Carg18829 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18829
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	WD repeat-containing protein 43
Location	Carg_Chr08: 3700816 .. 3702812 (+)
RNA-Seq Expression	Carg18829
Synteny	Carg18829

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCTGGAAAACTTAGTCAAGGTCCTGTTCTGTCCATGAAGCATCCTCCGTTTGTTTCTGAATGCAGAAATATTAACAATGGGGAAGATAGCATAGTTGTCTTGTCAGTATCAGTATCAGGTGTAGCTTATTTATGGAAATTAAAGTTCCTATCAGAAGACAAGGTTAATCCGACTAAAGTCACTGTTAAAGTTAACAACGTCGAATCAGCTGAGGAAAACCATGGAAGTGCTAAGAAGAATCGTATTTCTGTCCTCTCTTCCACAATACAAGGTTTAGGAGACAATGAAGTGTCAGTCCTTGTCACTCATGGCTCCATGGACCTACCGCAGCATACTGTCCTTAATATCGGTTATCCTGCAAAGGAAGACGCAAATATCGCACTTGAGAAAGAAGGTTTGACAAACTTATCATTTTGCCATTCTTTTCCTTATTTCCCCTGTGCCCCATTCTCTTACAGGTAAGTACAATGTGTATACTCTGTCACAGGTCCCCACGAGATCAAACAAGCAGTTACTTCGCCTAAAAGTAAGAAAAGCAAAAAGAAGAGAGCTGCATCTGATCTCGACAGTCAGAAAGCTGGAGATGTCAGTGATGTCGGTAAGGATTGTGTTTGAGCCATTGCCTGTGGTTCTCGAATTTCCTTTGATGGTCTACAACTCTCCAACTCTACCTTCCAAAATATGTCTGGAGCAAATAGCCTAATACTATTTTCTATCTCCACCGTTAACTTGATATCTGGTGATTGTAGGCAACGAAGATATGTCTAACGTTCTATTTAATGATGATTTAAACGAGCCAACCATGGGAGATAAACTTGCGAGTTTGAATTTAGAGGAACAGAACGAAGACGAGAACCATGAACAAGATGAACCTTCCGTCCCTGCTATCCCACCAAGTGCAGACTCTGTTCAGGTTTTGCTCAAGCAAGCACTACGTGCAGACGATCGTGCCCTTTTGCTAGAATGCTTATACACCAAGGATGATAAGGTAATCAATTTATAACCAATCCTATCTGTTTTCGTTATCTACTAACCTTCTTTATGCTGAAACATCATATATCATCTGTTATCAGGTCATCTCAAAATCAATAGCACAACTAAATTCTTCAGATGTTCTCAAGCTTTTGCACGCTCTCATATCCATTATCCAGTCAAGGTATTCTTACCTATTTCAAGATTGTTTGATGCTCATAAATGTGTTCTTGGAATAAAAGATACCATATCAAAGTTTCATGGCTTATCTACAGAGGGGCAATTCTTGTATGCGCCATCCCTTGGCTGAGAGGTTTACTTCTTCAACATGCCAGTAGAATAATGTCTCAAGAATCTTCTCTACTCGCCTTGAATTCTCTATATCAGGTTAGCAATGGTTTGGCTCGACACTTCCCAAATATGCAGTTCCCTCACATCCATTAATCATATGTTCTCTAGTAGATAAACACAAAATTTCCATGTATGTGCAGCTCATTGAGTCTAGAATTTCAACTTTCCAATCTGCTCTTCTGCTATCAAGTAGCTTAGACTTCCTTTACACAGGGGTAAGTGCATTCTTTTCCTTCCCACGTAACGTGGCTGAACTTGAGTTTCACCATAACCTTCTTCTTCAAGCTCTATGAGGTGAATACTCGTGTCTTCTTTCTCACAGGTCCTTGATGAGGAGGCGGAAGAAAATGATGCCATTGTACCGATTATTTACGAGGAGGACGATAGCGATGATAAGGAATCGTCGGGAGATGAAATGGAAACCGATGAAGAGGGTGGAGGAGTTGAAGTAGAAGCCTTTGACGATCTTAGTGCTGGTGAAGTGGATGATGATATGAGTGAATGATGATTATGAAGCCTACAAAATCCTTTGGGATTTCATTTTTTGACCTTTGTTTATCCAAAATGAGCTTCTTCTGTAATTTTGACAAGAGTTATCCTCCTAATGAATCAGAACTATATAAACCCATTGCCCAAGTTGCAAACTTCTGTGGTTTCATTCTTTCACC

mRNA sequence

ATGAGTGCTGGAAAACTTAGTCAAGGTCCTGTTCTGTCCATGAAGCATCCTCCGTTTGTTTCTGAATGCAGAAATATTAACAATGGGGAAGATAGCATAGTTGTCTTGTCAGTATCAGTATCAGGTGTAGCTTATTTATGGAAATTAAAGTTCCTATCAGAAGACAAGGTTAATCCGACTAAAGTCACTGTTAAAGTTAACAACGTCGAATCAGCTGAGGAAAACCATGGAAGTGCTAAGAAGAATCGTATTTCTGTCCTCTCTTCCACAATACAAGGTTTAGGAGACAATGAAGTGTCAGTCCTTGTCACTCATGGCTCCATGGACCTACCGCAGCATACTGTCCTTAATATCGGTTATCCTGCAAAGGAAGACGCAAATATCGCACTTGAGAAAGAAGGTCCCCACGAGATCAAACAAGCAGTTACTTCGCCTAAAAGTAAGAAAAGCAAAAAGAAGAGAGCTGCATCTGATCTCGACAGTCAGAAAGCTGGAGATGTCAGTGATGTCGGCAACGAAGATATGTCTAACGTTCTATTTAATGATGATTTAAACGAGCCAACCATGGGAGATAAACTTGCGAGTTTGAATTTAGAGGAACAGAACGAAGACGAGAACCATGAACAAGATGAACCTTCCGTCCCTGCTATCCCACCAAGTGCAGACTCTGTTCAGGTTTTGCTCAAGCAAGCACTACGTGCAGACGATCGTGCCCTTTTGCTAGAATGCTTATACACCAAGGATGATAAGGTCATCTCAAAATCAATAGCACAACTAAATTCTTCAGATGTTCTCAAGCTTTTGCACGCTCTCATATCCATTATCCAGTCAAGAGGGGCAATTCTTGTATGCGCCATCCCTTGGCTGAGAGGTTTACTTCTTCAACATGCCAGTAGAATAATGTCTCAAGAATCTTCTCTACTCGCCTTGAATTCTCTATATCAGCTCATTGAGTCTAGAATTTCAACTTTCCAATCTGCTCTTCTGCTATCAAGTAGCTTAGACTTCCTTTACACAGGGGTCCTTGATGAGGAGGCGGAAGAAAATGATGCCATTGTACCGATTATTTACGAGGAGGACGATAGCGATGATAAGGAATCGTCGGGAGATGAAATGGAAACCGATGAAGAGGGTGGAGGAGTTGAAGTAGAAGCCTTTGACGATCTTAGTGCTGGTGAAGTGGATGATGATATGAGTGAATGATGATTATGAAGCCTACAAAATCCTTTGGGATTTCATTTTTTGACCTTTGTTTATCCAAAATGAGCTTCTTCTGTAATTTTGACAAGAGTTATCCTCCTAATGAATCAGAACTATATAAACCCATTGCCCAAGTTGCAAACTTCTGTGGTTTCATTCTTTCACC

Coding sequence (CDS)

ATGAGTGCTGGAAAACTTAGTCAAGGTCCTGTTCTGTCCATGAAGCATCCTCCGTTTGTTTCTGAATGCAGAAATATTAACAATGGGGAAGATAGCATAGTTGTCTTGTCAGTATCAGTATCAGGTGTAGCTTATTTATGGAAATTAAAGTTCCTATCAGAAGACAAGGTTAATCCGACTAAAGTCACTGTTAAAGTTAACAACGTCGAATCAGCTGAGGAAAACCATGGAAGTGCTAAGAAGAATCGTATTTCTGTCCTCTCTTCCACAATACAAGGTTTAGGAGACAATGAAGTGTCAGTCCTTGTCACTCATGGCTCCATGGACCTACCGCAGCATACTGTCCTTAATATCGGTTATCCTGCAAAGGAAGACGCAAATATCGCACTTGAGAAAGAAGGTCCCCACGAGATCAAACAAGCAGTTACTTCGCCTAAAAGTAAGAAAAGCAAAAAGAAGAGAGCTGCATCTGATCTCGACAGTCAGAAAGCTGGAGATGTCAGTGATGTCGGCAACGAAGATATGTCTAACGTTCTATTTAATGATGATTTAAACGAGCCAACCATGGGAGATAAACTTGCGAGTTTGAATTTAGAGGAACAGAACGAAGACGAGAACCATGAACAAGATGAACCTTCCGTCCCTGCTATCCCACCAAGTGCAGACTCTGTTCAGGTTTTGCTCAAGCAAGCACTACGTGCAGACGATCGTGCCCTTTTGCTAGAATGCTTATACACCAAGGATGATAAGGTCATCTCAAAATCAATAGCACAACTAAATTCTTCAGATGTTCTCAAGCTTTTGCACGCTCTCATATCCATTATCCAGTCAAGAGGGGCAATTCTTGTATGCGCCATCCCTTGGCTGAGAGGTTTACTTCTTCAACATGCCAGTAGAATAATGTCTCAAGAATCTTCTCTACTCGCCTTGAATTCTCTATATCAGCTCATTGAGTCTAGAATTTCAACTTTCCAATCTGCTCTTCTGCTATCAAGTAGCTTAGACTTCCTTTACACAGGGGTCCTTGATGAGGAGGCGGAAGAAAATGATGCCATTGTACCGATTATTTACGAGGAGGACGATAGCGATGATAAGGAATCGTCGGGAGATGAAATGGAAACCGATGAAGAGGGTGGAGGAGTTGAAGTAGAAGCCTTTGACGATCTTAGTGCTGGTGAAGTGGATGATGATATGAGTGAATGA

Protein sequence

MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE

Homology

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BLAST of Carg18829 vs. NCBI nr
Match: KAG7025769.1 (WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 739.6 bits (1908), Expect = 1.4e-209
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT
Sbjct: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY
Sbjct: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120

Query: 121 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 180
           PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF
Sbjct: 121 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 180

Query: 181 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 240
           NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL
Sbjct: 181 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 240

Query: 241 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 300
           LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Sbjct: 241 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 300

Query: 301 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 360
           MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED
Sbjct: 301 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 360

Query: 361 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
           DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Sbjct: 361 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 400

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BLAST of Carg18829 vs. NCBI nr
Match: XP_022964606.1 (WD repeat-containing protein 43 isoform X1 [Cucurbita moschata])

HSP 1 Score: 738.0 bits (1904), Expect = 4.2e-209
Identity = 399/400 (99.75%), Postives = 400/400 (100.00%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT
Sbjct: 216 MSAGKLSRGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 275

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY
Sbjct: 276 KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 335

Query: 121 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 180
           PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF
Sbjct: 336 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 395

Query: 181 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 240
           NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL
Sbjct: 396 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 455

Query: 241 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 300
           LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Sbjct: 456 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 515

Query: 301 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 360
           MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED
Sbjct: 516 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 575

Query: 361 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
           DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Sbjct: 576 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 615

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BLAST of Carg18829 vs. NCBI nr
Match: KAG6593430.1 (WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 736.5 bits (1900), Expect = 1.2e-208
Identity = 398/400 (99.50%), Postives = 399/400 (99.75%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT
Sbjct: 216 MSAGKLSRGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 275

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY
Sbjct: 276 KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 335

Query: 121 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 180
           PAKEDANI LEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF
Sbjct: 336 PAKEDANITLEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 395

Query: 181 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 240
           NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL
Sbjct: 396 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 455

Query: 241 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 300
           LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Sbjct: 456 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 515

Query: 301 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 360
           MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED
Sbjct: 516 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 575

Query: 361 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
           DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Sbjct: 576 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 615

[Close]

BLAST of Carg18829 vs. NCBI nr
Match: XP_023513462.1 (WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 717.2 bits (1850), Expect = 7.7e-203
Identity = 387/400 (96.75%), Postives = 396/400 (99.00%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           +SAGKLS+GPVLSMKHPPFVSECRNI+NGEDSIVVLSVSVSGVAYLWKLKFLSE KV+PT
Sbjct: 216 LSAGKLSRGPVLSMKHPPFVSECRNISNGEDSIVVLSVSVSGVAYLWKLKFLSEGKVSPT 275

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KVTVKVNNVESAEE+HGSAKKNRISV+SSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY
Sbjct: 276 KVTVKVNNVESAEESHGSAKKNRISVISSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 335

Query: 121 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 180
           PAKED NIALEKEGPHEI+QAVTSPKSKKSKKKRAASDLDSQ AGDVSDVGNED SNVLF
Sbjct: 336 PAKEDVNIALEKEGPHEIEQAVTSPKSKKSKKKRAASDLDSQTAGDVSDVGNEDTSNVLF 395

Query: 181 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 240
           NDDLNEPTMGDKLASLNLE+QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL
Sbjct: 396 NDDLNEPTMGDKLASLNLEDQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 455

Query: 241 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 300
           LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Sbjct: 456 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 515

Query: 301 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 360
           MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLD+EAEENDAIVPIIYEED
Sbjct: 516 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDKEAEENDAIVPIIYEED 575

Query: 361 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
           DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Sbjct: 576 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 615

[Close]

BLAST of Carg18829 vs. NCBI nr
Match: XP_022964607.1 (WD repeat-containing protein 43 isoform X2 [Cucurbita moschata])

HSP 1 Score: 709.1 bits (1829), Expect = 2.1e-200
Identity = 389/400 (97.25%), Postives = 390/400 (97.50%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT
Sbjct: 216 MSAGKLSRGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 275

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVL    
Sbjct: 276 KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVL---- 335

Query: 121 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 180
                 NIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF
Sbjct: 336 ------NIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 395

Query: 181 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 240
           NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL
Sbjct: 396 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 455

Query: 241 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 300
           LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Sbjct: 456 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 515

Query: 301 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 360
           MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED
Sbjct: 516 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 575

Query: 361 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
           DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Sbjct: 576 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 605

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BLAST of Carg18829 vs. ExPASy Swiss-Prot
Match: Q15061 (WD repeat-containing protein 43 OS=Homo sapiens OX=9606 GN=WDR43 PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-06
Identity = 60/220 (27.27%), Postives = 105/220 (47.73%), Query Frame = 0


Query: 185 NEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECL 244
           NE ++ ++L +++++   + +   Q            +S  VLL Q L ++D  +L + L
Sbjct: 434 NEVSIEERLGAMDIDTHKKGKEDLQ-----------TNSFPVLLTQGLESNDFEMLNKVL 493

Query: 245 YTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQE 304
            T++  +I K++ ++    ++ LL  L   +Q      V  + WL+ +L  HAS + +  
Sbjct: 494 QTRNVNLIKKTVLRMPLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLSTLP 553

Query: 305 SSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEE----AEENDAIVPIIYEED 364
             +  L +LYQL+ESR+ TFQ    L   L  L T V   E    A        ++YEE+
Sbjct: 554 DLVPQLGTLYQLMESRVKTFQKLSHLHGKLILLITQVTASEKTKGATSPGQKAKLVYEEE 613

Query: 365 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
            S++ ES  +  + D E    E E   + S  E D+D+ E
Sbjct: 614 SSEE-ESDDEIADKDSEDNWDEDE---EESESEKDEDVEE 638

[Close]

BLAST of Carg18829 vs. ExPASy Swiss-Prot
Match: Q6ZQL4 (WD repeat-containing protein 43 OS=Mus musculus OX=10090 GN=Wdr43 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-06
Identity = 60/219 (27.40%), Postives = 102/219 (46.58%), Query Frame = 0


Query: 186 EPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLY 245
           E T+ ++L +++L+ +   ++ +             +S  VLL Q L ++D  +L + L 
Sbjct: 434 EATIEERLGAMDLDRKGRKDDLQ------------TNSFAVLLTQGLESNDFEILNKVLQ 493

Query: 246 TKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQES 305
           TK+  +I +++ ++    V+ LL  L   +Q         I WL+ +L  HAS + +   
Sbjct: 494 TKNVNLIKRTVLRIPLRVVIPLLQELTKRLQGHPNSAALMIQWLKCVLTIHASYLSTLPD 553

Query: 306 SLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEEN----DAIVPIIYEEDD 365
            +  L +LYQL+ESR+ TFQ    L   L  L T V   E  +          ++YEE+ 
Sbjct: 554 LVEQLGTLYQLMESRVKTFQKLSNLHGKLILLVTQVTASEKSKKMTSPGQKAKLVYEEES 613

Query: 366 SDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
           S++ ES  +  E D +    E E  D      VD+D  E
Sbjct: 614 SEE-ESDDEVPEKDSDDNWDEDEDKDSEKDEGVDEDNEE 639

[Close]

BLAST of Carg18829 vs. ExPASy TrEMBL
Match: A0A6J1HJF3 (WD repeat-containing protein 43 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464569 PE=4 SV=1)

HSP 1 Score: 738.0 bits (1904), Expect = 2.0e-209
Identity = 399/400 (99.75%), Postives = 400/400 (100.00%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT
Sbjct: 216 MSAGKLSRGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 275

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY
Sbjct: 276 KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 335

Query: 121 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 180
           PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF
Sbjct: 336 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 395

Query: 181 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 240
           NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL
Sbjct: 396 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 455

Query: 241 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 300
           LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Sbjct: 456 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 515

Query: 301 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 360
           MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED
Sbjct: 516 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 575

Query: 361 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
           DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Sbjct: 576 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 615

[Close]

BLAST of Carg18829 vs. ExPASy TrEMBL
Match: A0A6J1HI85 (WD repeat-containing protein 43 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464569 PE=4 SV=1)

HSP 1 Score: 709.1 bits (1829), Expect = 1.0e-200
Identity = 389/400 (97.25%), Postives = 390/400 (97.50%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT
Sbjct: 216 MSAGKLSRGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 275

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVL    
Sbjct: 276 KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVL---- 335

Query: 121 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 180
                 NIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF
Sbjct: 336 ------NIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 395

Query: 181 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 240
           NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL
Sbjct: 396 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 455

Query: 241 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 300
           LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Sbjct: 456 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 515

Query: 301 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 360
           MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED
Sbjct: 516 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 575

Query: 361 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
           DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Sbjct: 576 DSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 605

[Close]

BLAST of Carg18829 vs. ExPASy TrEMBL
Match: A0A6J1KMD0 (WD repeat-containing protein 43 OS=Cucurbita maxima OX=3661 GN=LOC111494605 PE=4 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 2.9e-195
Identity = 381/401 (95.01%), Postives = 387/401 (96.51%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           MSAGKLS+GPVLSMKHPPF+SECRN+NNGEDSIVVLSVSVSGVAYLWKLKFLSEDKV+PT
Sbjct: 216 MSAGKLSRGPVLSMKHPPFISECRNMNNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVSPT 275

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVL    
Sbjct: 276 KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVL---- 335

Query: 121 PAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLF 180
                 NIALEKEGPHEI+QAVTSPKSKKSKKKRAASDLDSQ AGDVSDVGNED SNVLF
Sbjct: 336 ------NIALEKEGPHEIEQAVTSPKSKKSKKKRAASDLDSQTAGDVSDVGNEDTSNVLF 395

Query: 181 NDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 240
           NDDLNEPTMGDKLA+LNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL
Sbjct: 396 NDDLNEPTMGDKLANLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALL 455

Query: 241 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 300
           LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Sbjct: 456 LECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI 515

Query: 301 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEED 360
           MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLD EAEENDAIVPIIYEED
Sbjct: 516 MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDGEAEENDAIVPIIYEED 575

Query: 361 DSDDKESSGDEMETDEEGGGVEV-EAFDDLSAGEVDDDMSE 401
           DSDDKESSGDEMETDEEGGGVEV EAFDDLSAGEVDDDMSE
Sbjct: 576 DSDDKESSGDEMETDEEGGGVEVEEAFDDLSAGEVDDDMSE 606

[Close]

BLAST of Carg18829 vs. ExPASy TrEMBL
Match: A0A1S3CDX9 (WD repeat-containing protein 43 OS=Cucumis melo OX=3656 GN=LOC103499777 PE=4 SV=1)

HSP 1 Score: 592.8 bits (1527), Expect = 1.1e-165
Identity = 327/411 (79.56%), Postives = 363/411 (88.32%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           MSAGK S+GPVLSM HPPFVSECRN++N EDS+VVLSVSVSG AYLWKLK LSED+V PT
Sbjct: 216 MSAGKFSRGPVLSMNHPPFVSECRNVSNQEDSVVVLSVSVSGAAYLWKLKVLSEDEVIPT 275

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KV+VK N+ +SAEENHGSAKKNR+SVL+S I  +GDNEVSVLVTHGS+DLPQH++L+IGY
Sbjct: 276 KVSVKANDNQSAEENHGSAKKNRVSVLASKIHRIGDNEVSVLVTHGSVDLPQHSLLDIGY 335

Query: 121 PAKEDANIALE-----------KEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSD 180
             KEDAN A E           ++GPHEI+Q +T PKSKKSKKKRAASDLDS  AGDVSD
Sbjct: 336 TVKEDANTAHENKTLQQNDGVSEQGPHEIEQVIT-PKSKKSKKKRAASDLDSPTAGDVSD 395

Query: 181 VGNEDMSNVLFNDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLK 240
           VGN D S+V+FNDDLNEP+MG+KLASLNL +QNED   EQ++PSVP IPPSADSVQVLLK
Sbjct: 396 VGNGDASDVVFNDDLNEPSMGEKLASLNLADQNEDGGREQEDPSVPVIPPSADSVQVLLK 455

Query: 241 QALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWL 300
           QAL ADD ALLLECLYTKDDKVISKSIAQLNSSDVLKLLH++IS IQSRGAILVCA+PWL
Sbjct: 456 QALHADDHALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSVISFIQSRGAILVCALPWL 515

Query: 301 RGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEEN 360
           RGLLLQHAS+IMSQESSLLALNSLYQLIE+RISTFQSALLLSSSLDFLYTGVLDEE  +N
Sbjct: 516 RGLLLQHASKIMSQESSLLALNSLYQLIEARISTFQSALLLSSSLDFLYTGVLDEEENDN 575

Query: 361 DAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE 401
           DAIVPIIYEE+DSD+ E +GDEMETDE+    EVEAFDDLSAGEVDDDMSE
Sbjct: 576 DAIVPIIYEEEDSDENE-TGDEMETDEDDERDEVEAFDDLSAGEVDDDMSE 624

[Close]

BLAST of Carg18829 vs. ExPASy TrEMBL
Match: A0A6J1D938 (WD repeat-containing protein 43 OS=Momordica charantia OX=3673 GN=LOC111018389 PE=4 SV=1)

HSP 1 Score: 592.4 bits (1526), Expect = 1.4e-165
Identity = 328/408 (80.39%), Postives = 361/408 (88.48%), Query Frame = 0


Query: 1   MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPT 60
           MSA KLS+GPVLSMKHPPFVSEC+NI+N EDSIVVLSVSVSGVAY+W+LK LSED+V+P 
Sbjct: 218 MSARKLSRGPVLSMKHPPFVSECKNISNEEDSIVVLSVSVSGVAYVWRLKILSEDEVSPN 277

Query: 61  KVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDLPQHTVLNIGY 120
           KVTVK N+ +SAEENHGSAKKNRISV++S I G GDNEVSVLVTHGSMD PQ ++ NIGY
Sbjct: 278 KVTVKANDAQSAEENHGSAKKNRISVIASRIDGSGDNEVSVLVTHGSMDQPQLSLFNIGY 337

Query: 121 PAKEDANIALEK-----------EGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSD 180
             KED N A EK           +GPHEI+QAVT+PKSKKSKKKRAASD+DS  AGDVS 
Sbjct: 338 SVKEDLNTAHEKKTLQQNDDFSGQGPHEIEQAVTTPKSKKSKKKRAASDIDSLTAGDVSG 397

Query: 181 VGNEDMSNVLFNDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLK 240
           VGN D S+VLFNDD+NEPTMG+KLASLNL +Q+EDE+HEQ+EPSVPAIPPSADSVQVLLK
Sbjct: 398 VGNGDASDVLFNDDINEPTMGEKLASLNLLDQDEDESHEQEEPSVPAIPPSADSVQVLLK 457

Query: 241 QALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWL 300
           QAL ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWL
Sbjct: 458 QALHADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWL 517

Query: 301 RGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEEN 360
           RGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSA+LLSSSLDFLYTGVLDEE ++N
Sbjct: 518 RGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSAVLLSSSLDFLYTGVLDEEVDDN 577

Query: 361 DAIVPIIYEEDDSDDKESSGDEMETDEEGGGVE-VEAFDDLSAGEVDD 397
           DAIVPIIYE++D  D + SGDEMETDE+    E  EAF DLSAGEVDD
Sbjct: 578 DAIVPIIYEDEDDSDDQESGDEMETDEDEEEEEREEAFGDLSAGEVDD 625

[Close]

BLAST of Carg18829 vs. TAIR 10
Match: AT1G15420.1 (CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). )

HSP 1 Score: 204.9 bits (520), Expect = 1.2e-52
Identity = 138/259 (53.28%), Postives = 177/259 (68.34%), Query Frame = 0


Query: 146 KSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEEQNEDE 205
           K KK  KKRA  + D     D     +ED   VL +D LNEPT+GDKL SL+L    +  
Sbjct: 27  KHKKKSKKRAEPEPDIPSTRDSG--LDEDRDGVLVDDTLNEPTIGDKLESLDLLNGEKVN 86

Query: 206 NHEQDEPSVPA--IPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSD 265
           + E +  S P    PP+A SV VLL+QAL ADDR+LLL+CLY +D++VI+ S+A+LNS++
Sbjct: 87  SEESNRDSAPGDDKPPTAASVNVLLRQALHADDRSLLLDCLYNRDEQVIANSVAKLNSAE 146

Query: 266 VLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSLYQLIESRIST 325
           VLKLL+AL+ I+QSRGAIL C IPW++ LLL H+S IMSQESSLLALN++YQLIESR+ST
Sbjct: 147 VLKLLNALLPILQSRGAILACTIPWIKSLLLTHSSGIMSQESSLLALNTMYQLIESRVST 206

Query: 326 FQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDE--METDEEGGGV 385
             +A+ +SS LD L    LDEE +E     P+IYE+ DSD+ E  G E  METDEE    
Sbjct: 207 IHTAVEVSSGLD-LIVDDLDEEEDEG----PVIYEDKDSDEDEEEGIEEAMETDEEADDS 266

Query: 386 EVEAFDDLSAGEVDDDMSE 401
             EA D ++  E  DDMS+
Sbjct: 267 ADEAADGVNDFEGFDDMSD 278

The following BLAST results are available for this feature:

BLAST of Carg18829 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025769.1	1.4e-209	100.00	WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022964606.1	4.2e-209	99.75	WD repeat-containing protein 43 isoform X1 [Cucurbita moschata]	[more]
KAG6593430.1	1.2e-208	99.50	WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023513462.1	7.7e-203	96.75	WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo]	[more]
XP_022964607.1	2.1e-200	97.25	WD repeat-containing protein 43 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg18829 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15061	2.8e-06	27.27	WD repeat-containing protein 43 OS=Homo sapiens OX=9606 GN=WDR43 PE=1 SV=3	[more]
Q6ZQL4	6.3e-06	27.40	WD repeat-containing protein 43 OS=Mus musculus OX=10090 GN=Wdr43 PE=1 SV=2	[more]

BLAST of Carg18829 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJF3	2.0e-209	99.75	WD repeat-containing protein 43 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HI85	1.0e-200	97.25	WD repeat-containing protein 43 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KMD0	2.9e-195	95.01	WD repeat-containing protein 43 OS=Cucurbita maxima OX=3661 GN=LOC111494605 PE=4...	[more]
A0A1S3CDX9	1.1e-165	79.56	WD repeat-containing protein 43 OS=Cucumis melo OX=3656 GN=LOC103499777 PE=4 SV=...	[more]
A0A6J1D938	1.4e-165	80.39	WD repeat-containing protein 43 OS=Momordica charantia OX=3673 GN=LOC111018389 P...	[more]

BLAST of Carg18829 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15420.1	1.2e-52	53.28	CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148)...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007148	Small-subunit processome, Utp12	PFAM	PF04003	Utp12	coord: 236..337 e-value: 5.2E-14 score: 52.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..400
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..187
None	No IPR available	PANTHER	PTHR42968:SF14	OS01G0649000 PROTEIN	coord: 24..400
None	No IPR available	PANTHER	PTHR42968	WD REPEAT-CONTAINING	coord: 24..400

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18829-RA	Carg18829-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus