Carg18828 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18828
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlate embryogenesis abundant protein 1
LocationCarg_Chr08: 3704568 .. 3705068 (+)
RNA-Seq ExpressionCarg18828
SyntenyCarg18828
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTAGTTTACCGCAACCAAATCGATATCAAACGCAGCCGTTTAGAACATATTATATATTTCAATTATTGTGTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGGCAAATTTGTTATTGGAAAAAACTATATTTTAAAAAATTTGCAAATGGGTCCTTACAAAATTGCTTATTTATTTATTTTGATATGGTTTAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

mRNA sequence

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

Coding sequence (CDS)

ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA

Protein sequence

MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Homology
BLAST of Carg18828 vs. NCBI nr
Match: KAG7025770.1 (hypothetical protein SDJN02_12268, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 2.9e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNN 60
          MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNN
Sbjct: 1  MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNN 60

Query: 61 PTNTPSPTI 70
          PTNTPSPTI
Sbjct: 61 PTNTPSPTI 69

BLAST of Carg18828 vs. NCBI nr
Match: XP_022964497.1 (late embryogenesis abundant protein 1 [Cucurbita moschata])

HSP 1 Score: 104.4 bits (259), Expect = 4.1e-19
Identity = 69/111 (62.16%), Postives = 69/111 (62.16%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDE------------------------------------ 60
           MASQQDISHSVGEAVGQAQVKKDE                                    
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ------TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 70
                 TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of Carg18828 vs. NCBI nr
Match: KAG6593431.1 (hypothetical protein SDJN03_12907, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.4 bits (259), Expect = 4.1e-19
Identity = 69/111 (62.16%), Postives = 69/111 (62.16%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDE------------------------------------ 60
           MASQQDISHSVGEAVGQAQVKKDE                                    
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSTSTTLDQSSAAQTASDLKDQA 60

Query: 61  ------TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 70
                 TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of Carg18828 vs. NCBI nr
Match: XP_023000409.1 (late embryogenesis abundant protein 1 [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18
Identity = 68/111 (61.26%), Postives = 68/111 (61.26%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDE------------------------------------ 60
           MASQQDISHSVGE VGQAQVKKDE                                    
Sbjct: 1   MASQQDISHSVGEVVGQAQVKKDEVMNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ------TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 70
                 TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of Carg18828 vs. NCBI nr
Match: XP_023515217.1 (late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.7 bits (252), Expect = 2.6e-18
Identity = 67/111 (60.36%), Postives = 68/111 (61.26%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDE------------------------------------ 60
           MASQQDISH+VGE VGQAQVKKDE                                    
Sbjct: 1   MASQQDISHNVGEVVGQAQVKKDEVVNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ------TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 70
                 TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A6J1HHY8 (late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464504 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 69/111 (62.16%), Postives = 69/111 (62.16%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDE------------------------------------ 60
           MASQQDISHSVGEAVGQAQVKKDE                                    
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ------TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 70
                 TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A6J1KJU5 (late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494669 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.7e-19
Identity = 68/111 (61.26%), Postives = 68/111 (61.26%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDE------------------------------------ 60
           MASQQDISHSVGE VGQAQVKKDE                                    
Sbjct: 1   MASQQDISHSVGEVVGQAQVKKDEVMNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ------TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 70
                 TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 111

BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A5D3CF20 (Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002210 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 53/96 (55.21%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 1  MASQQD-ISHSVGEAVGQAQVKKDE-----------------------------TGEQVK 60
          MAS QD +SH  GE VGQAQVKKDE                             TGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPS 67
          NMAQGAAEAVKNTLGMNTD++SN   N+NNPTN P+
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSN--PNSNNPTNNPT 94

BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A1S3CF46 (late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 53/96 (55.21%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 1  MASQQD-ISHSVGEAVGQAQVKKDE-----------------------------TGEQVK 60
          MAS QD +SH  GE VGQAQVKKDE                             TGEQVK
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPS 67
          NMAQGAAEAVKNTLGMNTD++SN   N+NNPTN P+
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSN--PNSNNPTNNPT 94

BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A6J1GQ03 (late embryogenesis abundant protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456481 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 52/99 (52.53%), Postives = 57/99 (57.58%), Query Frame = 0

Query: 1  MASQQDISHSVGEAVGQAQVKKDE-------------------------------TGEQV 60
          MASQQD+S   GE VGQAQVKKDE                               TGEQV
Sbjct: 1  MASQQDLSFKAGETVGQAQVKKDEVMSQATSTQDAQSAAQTATDLKDQAASFLQQTGEQV 60

Query: 61 KNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPT 69
          K+MAQGAAEAVKNTLGM TD+ +  + N NNPTN PSPT
Sbjct: 61 KSMAQGAAEAVKNTLGMKTDTDTTTSPN-NNPTNNPSPT 98

BLAST of Carg18828 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related )

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 38/113 (33.63%), Postives = 49/113 (43.36%), Query Frame = 0

Query: 1   MASQQDISHSVGEAVGQAQVKKDE------------------------------------ 60
           M+S Q +SHS GE  GQ Q+KK+E                                    
Sbjct: 1   MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60

Query: 61  --------TGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI 70
                   TG QVKNMAQGAA+AVKNTLGM+  ++S ++      +N P   I
Sbjct: 61  QASSVIQQTGGQVKNMAQGAADAVKNTLGMSPATNSPSSPAGTTRSNKPGSKI 113

BLAST of Carg18828 vs. TAIR 10
Match: AT1G15415.1 (The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol. )

HSP 1 Score: 41.2 bits (95), Expect = 4.0e-04
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MASQQDISHSV--GEAVGQAQVKKD-------------ETGEQVKNMAQGAAEAVKNTLG 60
          MAS QD   SV  G+ VGQA VK++             + GE+VK+MA  A+EAVKN LG
Sbjct: 1  MASGQDEEFSVRAGQIVGQAHVKENDCNNSSQASGFLQQKGEKVKSMAHDASEAVKNKLG 60

Query: 61 MNTDSS----SNAAANTNNPTNTPSPTI 70
          +N D++    +    +  NP NT SP++
Sbjct: 61 INNDNNEEYKNKNPLDKKNPNNTTSPSM 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7025770.12.9e-25100.00hypothetical protein SDJN02_12268, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022964497.14.1e-1962.16late embryogenesis abundant protein 1 [Cucurbita moschata][more]
KAG6593431.14.1e-1962.16hypothetical protein SDJN03_12907, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023000409.11.2e-1861.26late embryogenesis abundant protein 1 [Cucurbita maxima][more]
XP_023515217.12.6e-1860.36late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HHY82.0e-1962.16late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464... [more]
A0A6J1KJU55.7e-1961.26late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11149466... [more]
A0A5D3CF201.3e-1055.21Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3CF461.3e-1055.21late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE... [more]
A0A6J1GQ031.7e-1052.53late embryogenesis abundant protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
Match NameE-valueIdentityDescription
AT1G52680.11.0e-0433.63late embryogenesis abundant protein-related / LEA protein-related [more]
AT1G15415.14.0e-0440.91The protein encoded by this gene was identified as a part of pollen proteome by... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..69
NoneNo IPR availablePANTHERPTHR34191:SF9F6D8.10coord: 23..52
NoneNo IPR availablePANTHERPTHR34191:SF9F6D8.10coord: 1..25
IPR039624Stress-induced protein KIN1/KIN2PANTHERPTHR34191LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 1..25
IPR039624Stress-induced protein KIN1/KIN2PANTHERPTHR34191LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 23..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18828-RACarg18828-RAmRNA