Carg18827 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18827
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Zinc finger protein
Location	Carg_Chr08: 3707693 .. 3708694 (+)
RNA-Seq Expression	Carg18827
Synteny	Carg18827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCACTCGCCTCCCTCTGCTTCACTTAGCACCGCCGTAAGAATCCCTGCTTAATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATGATTTGGTATAAATGGTGGGAATTTGAAGGTTGCCGGAGAAATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCATCTCAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGCGAATCCAGATTCCTGGCTGACCTTGGGCTCTTTGGCGGCGGCGGCGGCGGCAGTAGAGGAAGAAGCATTTCGTCCTCCTCCTCCTCCTCGTACGGTGGAGTTGCCTCCCCGGGCTCCGACGTCCGTCCTGGAGACTGGTACTGTGGCGTTGCCAACTGTGGAACCCACAACTTTGCGAACCGGTCGAGCTGCTTCGTATGCGGCGCGTTTAAGGATGAGTCAGCAGCGACGGCTGCCAGAGGTGGGTTTGATTTTGATGTGGCGCCACGTGGATCGAGGAGCTTTGGTTTTGGAAGCAATGGCTCACGTGGTGGGTCTTCTTGGAAGTCTGGTGACTGGATTTGTTCCAGGTCATTTCTTTTTTACCCTTTTTTTTTCTTTTGAATAATAGTTAATCTATTTAAAAGGTATAATATATTATAATTTACAATAATTTCTAAATCAGCTATCAAACACCCATTTTTAACCACGAAATAATAATTAATTAATTGTGTCGATGGGTCATTACAGGTCAGGATGCAACGTACATAACTTTGCGAGTAGAATGGAGTGTTTTCGATGCAATGCTCCCAGAGACTCGTTCTTCTGAAATATCGAATTTTCATCAAAATTTTCTATATTTTTCTTCGAATATAATAGTACATAGTTTAGTTCGTATCATTTTTCATTTGATTTTGATTGTAATCTCTCGAGTTAGAGTGATATTGAGTTGTATTTTAGCTTTTCTTAATCAATTTTATGGCAAGGAATTAATCTCCTTTTTAGAATAAAAAGTGTTTTTTCTCTACC

mRNA sequence

ATCACTCGCCTCCCTCTGCTTCACTTAGCACCGCCGTTGCCGGAGAAATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCATCTCAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGCGAATCCAGATTCCTGGCTGACCTTGGGCTCTTTGGCGGCGGCGGCGGCGGCAGTAGAGGAAGAAGCATTTCGTCCTCCTCCTCCTCCTCGTACGGTGGAGTTGCCTCCCCGGGCTCCGACGTCCGTCCTGGAGACTGGTACTGTGGCGTTGCCAACTGTGGAACCCACAACTTTGCGAACCGGTCGAGCTGCTTCGTATGCGGCGCGTTTAAGGATGAGTCAGCAGCGACGGCTGCCAGAGGTGGGTTTGATTTTGATGTGGCGCCACGTGGATCGAGGAGCTTTGGTTTTGGAAGCAATGGCTCACGTGGTGGGTCTTCTTGGAAGTCTGGTGACTGGATTTGTTCCAGGTCAGGATGCAACGTACATAACTTTGCGAGTAGAATGGAGTGTTTTCGATGCAATGCTCCCAGAGACTCGTTCTTCTGAAATATCGAATTTTCATCAAAATTTTCTATATTTTTCTTCGAATATAATAGTACATAGTTTAGTTCGTATCATTTTTCATTTGATTTTGATTGTAATCTCTCGAGTTAGAGTGATATTGAGTTGTATTTTAGCTTTTCTTAATCAATTTTATGGCAAGGAATTAATCTCCTTTTTAGAATAAAAAGTGTTTTTTCTCTACC

Coding sequence (CDS)

ATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCATCTCAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGCGAATCCAGATTCCTGGCTGACCTTGGGCTCTTTGGCGGCGGCGGCGGCGGCAGTAGAGGAAGAAGCATTTCGTCCTCCTCCTCCTCCTCGTACGGTGGAGTTGCCTCCCCGGGCTCCGACGTCCGTCCTGGAGACTGGTACTGTGGCGTTGCCAACTGTGGAACCCACAACTTTGCGAACCGGTCGAGCTGCTTCGTATGCGGCGCGTTTAAGGATGAGTCAGCAGCGACGGCTGCCAGAGGTGGGTTTGATTTTGATGTGGCGCCACGTGGATCGAGGAGCTTTGGTTTTGGAAGCAATGGCTCACGTGGTGGGTCTTCTTGGAAGTCTGGTGACTGGATTTGTTCCAGGTCAGGATGCAACGTACATAACTTTGCGAGTAGAATGGAGTGTTTTCGATGCAATGCTCCCAGAGACTCGTTCTTCTGA

Protein sequence

MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSRSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF

Homology

[Close]

BLAST of Carg18827 vs. NCBI nr
Match: XP_022964373.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >KAG7025771.1 hypothetical protein SDJN02_12269 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.4 bits (908), Expect = 5.5e-94
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
           VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR
Sbjct: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120

Query: 121 SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 170
           SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF
Sbjct: 121 SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 169

[Close]

BLAST of Carg18827 vs. NCBI nr
Match: KAG6593432.1 (hypothetical protein SDJN03_12908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354.4 bits (908), Expect = 5.5e-94
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG
Sbjct: 9   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 68

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
           VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR
Sbjct: 69  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 128

Query: 121 SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 170
           SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF
Sbjct: 129 SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 177

[Close]

BLAST of Carg18827 vs. NCBI nr
Match: XP_023514793.1 (uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.6 bits (893), Expect = 3.0e-92
Identity = 166/169 (98.22%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
           VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAA GGFDFDVAPRGSR
Sbjct: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAAGGGFDFDVAPRGSR 120

Query: 121 SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 170
           +FGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD FF
Sbjct: 121 TFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 169

[Close]

BLAST of Carg18827 vs. NCBI nr
Match: XP_023000400.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima])

HSP 1 Score: 330.5 bits (846), Expect = 8.6e-87
Identity = 162/174 (93.10%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSI-----SSSSS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLG+F   GGGSRGRSI     SSSSS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVF---GGGSRGRSISSSSSSSSSS 60

Query: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVA 120
           SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFD DVA
Sbjct: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVA 120

Query: 121 PRGSRSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 170
           PRGSRSFGFG+NGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD FF
Sbjct: 121 PRGSRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 171

[Close]

BLAST of Carg18827 vs. NCBI nr
Match: XP_038899251.1 (uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_038899252.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida])

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-71
Identity = 140/170 (82.35%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGE +  A+LG+FGG     RGR+I     SSYGG
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGELKLGAELGVFGG-----RGRAI----PSSYGG 60

Query: 61  VA-SPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGS 120
           VA SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA A  GGFDFDV  RGS
Sbjct: 61  VAYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAAAACGGGFDFDVTCRGS 120

Query: 121 RSFGFG-SNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
           RSFGFG SNG RGGSSW SGDWICSRSGCNVHNFASRMECFRCNAPRD F
Sbjct: 121 RSFGFGSSNGLRGGSSWMSGDWICSRSGCNVHNFASRMECFRCNAPRDLF 161

[Close]

BLAST of Carg18827 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 72/254 (28.35%), Postives = 83/254 (32.68%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRECCQRC------------GESRFLADLGLFGGGGGGSR---- 62
           RPGDWNC  C   NFQRR  C RC            G + F  D       G GS     
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  --GRSISSS----------------------SSSSYGGVASPGSDVRPGDWYCGVANCGT 122
             G S+  S                      SS S+GG        R GDW CG   CG 
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGG----NVPFRAGDWKCGSEGCGY 462

Query: 123 HNFANRSSCFVCGAFKDESAATA------ARGGFDFD----------------------- 168
           HNFA    C  CGA +  +A  A        G +  +                       
Sbjct: 463 HNFAKNVCCLRCGASRATAAVVADHASGPVNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQ 522

[Close]

BLAST of Carg18827 vs. ExPASy TrEMBL
Match: A0A6J1HKM2 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662 GN=LOC111464408 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.7e-94
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
           VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR
Sbjct: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120

Query: 121 SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 170
           SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF
Sbjct: 121 SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 169

[Close]

BLAST of Carg18827 vs. ExPASy TrEMBL
Match: A0A6J1KI84 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 GN=LOC111494659 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.1e-87
Identity = 162/174 (93.10%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSI-----SSSSS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLG+F   GGGSRGRSI     SSSSS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVF---GGGSRGRSISSSSSSSSSS 60

Query: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVA 120
           SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFD DVA
Sbjct: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVA 120

Query: 121 PRGSRSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 170
           PRGSRSFGFG+NGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD FF
Sbjct: 121 PRGSRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 171

[Close]

BLAST of Carg18827 vs. ExPASy TrEMBL
Match: A0A6J1DB61 (transcription initiation factor TFIID subunit 15-like OS=Momordica charantia OX=3673 GN=LOC111018697 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.7e-67
Identity = 133/169 (78.70%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDW+CRSCQHLNFQRRECCQRCG+S+F    G+F GGGGG R  +  SS  SSYGG
Sbjct: 1   MNRPGDWHCRSCQHLNFQRRECCQRCGDSKF----GVFAGGGGG-RLATGRSSVPSSYGG 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAA--TAARGGFDFDVAPRG 120
           VASPGSDVRPGDWYCGV NCGTHNFA+RSSCF CGAFKDESAA    A GGFDFD++ R 
Sbjct: 61  VASPGSDVRPGDWYCGVGNCGTHNFASRSSCFKCGAFKDESAAAGAGAGGGFDFDMS-RA 120

Query: 121 SRSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDS 168
           SR FGFG+N SR GSSWKSGDWIC+RSGCN HNFASRMECFRCN PRDS
Sbjct: 121 SRGFGFGTNASRAGSSWKSGDWICTRSGCNEHNFASRMECFRCNDPRDS 163

[Close]

BLAST of Carg18827 vs. ExPASy TrEMBL
Match: A0A0A0K718 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433230 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.7e-61
Identity = 130/176 (73.86%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGE         F  GGG   G   S S  SSYGG
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGE---------FKLGGGPELGVFSSRSGRSSYGG 60

Query: 61  VA--SPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAAR---GGFDFDVA 120
               SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA+A     GGFDFD  
Sbjct: 61  GVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGGGFDFDAT 120

Query: 121 PRGSRSFGFGSNG--SRGGSS-WKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
            R  RSFGFGS+   SRG SS W SGDWICSRSGCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 CRAFRSFGFGSSNATSRGASSPWLSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 167

[Close]

BLAST of Carg18827 vs. ExPASy TrEMBL
Match: A0A5D3CJI6 (Transcription initiation factor TFIID subunit 15b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002200 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.8e-59
Identity = 127/178 (71.35%), Postives = 132/178 (74.16%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLA--DLGLFGGGGGGSRGRSISSSSSSSY 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGE +     +LG+F G  G           SSSY
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAG----------RSSSY 60

Query: 61  GG--VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATA-----ARGGFD 120
           GG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA+A       GGFD
Sbjct: 61  GGGIAYSPGSDVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGFD 120

Query: 121 FDVAPRGSRSFGFGSNGSRGG-SSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
           FDV  R  RSFG  S  SRG  S W SGDWICSR GCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 FDVTCRAFRSFGNAS--SRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 166

[Close]

BLAST of Carg18827 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 4.9e-48
Identity = 102/170 (60.00%), Postives = 114/170 (67.06%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           M+RPGDWNCRSC HLNFQRR+ CQRCG+SR         GG GG    +    + S++G 
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSR------SGPGGVGGLDFGNFGGRAMSAFG- 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFD----FDVAP 120
             + GSDVRPGDWYC V NCGTHNFA+RS+CF CG FKDE+ A    GG      FD   
Sbjct: 61  -FTTGSDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADI 120

Query: 121 RGSRSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 167
             SR  G G     G SSWKSGDWIC+R GCN HNFASRMECFRCNAPRD
Sbjct: 121 MRSRVPGNG-----GRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157

[Close]

BLAST of Carg18827 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 185.7 bits (470), Expect = 3.2e-47
Identity = 104/173 (60.12%), Postives = 116/173 (67.05%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCR C HLNFQRR+ CQRC E R     G+      G  GR +    SSS+G 
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPR---PGGISTDLLSGFGGRPV----SSSFG- 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDE---SAATAARGGFDFDVAPR 120
             + G DVRPGDWYC + +CGTHNFANRSSCF CGA KDE   S+A A  G  D +V PR
Sbjct: 61  -FNTGPDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPR 120

Query: 121 GSRSFGFGSNGSRGG----SSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 167
               FGFG + S GG    S WKSGDWIC RSGCN HNFASR ECFRCNAP++
Sbjct: 121 RG-LFGFGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of Carg18827 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-27
Identity = 64/162 (39.51%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 5   GDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGGVASP 64
           GDW C +CQH NF++RE CQ+CG  +F           GG         S+  Y      
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKF-----------GG------VDVSTYLYN----- 65

Query: 65  GSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSRSFGF 124
            ++V  GDWYCG  NCG+HN+A+R+SC+ CG  K E           +     G++   +
Sbjct: 66  RTEVMAGDWYCGALNCGSHNYASRTSCYRCGMIKVE-----------YTEQYYGAQMVAY 125

Query: 125 GSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 167
           G++G+     WK+GDW+C R GC VHN+ASR ECF+C   RD
Sbjct: 126 GNDGAACPPGWKTGDWVCPRVGCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Carg18827 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-09
Identity = 57/214 (26.64%), Postives = 79/214 (36.92%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGG-------------SRGRS 62
           R GDW C  C + N+  RE C++CG+S+ +A L      G               S  + 
Sbjct: 48  RIGDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQP 107

Query: 63  ISSSSSSSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCG-------------- 122
            S  + S+    AS   + R GDW C    CG HN+++R  C  C               
Sbjct: 108 GSLLAFSNATNQASVHKEWRSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGTKRLAS 167

Query: 123 -----------------AFKDESAATAARGGFDFDVAPRGSRSFGFGSNGS------RGG 167
                            + + +SA  A+  G              F    S       G 
Sbjct: 168 EALAHEWDSKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGV 227

The following BLAST results are available for this feature:

BLAST of Carg18827 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964373.1	5.5e-94	100.00	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >KAG7025...	[more]
KAG6593432.1	5.5e-94	100.00	hypothetical protein SDJN03_12908, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023514793.1	3.0e-92	98.22	uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Cucurbita pepo su...	[more]
XP_023000400.1	8.6e-87	93.10	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]	[more]
XP_038899251.1	1.3e-71	82.35	uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_03889...	[more]

BLAST of Carg18827 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	1.5e-09	28.35	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of Carg18827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKM2	2.7e-94	100.00	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KI84	4.1e-87	93.10	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1DB61	3.7e-67	78.70	transcription initiation factor TFIID subunit 15-like OS=Momordica charantia OX=...	[more]
A0A0A0K718	6.7e-61	73.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433230 PE=4 SV=1	[more]
A0A5D3CJI6	4.8e-59	71.35	Transcription initiation factor TFIID subunit 15b-like OS=Cucumis melo var. maku...	[more]

BLAST of Carg18827 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	4.9e-48	60.00	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	3.2e-47	60.12	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	1.3e-27	39.51	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	3.4e-09	26.64	zinc finger (Ran-binding) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 138..164 e-value: 8.5E-8 score: 41.9 coord: 5..29 e-value: 0.0055 score: 25.9 coord: 71..97 e-value: 1.6E-4 score: 31.0
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 69..96 e-value: 7.5E-6 score: 25.2 coord: 136..165 e-value: 1.4E-10 score: 40.3
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 140..161
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 73..94
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 69..100 score: 9.879186
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 136..167 score: 10.884192
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 8.896765
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..31 e-value: 1.1E-7 score: 33.0 coord: 129..167 e-value: 4.7E-13 score: 50.2 coord: 63..101 e-value: 1.7E-11 score: 45.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..65
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..167
None	No IPR available	PANTHER	PTHR23111:SF74	OS02G0203700 PROTEIN	coord: 1..167
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 129..167
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 62..101
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18827-RA	Carg18827-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0044267	cellular protein metabolic process
cellular_component	GO:0140513	nuclear protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003723	RNA binding