Carg18866 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18866
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein Ycf2
Location	Carg_Chr08: 7609519 .. 7610430 (+)
RNA-Seq Expression	Carg18866
Synteny	Carg18866

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTCTTCACCTACGAAAACGAAGTGGCGTCGGTCATTCCTCCAGAGAAGTTCTTCAAGGCATTTATCCTTGGTGCCGACCAATTATATCCCAAGATTGTGCCAAATCAGCCTCAATCCGTTCTCGAAGGAGATGGTGGGCCCGGAACTATCAAGACCATCTCCTTCAGTGTCGGTAATGCTCATAATTTTTTCTATATATTGTTATTTCCATATTCTTGTAATTTATTTGATTATAAATAGAGGATTAAACAACCATTCTTGATGTATTAATCAGGGGATCAAGTGAAAACCATAAAGCACAGGTTGGACGTAATAGATGAAGCATCGCGAACGTACAAGTACACGGTGTTAGAAGGCGAGCTTTTATCGGACGCCATTGACAAAATTTCAAAGGAAATAAAGGTGGTTGAAGGTCCTTCTGGAGGGTCCATTTTGAAGAGCACAAGCGTTTACCACACCAAGGGAGACCACCAAATCGAGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGGATTGTTGATTCATCACCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTTCATCCGAGTGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGTGTTTAAATAA

mRNA sequence

ATGGGAGTCTTCACCTACGAAAACGAAGTGGCGTCGGTCATTCCTCCAGAGAAGTTCTTCAAGGCATTTATCCTTGGTGCCGACCAATTATATCCCAAGATTGTGCCAAATCAGCCTCAATCCGTTCTCGAAGGAGATGGTGGGCCCGGAACTATCAAGACCATCTCCTTCAGTGTCGGGGATCAAGTGAAAACCATAAAGCACAGGTTGGACGTAATAGATGAAGCATCGCGAACGTACAAGTACACGGTGTTAGAAGGCGAGCTTTTATCGGACGCCATTGACAAAATTTCAAAGGAAATAAAGGTGGTTGAAGGTCCTTCTGGAGGGTCCATTTTGAAGAGCACAAGCGTTTACCACACCAAGGGAGACCACCAAATCGAGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGGATTGTTGATTCATCACCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTTCATCCGAGTGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGTGTTTAAATAA

Coding sequence (CDS)

ATGGGAGTCTTCACCTACGAAAACGAAGTGGCGTCGGTCATTCCTCCAGAGAAGTTCTTCAAGGCATTTATCCTTGGTGCCGACCAATTATATCCCAAGATTGTGCCAAATCAGCCTCAATCCGTTCTCGAAGGAGATGGTGGGCCCGGAACTATCAAGACCATCTCCTTCAGTGTCGGGGATCAAGTGAAAACCATAAAGCACAGGTTGGACGTAATAGATGAAGCATCGCGAACGTACAAGTACACGGTGTTAGAAGGCGAGCTTTTATCGGACGCCATTGACAAAATTTCAAAGGAAATAAAGGTGGTTGAAGGTCCTTCTGGAGGGTCCATTTTGAAGAGCACAAGCGTTTACCACACCAAGGGAGACCACCAAATCGAGATCATTTCTGATGAAGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGAGATAGATCTTCCAACGAACAAGACTTTTTTCGAATAAGCCAATTCATTTGGGATCCTGCAGATCCACTCTTTTTCCTATTCAAAGATCAGCCTTTTGTCTCTGTGTTTTCGCATCGAGAATTCTTTGCAGACGAAGAGATGTCAAAGGGGCTGCTTACTTCCCAAACAGATCTTCCTATATGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGCACTTCGGATTGTTGATTCATCACCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTTCATCCGAGTGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGTGTTTAAATAA

Protein sequence

MGVFTYENEVASVIPPEKFFKAFILGADQLYPKIVPNQPQSVLEGDGGPGTIKTISFSVGDQVKTIKHRLDVIDEASRTYKYTVLEGELLSDAIDKISKEIKVVEGPSGGSILKSTSVYHTKGDHQIEIISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTSSECYQYLSNLFLSNVFK

Homology

[Close]

BLAST of Carg18866 vs. NCBI nr
Match: KAG7026333.1 (Protein Ycf2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 542.0 bits (1395), Expect = 3.0e-150
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MGVFTYENEVASVIPPEKFFKAFILGADQLYPKIVPNQPQSVLEGDGGPGTIKTISFSVG 60
           MGVFTYENEVASVIPPEKFFKAFILGADQLYPKIVPNQPQSVLEGDGGPGTIKTISFSVG
Sbjct: 1   MGVFTYENEVASVIPPEKFFKAFILGADQLYPKIVPNQPQSVLEGDGGPGTIKTISFSVG 60

Query: 61  DQVKTIKHRLDVIDEASRTYKYTVLEGELLSDAIDKISKEIKVVEGPSGGSILKSTSVYH 120
           DQVKTIKHRLDVIDEASRTYKYTVLEGELLSDAIDKISKEIKVVEGPSGGSILKSTSVYH
Sbjct: 61  DQVKTIKHRLDVIDEASRTYKYTVLEGELLSDAIDKISKEIKVVEGPSGGSILKSTSVYH 120

Query: 121 TKGDHQIEIISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQ 180
           TKGDHQIEIISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQ
Sbjct: 121 TKGDHQIEIISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQ 180

Query: 181 PFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNS 240
           PFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNS
Sbjct: 181 PFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNS 240

Query: 241 SLSNGFFRSNTSSECYQYLSNLFLSNVFK 270
           SLSNGFFRSNTSSECYQYLSNLFLSNVFK
Sbjct: 241 SLSNGFFRSNTSSECYQYLSNLFLSNVFK 269

[Close]

BLAST of Carg18866 vs. NCBI nr
Match: YP_009447494.1 (Ycf2 [Cucurbita maxima] >YP_009447512.1 Ycf2 [Cucurbita maxima] >ATY69943.1 Ycf2 [Cucurbita maxima] >ATY69945.1 Ycf2 [Cucurbita maxima])

HSP 1 Score: 277.7 bits (709), Expect = 1.0e-70
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 129  IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 188
            IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH
Sbjct: 2127 IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 2186

Query: 189  REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 248
            REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR
Sbjct: 2187 REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 2246

Query: 249  SNTSSECYQYLSNLFLSN 267
            SNT SE YQYLSNLFLSN
Sbjct: 2247 SNTPSESYQYLSNLFLSN 2264

[Close]

BLAST of Carg18866 vs. NCBI nr
Match: QWV60883.1 (hypothetical protein RF2 [Cucurbita ficifolia] >QWV60904.1 hypothetical protein RF2 [Cucurbita ficifolia] >QZL38824.1 Ycf2 [Cucurbita ficifolia] >QZL38831.1 Ycf2 [Cucurbita ficifolia])

HSP 1 Score: 277.7 bits (709), Expect = 1.0e-70
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 129  IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 188
            IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH
Sbjct: 2127 IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 2186

Query: 189  REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 248
            REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR
Sbjct: 2187 REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 2246

Query: 249  SNTSSECYQYLSNLFLSN 267
            SNT SE YQYLSNLFLSN
Sbjct: 2247 SNTPSESYQYLSNLFLSN 2264

[Close]

BLAST of Carg18866 vs. NCBI nr
Match: YP_009447579.1 (Ycf2 [Cucurbita moschata] >YP_009447598.1 Ycf2 [Cucurbita moschata] >ATY70023.1 Ycf2 [Cucurbita moschata] >ATY70029.1 Ycf2 [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 1.0e-70
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 129  IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 188
            IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH
Sbjct: 2139 IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 2198

Query: 189  REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 248
            REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR
Sbjct: 2199 REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 2258

Query: 249  SNTSSECYQYLSNLFLSN 267
            SNT SE YQYLSNLFLSN
Sbjct: 2259 SNTPSESYQYLSNLFLSN 2276

[Close]

BLAST of Carg18866 vs. NCBI nr
Match: YP_009505123.1 (Ycf2 [Cucurbita pepo] >YP_009505141.1 Ycf2 [Cucurbita pepo] >AWX90420.1 Ycf2 [Cucurbita pepo] >AWX90422.1 Ycf2 [Cucurbita pepo])

HSP 1 Score: 272.7 bits (696), Expect = 3.4e-69
Identity = 136/140 (97.14%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 129  IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 188
            IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH
Sbjct: 2145 IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 2204

Query: 189  REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQE--KHFGLLIHHQRWLRTNSSLSNGF 248
            REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQE  KHFGLLIHHQRWLRTNSSLSNGF
Sbjct: 2205 REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKQKHFGLLIHHQRWLRTNSSLSNGF 2264

Query: 249  FRSNTSSECYQYLSNLFLSN 267
            FRSNT SE YQYLSNLFLSN
Sbjct: 2265 FRSNTPSESYQYLSNLFLSN 2284

[Close]

BLAST of Carg18866 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.0e-64
Identity = 122/134 (91.04%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 133  EENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF 192
            +ENDSEFLQSGT+QYQTRDRSS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF
Sbjct: 2120 QENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF 2179

Query: 193  ADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTS 252
            ADEEMSKGLLTSQTD P  IYKRWFIKN QEKHF LLIH QRWLRTNSSLSNGFFRSNT 
Sbjct: 2180 ADEEMSKGLLTSQTDSPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTP 2239

Query: 253  SECYQYLSNLFLSN 267
            SE YQYLSNLFLSN
Sbjct: 2240 SESYQYLSNLFLSN 2253

[Close]

BLAST of Carg18866 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.8e-64
Identity = 126/143 (88.11%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 129  IISDEE-----NDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFV 188
            II DE+     NDSEFLQSGTVQYQTRDRSS EQ FFRISQFIWDPADPLFFLFKDQPFV
Sbjct: 2129 IIYDEKDELQANDSEFLQSGTVQYQTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFV 2188

Query: 189  SVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLS 248
            SVFSHREFFADEEMSKGLLTSQTD P  IYKRWFIKN QEKHF LLIH QRWLRTNSSLS
Sbjct: 2189 SVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLS 2248

Query: 249  NGFFRSNTSSECYQYLSNLFLSN 267
            NGFFRSNT SE YQYLSNLFLSN
Sbjct: 2249 NGFFRSNTPSESYQYLSNLFLSN 2271

[Close]

BLAST of Carg18866 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.2e-63
Identity = 121/134 (90.30%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 133  EENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF 192
            +ENDSEFLQSGT+QYQTRDRSS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF
Sbjct: 2140 QENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF 2199

Query: 193  ADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTS 252
            ADEEMSKGLLTSQTD P  IYKRWFIKN QEKHF LLIH QRWLRTNSSLSNG FRSNT 
Sbjct: 2200 ADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGSFRSNTP 2259

Query: 253  SECYQYLSNLFLSN 267
            SE YQYLSNLFLSN
Sbjct: 2260 SESYQYLSNLFLSN 2273

[Close]

BLAST of Carg18866 vs. ExPASy Swiss-Prot
Match: B1NWJ3 (Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.9e-63
Identity = 126/154 (81.82%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 118  VYHTKGDHQIEIISDE-----ENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADP 177
            +Y  +  +  EII DE     ENDSEFLQSGT+QYQ RDRSS EQ FFRISQFIWDPADP
Sbjct: 2132 IYDEEIIYDEEIIYDEEDELQENDSEFLQSGTMQYQIRDRSSKEQGFFRISQFIWDPADP 2191

Query: 178  LFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHH 237
            LFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  IYKRWFIKN QEK F LLIH 
Sbjct: 2192 LFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKRFELLIHR 2251

Query: 238  QRWLRTNSSLSNGFFRSNTSSECYQYLSNLFLSN 267
            QRWLRTNSSLSNGFFRSNT SE YQYLSNLFLSN
Sbjct: 2252 QRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSN 2285

[Close]

BLAST of Carg18866 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.9e-63
Identity = 120/134 (89.55%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 133  EENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF 192
            +ENDSEFLQSGT+QYQTRDRSS EQ FFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF
Sbjct: 2125 QENDSEFLQSGTMQYQTRDRSSKEQGFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF 2184

Query: 193  ADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTS 252
            ADEEMSKGLLTSQTDLP  IYKRWFIKN QEK+F LLI+ QRWLRTNSSLSNGFFRSNT 
Sbjct: 2185 ADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKYFELLIYRQRWLRTNSSLSNGFFRSNTP 2244

Query: 253  SECYQYLSNLFLSN 267
            SE YQYLS LFLSN
Sbjct: 2245 SESYQYLSKLFLSN 2258

[Close]

BLAST of Carg18866 vs. ExPASy TrEMBL
Match: A0A2H4T233 (Protein Ycf2 OS=Cucurbita maxima OX=3661 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 5.1e-71
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 129  IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 188
            IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH
Sbjct: 2127 IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 2186

Query: 189  REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 248
            REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR
Sbjct: 2187 REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 2246

Query: 249  SNTSSECYQYLSNLFLSN 267
            SNT SE YQYLSNLFLSN
Sbjct: 2247 SNTPSESYQYLSNLFLSN 2264

[Close]

BLAST of Carg18866 vs. ExPASy TrEMBL
Match: A0A2H4T2B6 (Protein Ycf2 OS=Cucurbita moschata OX=3662 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 5.1e-71
Identity = 136/138 (98.55%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 129  IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 188
            IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH
Sbjct: 2139 IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 2198

Query: 189  REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 248
            REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR
Sbjct: 2199 REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFR 2258

Query: 249  SNTSSECYQYLSNLFLSN 267
            SNT SE YQYLSNLFLSN
Sbjct: 2259 SNTPSESYQYLSNLFLSN 2276

[Close]

BLAST of Carg18866 vs. ExPASy TrEMBL
Match: A0A344AXU5 (Protein Ycf2 OS=Cucurbita pepo OX=3663 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.6e-69
Identity = 136/140 (97.14%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 129  IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 188
            IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH
Sbjct: 2145 IISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSH 2204

Query: 189  REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQE--KHFGLLIHHQRWLRTNSSLSNGF 248
            REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQE  KHFGLLIHHQRWLRTNSSLSNGF
Sbjct: 2205 REFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKQKHFGLLIHHQRWLRTNSSLSNGF 2264

Query: 249  FRSNTSSECYQYLSNLFLSN 267
            FRSNT SE YQYLSNLFLSN
Sbjct: 2265 FRSNTPSESYQYLSNLFLSN 2284

[Close]

BLAST of Carg18866 vs. ExPASy TrEMBL
Match: A0A6J1EWZ2 (major allergen Pru ar 1-like OS=Cucurbita moschata OX=3662 GN=LOC111436911 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 3.5e-64
Identity = 131/143 (91.61%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MGVFTYENEVASVIPPEKFFKAFILGADQLYPKIVPNQPQSVLEGDGGPGTIKTISFSVG 60
           MGVFTYENEVASVIPPEKFFKAFILGADQLYPKIVPNQPQSVLEGDGGPGTIKTISFSVG
Sbjct: 1   MGVFTYENEVASVIPPEKFFKAFILGADQLYPKIVPNQPQSVLEGDGGPGTIKTISFSVG 60

Query: 61  DQVKTIKHRLDVIDEASRTYKYTVLEGELLSDAIDKISKEIKVVEGPSGGSILKSTSVYH 120
           D+VKTIKHRLDVIDEASRTYKYTVLEGELLSDAIDKISKEIKVVEGPSGGSILKSTSVYH
Sbjct: 61  DEVKTIKHRLDVIDEASRTYKYTVLEGELLSDAIDKISKEIKVVEGPSGGSILKSTSVYH 120

Query: 121 TKGDHQIEIISDEENDSEFLQSG 144
           TKGDHQI        D E L+SG
Sbjct: 121 TKGDHQI--------DEEKLKSG 135

[Close]

BLAST of Carg18866 vs. ExPASy TrEMBL
Match: A0A291IAS5 (Protein Ycf2 OS=Gynostemma pentagynum OX=555432 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 6.0e-64
Identity = 125/134 (93.28%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 133  EENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF 192
            +ENDSEFLQSGTVQYQTRDRSS EQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF
Sbjct: 2119 QENDSEFLQSGTVQYQTRDRSSKEQDFFRISQFIWDPADPLFFLFKDQPFVSVFSHREFF 2178

Query: 193  ADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFGLLIHHQRWLRTNSSLSNGFFRSNTS 252
            ADEEMSKGLLTSQTDLP  IYKRWFIKN QEKHFGLLIH QRWLRT SSLSNGFFRSNT 
Sbjct: 2179 ADEEMSKGLLTSQTDLPTSIYKRWFIKNTQEKHFGLLIHRQRWLRTTSSLSNGFFRSNTP 2238

Query: 253  SECYQYLSNLFLSN 267
            SE YQYLSNLFLSN
Sbjct: 2239 SESYQYLSNLFLSN 2252

[Close]

BLAST of Carg18866 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-63
Identity = 125/159 (78.62%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 108  SGGSILKSTSVYHTKGDHQIEIISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIW 167
            S GS      +Y    D + E+   +ENDSEFLQSGT+QYQ RDRSS EQ FFRISQFIW
Sbjct: 2116 SAGSFRGKRIIY----DEKYEL---QENDSEFLQSGTMQYQRRDRSSKEQGFFRISQFIW 2175

Query: 168  DPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFG 227
            DPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  IYKRWFIKN QEKHF 
Sbjct: 2176 DPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFE 2235

Query: 228  LLIHHQRWLRTNSSLSNGFFRSNTSSECYQYLSNLFLSN 267
            LLI  QRWLRTNSSLSNGFFRSNT SE YQYLSNLF+SN
Sbjct: 2236 LLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISN 2267

[Close]

BLAST of Carg18866 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-63
Identity = 125/159 (78.62%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 108  SGGSILKSTSVYHTKGDHQIEIISDEENDSEFLQSGTVQYQTRDRSSNEQDFFRISQFIW 167
            S GS      +Y    D + E+   +ENDSEFLQSGT+QYQ RDRSS EQ FFRISQFIW
Sbjct: 2116 SAGSFRGKRIIY----DEKYEL---QENDSEFLQSGTMQYQRRDRSSKEQGFFRISQFIW 2175

Query: 168  DPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPICIYKRWFIKNMQEKHFG 227
            DPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTD P  IYKRWFIKN QEKHF 
Sbjct: 2176 DPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIKNTQEKHFE 2235

Query: 228  LLIHHQRWLRTNSSLSNGFFRSNTSSECYQYLSNLFLSN 267
            LLI  QRWLRTNSSLSNGFFRSNT SE YQYLSNLF+SN
Sbjct: 2236 LLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISN 2267

The following BLAST results are available for this feature:

BLAST of Carg18866 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026333.1	3.0e-150	100.00	Protein Ycf2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
YP_009447494.1	1.0e-70	98.55	Ycf2 [Cucurbita maxima] >YP_009447512.1 Ycf2 [Cucurbita maxima] >ATY69943.1 Ycf2...	[more]
QWV60883.1	1.0e-70	98.55	hypothetical protein RF2 [Cucurbita ficifolia] >QWV60904.1 hypothetical protein ...	[more]
YP_009447579.1	1.0e-70	98.55	Ycf2 [Cucurbita moschata] >YP_009447598.1 Ycf2 [Cucurbita moschata] >ATY70023.1 ...	[more]
YP_009505123.1	3.4e-69	97.14	Ycf2 [Cucurbita pepo] >YP_009505141.1 Ycf2 [Cucurbita pepo] >AWX90420.1 Ycf2 [Cu...	[more]

BLAST of Carg18866 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KT6	2.0e-64	91.04	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
B1A978	5.8e-64	88.11	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
Q0ZIV6	2.2e-63	90.30	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]
B1NWJ3	4.9e-63	81.82	Protein Ycf2 OS=Manihot esculenta OX=3983 GN=ycf2 PE=3 SV=1	[more]
Q09WV7	4.9e-63	89.55	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]

BLAST of Carg18866 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H4T233	5.1e-71	98.55	Protein Ycf2 OS=Cucurbita maxima OX=3661 GN=ycf2 PE=3 SV=1	[more]
A0A2H4T2B6	5.1e-71	98.55	Protein Ycf2 OS=Cucurbita moschata OX=3662 GN=ycf2 PE=3 SV=1	[more]
A0A344AXU5	1.6e-69	97.14	Protein Ycf2 OS=Cucurbita pepo OX=3663 GN=ycf2 PE=3 SV=1	[more]
A0A6J1EWZ2	3.5e-64	91.61	major allergen Pru ar 1-like OS=Cucurbita moschata OX=3662 GN=LOC111436911 PE=3 ...	[more]
A0A291IAS5	6.0e-64	93.28	Protein Ycf2 OS=Gynostemma pentagynum OX=555432 GN=ycf2 PE=3 SV=1	[more]

BLAST of Carg18866 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.3e-63	78.62	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.3e-63	78.62	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024949	Bet v I type allergen	PRINTS	PR00634	BETALLERGEN	coord: 83..96 score: 35.94 coord: 108..124 score: 62.33 coord: 3..23 score: 51.22 coord: 26..36 score: 44.58 coord: 48..57 score: 72.45 coord: 64..83 score: 37.61
IPR023393	START-like domain superfamily	GENE3D	3.30.530.20		coord: 2..150 e-value: 3.4E-40 score: 139.6
IPR000916	Bet v I/Major latex protein	PFAM	PF00407	Bet_v_1	coord: 1..126 e-value: 2.2E-23 score: 82.9
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 134..266
None	No IPR available	PANTHER	PTHR33078:SF65	SUBFAMILY NOT NAMED	coord: 134..266
None	No IPR available	CDD	cd07816	Bet_v1-like	coord: 4..147 e-value: 1.79499E-47 score: 153.114
None	No IPR available	SUPERFAMILY	55961	Bet v1-like	coord: 2..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18866-RA	Carg18866-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0006952	defense response
biological_process	GO:0043086	negative regulation of catalytic activity
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0010427	abscisic acid binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0004864	protein phosphatase inhibitor activity
molecular_function	GO:0038023	signaling receptor activity