Carg18894 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18894
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor bHLH147-like
Location	Carg_Chr08: 7741711 .. 7742936 (+)
RNA-Seq Expression	Carg18894
Synteny	Carg18894

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAATGCAAAGAGTAAGTAAAGAAAGGCGGAAGGAGTCCCAAGGCTTTGGGTGTATGGCTAGGGCTGAATAAAATAGGAGTGAGATCCGAATCAATAAATATGAATTCTGGTTGCTTCACAACTTTATCTCCCTTCTCCCTCTCTCTCTCTACCCACTTGCAGAAGAGGACACCTTAAGAGCGGGTTCCATTTATGTCTTTTCGCTCTCCTAACCCTCTGTTTCATCTTCTTCACAGTTCTTATGTTTTGGTTGATCCAGGTTTCGTCTTCGAAGGAATTTCCCCAAAAGGTACGAATCTTATCAACTCCTTCTCTTGCCTTCTTCCTCCTATTATCATTACAATTTTTAATCTTCCTTTCTCCGGTTCCCAAGAATTTTCAATTTCTATTCTTCATTTGGGAGTTTCCGTTTCTGTTAGTCTAAATCTGTCATTTCCTTTTGATCCTTCCTTCCTCAGGATATCTTCTTTGCTTGCTCTTGTTCCGTTAGGTGAAACATAAATTTGGAGAAGAGAGATTGGATCATTGGTCCATCTTTGAATCGTCGATTTGTTGAGGGTAACCAATTTTTGTTTTTGTTTTTTTTTTTTTTGAGATCGGATCGGTGCGTCTTGATGGCGTCATCTGTTCTTTCGAACTCCGATCGCATGCGGGAGTCTTCAAGGAAGCAAAAGAAGAAGAAAAACCACGGCAACAGAGACCGTCATCAAAACCAGAACCATATTAACTGGAAATCTCAAGCTCAGAAAGAAATTTACTCGTCTAAGCTGGTTCGAGCGTTGAATCAAGTGAGGCTCAGTCCTTCGAATGAGGCGCCCCGCCGTGGTAGAGCCGTACGCGAGGCCGCCGACAGAATCCTTGCCGTCGCCGCCAAGGGGAGAACCAGGTGGAGCCGAGCCATTCTAACGAATAGGTTGAAGCTCAAGTTCAGGAAGCCGAAGAAACAGAGAGCATCCACCGCTGGAAACAACCGCCCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAAAGGAAAAACGTTGCCGGCGGTGCAAAGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCTGGTTGCCGGAAAGAACCTTGGCCGGTTATCCTAGAAGAGGCCACCGATTACATAGCTGCACTTGAAATGCAAGTTCGAGCTATGACTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGTTGCAGGCTCTAGCTCCGCTCCTCCAAGCTGA

mRNA sequence

ATGGCTGAATGCAAAGAGTTTCGTCTTCGAAGGAATTTCCCCAAAAGATCGGATCGGTGCGTCTTGATGGCGTCATCTGTTCTTTCGAACTCCGATCGCATGCGGGAGTCTTCAAGGAAGCAAAAGAAGAAGAAAAACCACGGCAACAGAGACCGTCATCAAAACCAGAACCATATTAACTGGAAATCTCAAGCTCAGAAAGAAATTTACTCGTCTAAGCTGGTTCGAGCGTTGAATCAAGTGAGGCTCAGTCCTTCGAATGAGGCGCCCCGCCGTGGTAGAGCCGTACGCGAGGCCGCCGACAGAATCCTTGCCGTCGCCGCCAAGGGGAGAACCAGGTGGAGCCGAGCCATTCTAACGAATAGGTTGAAGCTCAAGTTCAGGAAGCCGAAGAAACAGAGAGCATCCACCGCTGGAAACAACCGCCCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAAAGGAAAAACGTTGCCGGCGGTGCAAAGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCTGGTTGCCGGAAAGAACCTTGGCCGGTTATCCTAGAAGAGGCCACCGATTACATAGCTGCACTTGAAATGCAAGTTCGAGCTATGACTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGTTGCAGGCTCTAGCTCCGCTCCTCCAAGCTGA

Coding sequence (CDS)

ATGGCTGAATGCAAAGAGTTTCGTCTTCGAAGGAATTTCCCCAAAAGATCGGATCGGTGCGTCTTGATGGCGTCATCTGTTCTTTCGAACTCCGATCGCATGCGGGAGTCTTCAAGGAAGCAAAAGAAGAAGAAAAACCACGGCAACAGAGACCGTCATCAAAACCAGAACCATATTAACTGGAAATCTCAAGCTCAGAAAGAAATTTACTCGTCTAAGCTGGTTCGAGCGTTGAATCAAGTGAGGCTCAGTCCTTCGAATGAGGCGCCCCGCCGTGGTAGAGCCGTACGCGAGGCCGCCGACAGAATCCTTGCCGTCGCCGCCAAGGGGAGAACCAGGTGGAGCCGAGCCATTCTAACGAATAGGTTGAAGCTCAAGTTCAGGAAGCCGAAGAAACAGAGAGCATCCACCGCTGGAAACAACCGCCCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAAAGGAAAAACGTTGCCGGCGGTGCAAAGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCTGGTTGCCGGAAAGAACCTTGGCCGGTTATCCTAGAAGAGGCCACCGATTACATAGCTGCACTTGAAATGCAAGTTCGAGCTATGACTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGTTGCAGGCTCTAGCTCCGCTCCTCCAAGCTGA

Protein sequence

MAECKEFRLRRNFPKRSDRCVLMASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVRLSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAMTALAELLSASTSVAGSSSAPPS

Homology

[Close]

BLAST of Carg18894 vs. NCBI nr
Match: KAG7026360.1 (Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 410.6 bits (1054), Expect = 8.6e-111
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MAECKEFRLRRNFPKRSDRCVLMASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHIN 60
           MAECKEFRLRRNFPKRSDRCVLMASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHIN
Sbjct: 1   MAECKEFRLRRNFPKRSDRCVLMASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHIN 60

Query: 61  WKSQAQKEIYSSKLVRALNQVRLSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILT 120
           WKSQAQKEIYSSKLVRALNQVRLSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILT
Sbjct: 61  WKSQAQKEIYSSKLVRALNQVRLSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILT 120

Query: 121 NRLKLKFRKPKKQRASTAGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPW 180
           NRLKLKFRKPKKQRASTAGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPW
Sbjct: 121 NRLKLKFRKPKKQRASTAGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPW 180

Query: 181 PVILEEATDYIAALEMQVRAMTALAELLSASTSVAGSSSAPPS 224
           PVILEEATDYIAALEMQVRAMTALAELLSASTSVAGSSSAPPS
Sbjct: 181 PVILEEATDYIAALEMQVRAMTALAELLSASTSVAGSSSAPPS 223

[Close]

BLAST of Carg18894 vs. NCBI nr
Match: KAG6594020.1 (Transcription factor basic helix-loop-helix 147, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 365.2 bits (936), Expect = 4.1e-97
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 82
           MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR
Sbjct: 1   MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 60

Query: 83  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR 142
           LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR
Sbjct: 61  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR 120

Query: 143 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAMT 202
           PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAMT
Sbjct: 121 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAMT 180

Query: 203 ALAELLSASTSVAGSSSAPPS 224
           ALAELLSASTSVAGSSSAPPS
Sbjct: 181 ALAELLSASTSVAGSSSAPPS 201

[Close]

BLAST of Carg18894 vs. NCBI nr
Match: XP_023514807.1 (transcription factor bHLH147-like [Cucurbita pepo subsp. pepo] >XP_023514808.1 transcription factor bHLH147-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358.6 bits (919), Expect = 3.9e-95
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 82
           MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR
Sbjct: 1   MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 60

Query: 83  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR 142
           LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR
Sbjct: 61  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR 120

Query: 143 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAMT 202
           PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEP PVILEEATDYIAALEMQVRAM+
Sbjct: 121 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMS 180

Query: 203 ALAELLSASTSVAGSSSAPPS 224
           ALAELLSASTSVAGSSSAPPS
Sbjct: 181 ALAELLSASTSVAGSSSAPPS 201

[Close]

BLAST of Carg18894 vs. NCBI nr
Match: XP_022930482.1 (transcription factor bHLH147-like [Cucurbita moschata])

HSP 1 Score: 356.7 bits (914), Expect = 1.5e-94
Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 82
           MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR
Sbjct: 1   MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 60

Query: 83  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR 142
           LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAG NR
Sbjct: 61  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGINR 120

Query: 143 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAMT 202
           PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEP PVILEEATDYIAALEMQVRAMT
Sbjct: 121 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMT 180

Query: 203 ALAELLSASTSVAGSSSAPPS 224
           ALAELLSASTSVAGSSSAPPS
Sbjct: 181 ALAELLSASTSVAGSSSAPPS 201

[Close]

BLAST of Carg18894 vs. NCBI nr
Match: XP_022999891.1 (transcription factor bHLH147-like [Cucurbita maxima])

HSP 1 Score: 347.8 bits (891), Expect = 6.8e-92
Identity = 194/200 (97.00%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 82
           MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQN INWKSQAQKEIYSSKLVRALNQVR
Sbjct: 1   MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNLINWKSQAQKEIYSSKLVRALNQVR 60

Query: 83  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR 142
           LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQR STAGNNR
Sbjct: 61  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRVSTAGNNR 120

Query: 143 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAMT 202
           PKKPRVSV RLKGKTLPAVQRKVRVLGRLVP CRKEP PVILEEATDYIAALEMQVRAM+
Sbjct: 121 PKKPRVSVFRLKGKTLPAVQRKVRVLGRLVPSCRKEPLPVILEEATDYIAALEMQVRAMS 180

Query: 203 ALAELLSASTSVAGSSSAPP 223
           ALAELLSASTSVAGSSSAPP
Sbjct: 181 ALAELLSASTSVAGSSSAPP 200

[Close]

BLAST of Carg18894 vs. ExPASy Swiss-Prot
Match: Q9LSN7 (Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.7e-42
Identity = 110/206 (53.40%), Postives = 144/206 (69.90%), Query Frame = 0


Query: 21  VLMASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHI--NWKSQAQKEIYSSKLVRAL 80
           +L  ++  SNSDR R   RK+KKK +  + ++  + +     W+S+ Q++IYS+KLV AL
Sbjct: 11  LLQPTTTSSNSDRSR---RKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHAL 70

Query: 81  NQVRL------SPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKK 140
            ++R+      S S+  PR GRAVRE ADR LAVAA+G+T WSRAIL+  +KLKFRK K+
Sbjct: 71  RELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKR 130

Query: 141 QRAS-------TAGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILE 200
           QR S       T G+ R KK R +VLRLK K LPAVQRKV+VL RLVPGCRK+  PV+LE
Sbjct: 131 QRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLE 190

Query: 201 EATDYIAALEMQVRAMTALAELLSAS 212
           E TDYIAA+EMQ+R MTA+   +S+S
Sbjct: 191 ETTDYIAAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Carg18894 vs. ExPASy Swiss-Prot
Match: Q9C8Z9 (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-39
Identity = 111/214 (51.87%), Postives = 139/214 (64.95%), Query Frame = 0


Query: 25  SSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVRL- 84
           +S  S+  R ++ S       +  +      + H  W+S+ Q+ IYS+KL +AL QVRL 
Sbjct: 12  TSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYSAKLFQALQQVRLN 71

Query: 85  -----SPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTA 144
                S S  A +RG+AVREAADR LAV+A+GRT WSRAIL NR+KLKFRK ++ RA+ A
Sbjct: 72  SSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQRRPRATMA 131

Query: 145 ----------GNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEAT 204
                      +NR +K RVSVLRL  K++P V RKVRVLGRLVPGC K+  PVILEEAT
Sbjct: 132 IPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEAT 191

Query: 205 DYIAALEMQVRAMTALAELLSASTSVAGSSSAPP 223
           DYI ALEMQVRAM +L +LLS+        SAPP
Sbjct: 192 DYIQALEMQVRAMNSLVQLLSS------YGSAPP 219

[Close]

BLAST of Carg18894 vs. ExPASy Swiss-Prot
Match: O80482 (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-28
Identity = 91/202 (45.05%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGN----RDRHQNQNHI-NWKSQAQKEIYSSKLVRA 82
           M  S+  + +   ESSR++K + +         R  N+  +  WK+   ++IY+ KLV A
Sbjct: 1   MVESLFPSIENTGESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEA 60

Query: 83  LNQVR----LSPSNEAPR----RGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRK 142
           L +VR     + +NE  +      R +R+ ADR+LA +A+G TRWSRAIL +R++ K +K
Sbjct: 61  LRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKK 120

Query: 143 PKKQRASTAGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATD 202
            +K + ST GN + +K      R+K   LPAV+RK+++LGRLVPGCRK   P +L+EATD
Sbjct: 121 HRKAKKST-GNCKSRKGLTETNRIK---LPAVERKLKILGRLVPGCRKVSVPNLLDEATD 180

Query: 203 YIAALEMQVRAMTALAELLSAS 212
           YIAALEMQVRAM ALAELL+A+
Sbjct: 181 YIAALEMQVRAMEALAELLTAA 198

[Close]

BLAST of Carg18894 vs. ExPASy Swiss-Prot
Match: Q9M9L6 (Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.6e-21
Identity = 66/154 (42.86%), Postives = 90/154 (58.44%), Query Frame = 0


Query: 61  WKSQAQKEIYSSKLVRALNQVRLSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILT 120
           W++   +++YS KL  AL         +  RR   VR+ AD++LA  A+G TRWSRAIL 
Sbjct: 63  WRATTAQKVYSLKLYDAL---------QRSRRSATVRDTADKVLATTARGATRWSRAILV 122

Query: 121 NRLKLKFRKPKKQRASTAGNNRPKKPRVSVLRLKG-----KTLPAVQRKVRVLGRLVPGC 180
           +R     R+ +        N +P     + +R  G     + L AV  +VRVLG LVPGC
Sbjct: 123 SRFGTSLRRRR--------NTKPASALAAAIRGSGGSGRRRKLSAVGNRVRVLGGLVPGC 182

Query: 181 RKEPWPVILEEATDYIAALEMQVRAMTALAELLS 210
           R+   P +L+E  DYIAALEMQVRAMTAL+++LS
Sbjct: 183 RRTALPELLDETADYIAALEMQVRAMTALSKILS 199

[Close]

BLAST of Carg18894 vs. ExPASy TrEMBL
Match: A0A6J1EQM7 (transcription factor bHLH147-like OS=Cucurbita moschata OX=3662 GN=LOC111436924 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 7.1e-95
Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 82
           MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR
Sbjct: 1   MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 60

Query: 83  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR 142
           LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAG NR
Sbjct: 61  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGINR 120

Query: 143 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAMT 202
           PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEP PVILEEATDYIAALEMQVRAMT
Sbjct: 121 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMT 180

Query: 203 ALAELLSASTSVAGSSSAPPS 224
           ALAELLSASTSVAGSSSAPPS
Sbjct: 181 ALAELLSASTSVAGSSSAPPS 201

[Close]

BLAST of Carg18894 vs. ExPASy TrEMBL
Match: A0A6J1KED1 (transcription factor bHLH147-like OS=Cucurbita maxima OX=3661 GN=LOC111494233 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.3e-92
Identity = 194/200 (97.00%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 82
           MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQN INWKSQAQKEIYSSKLVRALNQVR
Sbjct: 1   MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNLINWKSQAQKEIYSSKLVRALNQVR 60

Query: 83  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTAGNNR 142
           LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQR STAGNNR
Sbjct: 61  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRVSTAGNNR 120

Query: 143 PKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAMT 202
           PKKPRVSV RLKGKTLPAVQRKVRVLGRLVP CRKEP PVILEEATDYIAALEMQVRAM+
Sbjct: 121 PKKPRVSVFRLKGKTLPAVQRKVRVLGRLVPSCRKEPLPVILEEATDYIAALEMQVRAMS 180

Query: 203 ALAELLSASTSVAGSSSAPP 223
           ALAELLSASTSVAGSSSAPP
Sbjct: 181 ALAELLSASTSVAGSSSAPP 200

[Close]

BLAST of Carg18894 vs. ExPASy TrEMBL
Match: A0A6J1H465 (transcription factor bHLH147-like OS=Cucurbita moschata OX=3662 GN=LOC111460328 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.7e-86
Identity = 184/202 (91.09%), Postives = 193/202 (95.54%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 82
           MASSV SNSDR RESSR+QKKKK+HGNRD HQNQNHI WKSQAQ+EIYSSKLVRALNQVR
Sbjct: 1   MASSVHSNSDRARESSRRQKKKKSHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVR 60

Query: 83  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQR-ASTAGNN 142
           LSP NEAPRRGRAVREAADR+LAVAAKGRTRWSRAILTNRLKLKFRKPK+QR ASTAGNN
Sbjct: 61  LSPPNEAPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPKRQRSASTAGNN 120

Query: 143 RPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAM 202
           R KKPRVSVLRL+GK+LPAVQRKVRVLGRLVPGCRKEP PVILEEATDYIAALEMQVRAM
Sbjct: 121 RSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAM 180

Query: 203 TALAELLSASTSVAGSSSAPPS 224
           +ALAELLSASTS AGSSSAPP+
Sbjct: 181 SALAELLSASTSAAGSSSAPPN 202

[Close]

BLAST of Carg18894 vs. ExPASy TrEMBL
Match: A0A6J1L1P5 (transcription factor bHLH147-like OS=Cucurbita maxima OX=3661 GN=LOC111499053 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.9e-85
Identity = 182/202 (90.10%), Postives = 191/202 (94.55%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVR 82
           MASSV SNSDR RESSR+QKKKK+HGNRD HQNQNHI WKSQAQ+EIYSSKLVRALNQVR
Sbjct: 1   MASSVHSNSDRARESSRRQKKKKSHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVR 60

Query: 83  LSPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQR-ASTAGNN 142
           LSP NE PRRGRAVREAADR+LAVAAKGRTRWSRAIL NRLKLKFRKPK+QR ASTAGNN
Sbjct: 61  LSPPNEGPRRGRAVREAADRVLAVAAKGRTRWSRAILKNRLKLKFRKPKRQRSASTAGNN 120

Query: 143 RPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQVRAM 202
           R KKPRVSVLRL+GK+LPAVQRKVRVLGRLVPGCRKEP PVILEEATDYIAALEMQVRAM
Sbjct: 121 RSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAM 180

Query: 203 TALAELLSASTSVAGSSSAPPS 224
           +ALAELLSASTS AGSSSAPP+
Sbjct: 181 SALAELLSASTSAAGSSSAPPN 202

[Close]

BLAST of Carg18894 vs. ExPASy TrEMBL
Match: A0A0A0KCL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327940 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.2e-81
Identity = 185/206 (89.81%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 23  MASSVLSNSDRMRE-SSRKQKKKKNHGNRDRHQNQN-HINWKSQAQKEIYSSKLVRALNQ 82
           MASSVLSNSDR RE SSRKQKKKK+HGNRD HQNQN HI WKSQAQ+EIYSSKLVRALNQ
Sbjct: 1   MASSVLSNSDRARESSSRKQKKKKSHGNRDHHQNQNHHIKWKSQAQQEIYSSKLVRALNQ 60

Query: 83  VRLSPSNEA-PRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRK-PKKQRA-ST 142
           VRL PSNEA PRRGRAVREAADR+LAVAAKGRTRWSRAILTNRLKLKFRK PK+QR+ ST
Sbjct: 61  VRLGPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKAPKRQRSTST 120

Query: 143 AGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATDYIAALEMQ 202
           AGNNR KKPRVSVLRL+GK+LPAVQRKVRVLGRLVPGCRKEP PVILEEATDYIAALEMQ
Sbjct: 121 AGNNRSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQ 180

Query: 203 VRAMTALAELLSASTSVAGSSSAPPS 224
           VRAM+ALAELLSASTS AGSSS+PPS
Sbjct: 181 VRAMSALAELLSASTSAAGSSSSPPS 206

[Close]

BLAST of Carg18894 vs. TAIR 10
Match: AT3G17100.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 172.2 bits (435), Expect = 4.8e-43
Identity = 110/206 (53.40%), Postives = 144/206 (69.90%), Query Frame = 0


Query: 21  VLMASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHI--NWKSQAQKEIYSSKLVRAL 80
           +L  ++  SNSDR R   RK+KKK +  + ++  + +     W+S+ Q++IYS+KLV AL
Sbjct: 11  LLQPTTTSSNSDRSR---RKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHAL 70

Query: 81  NQVRL------SPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKK 140
            ++R+      S S+  PR GRAVRE ADR LAVAA+G+T WSRAIL+  +KLKFRK K+
Sbjct: 71  RELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKR 130

Query: 141 QRAS-------TAGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILE 200
           QR S       T G+ R KK R +VLRLK K LPAVQRKV+VL RLVPGCRK+  PV+LE
Sbjct: 131 QRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLE 190

Query: 201 EATDYIAALEMQVRAMTALAELLSAS 212
           E TDYIAA+EMQ+R MTA+   +S+S
Sbjct: 191 ETTDYIAAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Carg18894 vs. TAIR 10
Match: AT3G17100.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 172.2 bits (435), Expect = 4.8e-43
Identity = 110/206 (53.40%), Postives = 144/206 (69.90%), Query Frame = 0


Query: 21  VLMASSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHI--NWKSQAQKEIYSSKLVRAL 80
           +L  ++  SNSDR R   RK+KKK +  + ++  + +     W+S+ Q++IYS+KLV AL
Sbjct: 11  LLQPTTTSSNSDRSR---RKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHAL 70

Query: 81  NQVRL------SPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKK 140
            ++R+      S S+  PR GRAVRE ADR LAVAA+G+T WSRAIL+  +KLKFRK K+
Sbjct: 71  RELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKR 130

Query: 141 QRAS-------TAGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILE 200
           QR S       T G+ R KK R +VLRLK K LPAVQRKV+VL RLVPGCRK+  PV+LE
Sbjct: 131 QRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLE 190

Query: 201 EATDYIAALEMQVRAMTALAELLSAS 212
           E TDYIAA+EMQ+R MTA+   +S+S
Sbjct: 191 ETTDYIAAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Carg18894 vs. TAIR 10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-40
Identity = 111/214 (51.87%), Postives = 139/214 (64.95%), Query Frame = 0


Query: 25  SSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVRL- 84
           +S  S+  R ++ S       +  +      + H  W+S+ Q+ IYS+KL +AL QVRL 
Sbjct: 12  TSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYSAKLFQALQQVRLN 71

Query: 85  -----SPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTA 144
                S S  A +RG+AVREAADR LAV+A+GRT WSRAIL NR+KLKFRK ++ RA+ A
Sbjct: 72  SSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQRRPRATMA 131

Query: 145 ----------GNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEAT 204
                      +NR +K RVSVLRL  K++P V RKVRVLGRLVPGC K+  PVILEEAT
Sbjct: 132 IPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEAT 191

Query: 205 DYIAALEMQVRAMTALAELLSASTSVAGSSSAPP 223
           DYI ALEMQVRAM +L +LLS+        SAPP
Sbjct: 192 DYIQALEMQVRAMNSLVQLLSS------YGSAPP 219

[Close]

BLAST of Carg18894 vs. TAIR 10
Match: AT3G06590.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-40
Identity = 111/214 (51.87%), Postives = 139/214 (64.95%), Query Frame = 0


Query: 25  SSVLSNSDRMRESSRKQKKKKNHGNRDRHQNQNHINWKSQAQKEIYSSKLVRALNQVRL- 84
           +S  S+  R ++ S       +  +      + H  W+S+ Q+ IYS+KL +AL QVRL 
Sbjct: 12  TSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYSAKLFQALQQVRLN 71

Query: 85  -----SPSNEAPRRGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRKPKKQRASTA 144
                S S  A +RG+AVREAADR LAV+A+GRT WSRAIL NR+KLKFRK ++ RA+ A
Sbjct: 72  SSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQRRPRATMA 131

Query: 145 ----------GNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEAT 204
                      +NR +K RVSVLRL  K++P V RKVRVLGRLVPGC K+  PVILEEAT
Sbjct: 132 IPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEAT 191

Query: 205 DYIAALEMQVRAMTALAELLSASTSVAGSSSAPP 223
           DYI ALEMQVRAM +L +LLS+        SAPP
Sbjct: 192 DYIQALEMQVRAMNSLVQLLSS------YGSAPP 219

[Close]

BLAST of Carg18894 vs. TAIR 10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-29
Identity = 91/202 (45.05%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 23  MASSVLSNSDRMRESSRKQKKKKNHGN----RDRHQNQNHI-NWKSQAQKEIYSSKLVRA 82
           M  S+  + +   ESSR++K + +         R  N+  +  WK+   ++IY+ KLV A
Sbjct: 1   MVESLFPSIENTGESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEA 60

Query: 83  LNQVR----LSPSNEAPR----RGRAVREAADRILAVAAKGRTRWSRAILTNRLKLKFRK 142
           L +VR     + +NE  +      R +R+ ADR+LA +A+G TRWSRAIL +R++ K +K
Sbjct: 61  LRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKK 120

Query: 143 PKKQRASTAGNNRPKKPRVSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPWPVILEEATD 202
            +K + ST GN + +K      R+K   LPAV+RK+++LGRLVPGCRK   P +L+EATD
Sbjct: 121 HRKAKKST-GNCKSRKGLTETNRIK---LPAVERKLKILGRLVPGCRKVSVPNLLDEATD 180

Query: 203 YIAALEMQVRAMTALAELLSAS 212
           YIAALEMQVRAM ALAELL+A+
Sbjct: 181 YIAALEMQVRAMEALAELLTAA 198

The following BLAST results are available for this feature:

BLAST of Carg18894 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026360.1	8.6e-111	100.00	Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6594020.1	4.1e-97	100.00	Transcription factor basic helix-loop-helix 147, partial [Cucurbita argyrosperma...	[more]
XP_023514807.1	3.9e-95	99.00	transcription factor bHLH147-like [Cucurbita pepo subsp. pepo] >XP_023514808.1 t...	[more]
XP_022930482.1	1.5e-94	99.00	transcription factor bHLH147-like [Cucurbita moschata]	[more]
XP_022999891.1	6.8e-92	97.00	transcription factor bHLH147-like [Cucurbita maxima]	[more]

BLAST of Carg18894 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSN7	6.7e-42	53.40	Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=...	[more]
Q9C8Z9	1.4e-39	51.87	Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=...	[more]
O80482	1.5e-28	45.05	Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=...	[more]
Q9M9L6	6.6e-21	42.86	Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=...	[more]

BLAST of Carg18894 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQM7	7.1e-95	99.00	transcription factor bHLH147-like OS=Cucurbita moschata OX=3662 GN=LOC111436924 ...	[more]
A0A6J1KED1	3.3e-92	97.00	transcription factor bHLH147-like OS=Cucurbita maxima OX=3661 GN=LOC111494233 PE...	[more]
A0A6J1H465	2.7e-86	91.09	transcription factor bHLH147-like OS=Cucurbita moschata OX=3662 GN=LOC111460328 ...	[more]
A0A6J1L1P5	3.9e-85	90.10	transcription factor bHLH147-like OS=Cucurbita maxima OX=3661 GN=LOC111499053 PE...	[more]
A0A0A0KCL4	1.2e-81	89.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327940 PE=4 SV=1	[more]

BLAST of Carg18894 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17100.1	4.8e-43	53.40	sequence-specific DNA binding transcription factors	[more]
AT3G17100.2	4.8e-43	53.40	sequence-specific DNA binding transcription factors	[more]
AT3G06590.1	1.0e-40	51.87	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G06590.2	1.0e-40	51.87	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G09250.1	1.0e-29	45.05	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..64
None	No IPR available	PANTHER	PTHR33124:SF78	TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1	coord: 36..222
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 36..222
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 150..205 e-value: 5.56243E-16 score: 67.6476
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 164..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18894-RA	Carg18894-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding