E+ F      ED + DVKA+L+ + 
Sbjct: 330 EISWKIENVVAKEGAER---VERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEEHA 389

Query: 433 PGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWKP 457
            GW +             ++++D   + LTWK   VV+ + W P
Sbjct: 390 VGWGM-------------KKEDDDESLVLTWKGHSVVFATVWVP 409

[Close]

BLAST of Carg18912 vs. TAIR 10
Match: AT2G04890.1 (SCARECROW-like 21 )

HSP 1 Score: 162.9 bits (411), Expect = 5.9e-40
Identity = 110/390 (28.21%), Postives = 198/390 (50.77%), Query Frame = 0


Query: 73  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCKATETGLTCYKT 132
           +L  CA+A+SE +       +  L  + S  G+  Q++ +Y L+ L  +   +G + YK+
Sbjct: 53  VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKS 112

Query: 133 LVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCT 192
           L +   +++ F   L  +    E  P+  FG++++NGAI EA++ E ++HIID      +
Sbjct: 113 LQSREPESYEF---LSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGS 172

Query: 193 QWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNL 252
           QW  L+++ A R    P++++T V   +++ ++ K    R+EK A+   VPF FN ++  
Sbjct: 173 QWIALIQAFAARPGGAPNIRITGVGDGSVLVTVKK----RLEKLAKKFDVPFRFNAVSRP 232

Query: 253 ENLTDLTKEALKVEEDEAIAINCIGALRRVRIE------ERNNVVSMLKSLKPRVLTIVE 312
               ++  E L V + EA+ +N    L  +  E       R+ ++ M+KSL P+V+T+VE
Sbjct: 233 S--CEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVE 292

Query: 313 EEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLEREC-SRSIVRLLGCD 372
           +E +  ++ + FL  F E L +YT  F+ ++        ER+ +E+ C +R +V ++ C+
Sbjct: 293 QECN--TNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACE 352

Query: 373 ESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLRRAATTA 432
            +E     ER E   +W  R   + F     S  +   ++ALL+ Y  G+A         
Sbjct: 353 GAER---IERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYA--------- 412

Query: 433 TGEVHERDNDSCGVYLTWKEEPVVWVSAWK 456
              + ERD     +YL W +  +V   AWK
Sbjct: 413 ---IEERDG---ALYLGWMDRILVSSCAWK 413

[Close]

BLAST of Carg18912 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 156.4 bits (394), Expect = 5.6e-38
Identity = 113/408 (27.70%), Postives = 199/408 (48.77%), Query Frame = 0


Query: 69  WSSTL-----------LKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQA 128
           W STL           L  CA+A+SE D    H  +  L ++ S  G+  Q++ +Y L+ 
Sbjct: 107 WRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEG 166

Query: 129 LFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEG 188
           L  +   +G + YK L    +   +   S   IL   E  P+  FG++++NGAI EA++ 
Sbjct: 167 LVAQLASSGSSIYKALNRCPEPASTELLSYMHIL--YEVCPYFKFGYMSANGAIAEAMKE 226

Query: 189 ETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSL---MKEIGQRME 248
           E ++HIID      +QW TL+++ A R    P +++T +   T   +    +  +G R+ 
Sbjct: 227 ENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLA 286

Query: 249 KFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIE------ERN 308
           K A+   VPFEFN ++   +++++  + L V   EA+A+N    L  +  E       R+
Sbjct: 287 KLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRD 346

Query: 309 NVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERL 368
            ++ M+KSL P+V+T+VE+E++  ++   F   F E + +Y   F+ ++ +      +R+
Sbjct: 347 RLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRI 406

Query: 369 VLEREC-SRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKAL 428
            +E+ C +R +V ++ C+ ++     ER E   +W  R   + F+    S  V   +K+L
Sbjct: 407 NVEQHCLARDVVNIIACEGADR---VERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSL 466

Query: 429 LKRYKPGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWK 456
           L+ Y   + L             ERD     +YL W    +V   AWK
Sbjct: 467 LRNYSDKYRL------------EERDG---ALYLGWMHRDLVASCAWK 490

[Close]

BLAST of Carg18912 vs. TAIR 10
Match: AT5G48150.2 (GRAS family transcription factor )

HSP 1 Score: 156.4 bits (394), Expect = 5.6e-38
Identity = 113/408 (27.70%), Postives = 199/408 (48.77%), Query Frame = 0


Query: 69  WSSTL-----------LKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQA 128
           W STL           L  CA+A+SE D    H  +  L ++ S  G+  Q++ +Y L+ 
Sbjct: 107 WRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEG 166

Query: 129 LFCKATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEG 188
           L  +   +G + YK L    +   +   S   IL   E  P+  FG++++NGAI EA++ 
Sbjct: 167 LVAQLASSGSSIYKALNRCPEPASTELLSYMHIL--YEVCPYFKFGYMSANGAIAEAMKE 226

Query: 189 ETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSL---MKEIGQRME 248
           E ++HIID      +QW TL+++ A R    P +++T +   T   +    +  +G R+ 
Sbjct: 227 ENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLA 286

Query: 249 KFARLMGVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIE------ERN 308
           K A+   VPFEFN ++   +++++  + L V   EA+A+N    L  +  E       R+
Sbjct: 287 KLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRD 346

Query: 309 NVVSMLKSLKPRVLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERL 368
            ++ M+KSL P+V+T+VE+E++  ++   F   F E + +Y   F+ ++ +      +R+
Sbjct: 347 RLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRI 406

Query: 369 VLEREC-SRSIVRLLGCDESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKAL 428
            +E+ C +R +V ++ C+ ++     ER E   +W  R   + F+    S  V   +K+L
Sbjct: 407 NVEQHCLARDVVNIIACEGADR---VERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSL 466

Query: 429 LKRYKPGWALLRRAATTATGEVHERDNDSCGVYLTWKEEPVVWVSAWK 456
           L+ Y   + L             ERD     +YL W    +V   AWK
Sbjct: 467 LRNYSDKYRL------------EERDG---ALYLGWMHRDLVASCAWK 490

The following BLAST results are available for this feature:

BLAST of Carg18912 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013919.1	2.4e-256	100.00	Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022933337.1	6.0e-252	98.46	protein SHORT-ROOT-like [Cucurbita moschata] >XP_022953296.1 protein SHORT-ROOT-...	[more]
XP_022992254.1	3.0e-251	98.25	protein SHORT-ROOT-like [Cucurbita maxima]	[more]
XP_023548769.1	1.8e-248	96.32	protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo]	[more]
KAG6575379.1	3.5e-236	100.00	Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg18912 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZF7	5.3e-110	45.74	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
A2XIA8	1.4e-105	49.44	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]
Q75I13	1.8e-105	49.44	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]
A2YN56	2.4e-102	46.25	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
Q8H2X8	3.1e-102	46.25	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]

BLAST of Carg18912 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZH2	2.9e-252	98.46	protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111440607 PE=3 SV=1	[more]
A0A6J1JX21	1.4e-251	98.25	protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111488628 PE=3 SV=1	[more]
A0A0A0K966	1.3e-223	86.21	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 S...	[more]
A0A1S3CCT8	3.5e-221	85.87	protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1	[more]
A0A5A7T902	5.0e-204	86.48	Protein SHORT-ROOT-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Carg18912 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37650.1	3.8e-111	45.74	GRAS family transcription factor	[more]
AT3G49950.1	1.1e-46	31.44	GRAS family transcription factor	[more]
AT2G04890.1	5.9e-40	28.21	SCARECROW-like 21	[more]
AT5G48150.1	5.6e-38	27.70	GRAS family transcription factor	[more]
AT5G48150.2	5.6e-38	27.70	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 72..455 e-value: 7.3E-95 score: 318.1
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 34..455
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 61..455 score: 68.054047
None	No IPR available	PANTHER	PTHR31636:SF194	PROTEIN SHORT-ROOT-LIKE	coord: 34..455

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18912-RA	Carg18912-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding