Carg18828 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTAGTTTACCGCAACCAAATCGATATCAAACGCAGCCGTTTAGAACATATTATATATTTCAATTATTGTGTCAGGTGAAGAAGGATGAGGTCATCAACCAAGCAGCTAATTCAGCTCAAGAAGCAAAAGACAGCGCATCTACTACCCTTGATCAATCCTCAGCTGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGGCAAATTTGTTATTGGAAAAAACTATATTTTAAAAAATTTGCAAATGGGTCCTTACAAAATTGCTTATTTATTTATTTTGATATGGTTTAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA ATGGCAAGCCAACAAGACATTAGCCACAGCGTCGGCGAGGCCGTCGGCCAAGCTCAGGTGAAGAAGGATGAGACTGGAGAGCAAGTGAAGAACATGGCTCAAGGAGCAGCTGAGGCAGTGAAAAACACTCTTGGGATGAACACTGATAGCAGTTCTAACGCCGCCGCCAACACCAACAACCCTACCAACACTCCATCCCCTACAATCTAA MASQQDISHSVGEAVGQAQVKKDETGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPSPTI Homology
BLAST of Carg18828 vs. NCBI nr
Match: KAG7025770.1 (hypothetical protein SDJN02_12268, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 124.8 bits (312), Expect = 2.9e-25 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of Carg18828 vs. NCBI nr
Match: XP_022964497.1 (late embryogenesis abundant protein 1 [Cucurbita moschata]) HSP 1 Score: 104.4 bits (259), Expect = 4.1e-19 Identity = 69/111 (62.16%), Postives = 69/111 (62.16%), Query Frame = 0
BLAST of Carg18828 vs. NCBI nr
Match: KAG6593431.1 (hypothetical protein SDJN03_12907, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 104.4 bits (259), Expect = 4.1e-19 Identity = 69/111 (62.16%), Postives = 69/111 (62.16%), Query Frame = 0
BLAST of Carg18828 vs. NCBI nr
Match: XP_023000409.1 (late embryogenesis abundant protein 1 [Cucurbita maxima]) HSP 1 Score: 102.8 bits (255), Expect = 1.2e-18 Identity = 68/111 (61.26%), Postives = 68/111 (61.26%), Query Frame = 0
BLAST of Carg18828 vs. NCBI nr
Match: XP_023515217.1 (late embryogenesis abundant protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 101.7 bits (252), Expect = 2.6e-18 Identity = 67/111 (60.36%), Postives = 68/111 (61.26%), Query Frame = 0
BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A6J1HHY8 (late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464504 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19 Identity = 69/111 (62.16%), Postives = 69/111 (62.16%), Query Frame = 0
BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A6J1KJU5 (late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494669 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 5.7e-19 Identity = 68/111 (61.26%), Postives = 68/111 (61.26%), Query Frame = 0
BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A5D3CF20 (Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002210 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10 Identity = 53/96 (55.21%), Postives = 58/96 (60.42%), Query Frame = 0
BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A1S3CF46 (late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10 Identity = 53/96 (55.21%), Postives = 58/96 (60.42%), Query Frame = 0
BLAST of Carg18828 vs. ExPASy TrEMBL
Match: A0A6J1GQ03 (late embryogenesis abundant protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456481 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10 Identity = 52/99 (52.53%), Postives = 57/99 (57.58%), Query Frame = 0
BLAST of Carg18828 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related ) HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04 Identity = 38/113 (33.63%), Postives = 49/113 (43.36%), Query Frame = 0
BLAST of Carg18828 vs. TAIR 10
Match: AT1G15415.1 (The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol. ) HSP 1 Score: 41.2 bits (95), Expect = 4.0e-04 Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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