Carg18826 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18826
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	zinc finger CCCH domain-containing protein 39-like
Location	Carg_Chr08: 3709707 .. 3711762 (+)
RNA-Seq Expression	Carg18826
Synteny	Carg18826

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTCTCCGCTGTGGTTTCCGATCAACGCCTAGGGTTTAACTCTGTAAATATTGTACAAATGTCTCTTATACCTGTCAATTAATTGGATGTATCATTTGCCATTTCAAATTTCATCGATTTCTTCAAAACTTGTGGACTTGGGGCTTGGTGTCTCTTCTGGAAGTTTTGGACAGTTCTTCATCAGGTATCTCTCTGAGTTTTCCATTCTTTTGCGCCAAATTTGGACTCCTCAACTTTAGCTGCATGTGTCAATTTTTTATTCGCTTCCGATTTGAAGATATTGACAATGTACAGAGATTTAAGCGATTTGTCTATTGTTACTTTTGGAAAAGAAATGTTGCTTAGAACCTACTGTTTTTATCAGTTCAAAGAATTTGAAACTTGAAATTGGATGGTTTGGCCCTTGAAATGAGTGATCCTTATCCTTTTCACCAAGTTACTCCTCCAGACCATGAGGCTCGTGGCGTTTGGCCGCCATTGCGTCCTCCGCCATTGCCTCCTCGATATACTGTTGGTCGATTCCCATCATTTTATCAGCCTACGATGTCGGAAATTGTACCGAGTAGGGTAATGCCTTCAAATTTTGAGATTCCACAATGGAACAATGTGCACATTGGATTACATGACAATGAGTTGGAGTGGAGATATGCACTTGCTTCTAATGATCATACTCGTGGATGGTTACCTTCTTGGCGAGGAATTGAATTCCATGAAAATCGATTACCAGCGTGTCCGATTGTTAACAGTCGGACTGGAATGTCGACTGAAATGAAAGTTTGCAGACAATTCCAACGTAGGGGGAAATGTGCATATGGTGATCAGTGTCGTTTCCTTCATAAAATTCCTGAGAACACTAAGGATTTTGGCTCCTCCAGCCAGAACCATGAGGTTAGAGCAGTAGCTTCTGGTCATGTTATGGATGGAAAAAGTATGTTTGATCAATTTGAAGAAGTCAGATCAAAAGTACAAACGAAAATTGTTGCCCGCAGTGAGATTCCAATGCCTGTAAATTGCAAAACAAGGCTCTGTTACCTCTGGCAGACAACTGGTCACTGCTCATATGGGGAGGTTTGTCGCTTCGCTCATGGAGAAGCAGGTATTTACAGCCTTTGAGTCTACTAATCTCTTTCGTTTCCAGTACCATGTCATATGCTTTCAAGTGATTTATCTATTTTCTTTTCCCATTTTCTTATCCATGCAAGTTATTTCATAAATTACTTAAACTTTTTGGGATAAATAACCTGCCTTGATTCAAATGAATCCTCTTTCCTTTTGAGTTTTAATAACGAGGTGAGAGATTCGAATGTTTGACCGCTTGGTAAAGAATATATGCCTTAAACCTTAGCCTTTTTGTTGGGTGATTAACTTTTGTAGGGGGAAGGGGTTCTATTTGCATAATGAAAATGGTGGGCTATATAGACTTTGAGACCTTTCTAAGCATAGGTTAGATATTGTTCCTCAGAACATGGAAACATCAAACGTTGATTACTTAACCATACATATAAATGAACATTCTAACACTGTAAGATGCAATGTCAACCATGTGGATATACTCATTCATAAATGGTGATTGACGTGTTCATGAAATCAAAACCTGGTTATTGCCAAACTACATGCATTGATATTGCCCTTGTCTTCTTTGTTTTGGGGGGAAAATAGAATTACAGAAGCTCGAGTCGTGCAGTACATCAGAACGTGGCAGAGTAGGTGGAGCCTCTGCAACAACGAAAGCTGCTGCCGCGGCTGGATTAAGGTGCAGCAGAGGAATTGGAACCGACTGTAAGAATAAAGGATCATCAAGAATGAAGCAACTCTTTAAATCAAAGGAGCATAAGAAGTTGATTGGCATTTACGCTGACTGGCTTGAGAATTGAGTATTCTGCATGACTTGCAGTACAAAGATTTGACCAAATACTACTGGGGCGTGTTCCAATTCTCACAAGTGGCTGAGAACATTAAGGTTCTTCTAGAACCCCCCAAGTGCATTTTGACATTTAAATGAATATAGGAAAATAGATATTGTTCTTAACAAGAATATGATTTTTTTTTTTTTT

mRNA sequence

ATCTTCTCCGCTGTGGTTTCCGATCAACGCCTAGGGTTTAACTCTGTAAATATTGTACAAATGTCTCTTATACCTGTCAATTAATTGGATGTATCATTTGCCATTTCAAATTTCATCGATTTCTTCAAAACTTGTGGACTTGGGGCTTGGTGTCTCTTCTGGAAGTTTTGGACAGTTCTTCATCAGGTATCTCTCTGAGTTTTCCATTCTTTTGCGCCAAATTTGGACTCCTCAACTTTAGCTGCATGTGTCAATTTTTTATTCGCTTCCGATTTGAAGATATTGACAATGTACAGAGATTTAAGCGATTTGTCTATTGTTACTTTTGGAAAAGAAATGTTGCTTAGAACCTACTGTTTTTATCAGTTCAAAGAATTTGAAACTTGAAATTGGATGGTTTGGCCCTTGAAATGAGTGATCCTTATCCTTTTCACCAAGTTACTCCTCCAGACCATGAGGCTCGTGGCGTTTGGCCGCCATTGCGTCCTCCGCCATTGCCTCCTCGATATACTGTTGGTCGATTCCCATCATTTTATCAGCCTACGATGTCGGAAATTGTACCGAGTAGGGTAATGCCTTCAAATTTTGAGATTCCACAATGGAACAATGTGCACATTGGATTACATGACAATGAGTTGGAGTGGAGATATGCACTTGCTTCTAATGATCATACTCGTGGATGGTTACCTTCTTGGCGAGGAATTGAATTCCATGAAAATCGATTACCAGCGTGTCCGATTGTTAACAGTCGGACTGGAATGTCGACTGAAATGAAAGTTTGCAGACAATTCCAACGTAGGGGGAAATGTGCATATGGTGATCAGTGTCGTTTCCTTCATAAAATTCCTGAGAACACTAAGGATTTTGGCTCCTCCAGCCAGAACCATGAGGTTAGAGCAGTAGCTTCTGGTCATGTTATGGATGGAAAAAGTATGTTTGATCAATTTGAAGAAGTCAGATCAAAAGTACAAACGAAAATTGTTGCCCGCAGTGAGATTCCAATGCCTGTAAATTGCAAAACAAGGCTCTGTTACCTCTGGCAGACAACTGGTCACTGCTCATATGGGGAGGTTTGTCGCTTCGCTCATGGAGAAGCAGAATTACAGAAGCTCGAGTCGTGCAGTACATCAGAACGTGGCAGAGTAGGTGGAGCCTCTGCAACAACGAAAGCTGCTGCCGCGGCTGGATTAAGGTGCAGCAGAGGAATTGGAACCGACTGTAAGAATAAAGGATCATCAAGAATGAAGCAACTCTTTAAATCAAAGGAGCATAAGAAGTTGATTGGCATTTACGCTGACTGGCTTGAGAATTGAGTATTCTGCATGACTTGCAGTACAAAGATTTGACCAAATACTACTGGGGCGTGTTCCAATTCTCACAAGTGGCTGAGAACATTAAGGTTCTTCTAGAACCCCCCAAGTGCATTTTGACATTTAAATGAATATAGGAAAATAGATATTGTTCTTAACAAGAATATGATTTTTTTTTTTTTT

Coding sequence (CDS)

ATGAGTGATCCTTATCCTTTTCACCAAGTTACTCCTCCAGACCATGAGGCTCGTGGCGTTTGGCCGCCATTGCGTCCTCCGCCATTGCCTCCTCGATATACTGTTGGTCGATTCCCATCATTTTATCAGCCTACGATGTCGGAAATTGTACCGAGTAGGGTAATGCCTTCAAATTTTGAGATTCCACAATGGAACAATGTGCACATTGGATTACATGACAATGAGTTGGAGTGGAGATATGCACTTGCTTCTAATGATCATACTCGTGGATGGTTACCTTCTTGGCGAGGAATTGAATTCCATGAAAATCGATTACCAGCGTGTCCGATTGTTAACAGTCGGACTGGAATGTCGACTGAAATGAAAGTTTGCAGACAATTCCAACGTAGGGGGAAATGTGCATATGGTGATCAGTGTCGTTTCCTTCATAAAATTCCTGAGAACACTAAGGATTTTGGCTCCTCCAGCCAGAACCATGAGGTTAGAGCAGTAGCTTCTGGTCATGTTATGGATGGAAAAAGTATGTTTGATCAATTTGAAGAAGTCAGATCAAAAGTACAAACGAAAATTGTTGCCCGCAGTGAGATTCCAATGCCTGTAAATTGCAAAACAAGGCTCTGTTACCTCTGGCAGACAACTGGTCACTGCTCATATGGGGAGGTTTGTCGCTTCGCTCATGGAGAAGCAGAATTACAGAAGCTCGAGTCGTGCAGTACATCAGAACGTGGCAGAGTAGGTGGAGCCTCTGCAACAACGAAAGCTGCTGCCGCGGCTGGATTAAGGTGCAGCAGAGGAATTGGAACCGACTGTAAGAATAAAGGATCATCAAGAATGAAGCAACTCTTTAAATCAAAGGAGCATAAGAAGTTGATTGGCATTTACGCTGACTGGCTTGAGAATTGA

Protein sequence

MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFEIPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTSERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN

Homology

[Close]

BLAST of Carg18826 vs. NCBI nr
Match: KAG7025772.1 (Zinc finger CCCH domain-containing protein 39 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 634.0 bits (1634), Expect = 6.4e-178
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60
           MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120
           IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240
           EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS
Sbjct: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300
           ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300

[Close]

BLAST of Carg18826 vs. NCBI nr
Match: XP_022964047.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata])

HSP 1 Score: 632.1 bits (1629), Expect = 2.4e-177
Identity = 299/300 (99.67%), Postives = 299/300 (99.67%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60
           MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120
           IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLP CPIVNSRTGMSTE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240
           EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS
Sbjct: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300
           ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300

[Close]

BLAST of Carg18826 vs. NCBI nr
Match: KAG6593433.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 631.7 bits (1628), Expect = 3.2e-177
Identity = 298/300 (99.33%), Postives = 299/300 (99.67%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60
           MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120
           IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLP CPIVNSRTGMSTE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHE+RAVASGHVMDGKSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEIRAVASGHVMDGKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240
           EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS
Sbjct: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300
           ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300

[Close]

BLAST of Carg18826 vs. NCBI nr
Match: XP_023513806.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 602.4 bits (1552), Expect = 2.1e-168
Identity = 285/300 (95.00%), Postives = 292/300 (97.33%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60
           MSDPYPFHQVTPPDHEARGVW     PPLPPRYTVGRFPSFY+PTMSE+VPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVW-----PPLPPRYTVGRFPSFYRPTMSEVVPSRVMPSNFE 60

Query: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120
           IPQWNNV+IGLHDNELEWRYALASNDHTRGWLPSWRGI+FHENRLP CPI+N+RTGMSTE
Sbjct: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIDFHENRLPECPILNNRTGMSTE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFG S+QNHEVRAVASGHVMDGKSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240
           EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCS S
Sbjct: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSAS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300
           ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 295

[Close]

BLAST of Carg18826 vs. NCBI nr
Match: XP_023000378.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 600.1 bits (1546), Expect = 1.0e-167
Identity = 286/301 (95.02%), Postives = 293/301 (97.34%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60
           MSDPYPFHQVTP DHEARGVWPPLRPPP PPRY++GRFPSFYQPTMSE+VPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPSDHEARGVWPPLRPPPWPPRYSIGRFPSFYQPTMSEVVPSRVMPSNFE 60

Query: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120
           IPQWNNV+IGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLP CPIVNSRTGM+TE
Sbjct: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMATE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFG SSQNHEVRAVASGHVMD KSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGYSSQNHEVRAVASGHVMDRKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240
           EVRSKVQTKIVARSEIP+PV+CKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCS S
Sbjct: 181 EVRSKVQTKIVARSEIPVPVSCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSPS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEH-KKLIGIYADWLE 300
           ERGRVGGASATTKAAAAAGLRCSRGIGTD KNKGSSRMKQLFKSKEH KKLIGIYADWLE
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDGKNKGSSRMKQLFKSKEHKKKLIGIYADWLE 300

[Close]

BLAST of Carg18826 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-12
Identity = 66/229 (28.82%), Postives = 98/229 (42.79%), Query Frame = 0


Query: 99  EFHENRLPACPIVNSR----TGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGS 158
           E    R    P+VN+       +   MK+CR+F    +C YGD+C F+H   E+   F  
Sbjct: 160 ERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIH---EDLSKFRE 219

Query: 159 SSQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMP-----------VNCK 218
            S      +V S     G +  DQ  +  S +  ++  +  IP+P           V  K
Sbjct: 220 DSGKLRESSVIS----VGATAADQPSDTASNL-IEVNRQGSIPVPAPMNNGGVVKTVYWK 279

Query: 219 TRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTSERGRVGGAS----------ATTK 278
           TRLC  +  TG C +G+ C FAHG+AEL        +  GRV G +          A   
Sbjct: 280 TRLCMKFDITGQCPFGDKCHFAHGQAELH-------NSVGRVEGEAMNAVASVNKQAVVP 339

Query: 279 AAAAAGLRCSRGIGTDCK--NKGSSRMKQLFKSKEHKKLIGIYADWLEN 301
           A  A  ++    +  D    N+   R K L K  + KK+  IY DW+++
Sbjct: 340 ANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDD 373

[Close]

BLAST of Carg18826 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-10
Identity = 44/179 (24.58%), Postives = 75/179 (41.90%), Query Frame = 0


Query: 78  WRYALASNDHTRG---WLPSWRGIEF--HENRLPACPIVNSRTGMSTEMKVCRQFQRRGK 137
           W+  +A+++  R      P+   +E    E ++P+     + +G S + + C++F     
Sbjct: 127 WQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEG 186

Query: 138 CAYGDQCRFLHKIPENTKD-----FGSSSQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQ 197
           C YG+ C FLH      ++      G           + G  + G         +     
Sbjct: 187 CPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGG 246

Query: 198 TKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTSERGRVG 247
           +   +  +I  P N KTR+C  W+ TG+C +G  C FAHG AEL +       E G+ G
Sbjct: 247 SGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDG 305

[Close]

BLAST of Carg18826 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.0e-10
Identity = 54/210 (25.71%), Postives = 84/210 (40.00%), Query Frame = 0


Query: 115 TGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKS 174
           +G + + + C++F     C YGD C FLH            S+  E  A++    + G  
Sbjct: 166 SGRAYKGRHCKKFYTDEGCPYGDACTFLH---------DEQSKARESVAISLSPSVGGGG 225

Query: 175 MFDQFEEVRSKVQTKIVARSEIPM--PVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQ 234
               +    +   +   A    PM  P N KTR+C  W+ TG+C +G  C FAHG AEL 
Sbjct: 226 GGGSYNSAAAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELH 285

Query: 235 KL-----------ESCSTSERGRVGGASATTKAAAAA------------GLRCSRGIGTD 294
           K             + +   +  V  A A  + AAA+            G++  R   T 
Sbjct: 286 KYGGGLVDIDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQR--STI 345

Query: 295 CKNKGSSRMKQLFKSKEHKKLIGIYADWLE 300
              +     + + K K   K+  IY DW++
Sbjct: 346 AGQRSGQVQRPIQKWKGPDKISRIYGDWID 364

[Close]

BLAST of Carg18826 vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-07
Identity = 60/248 (24.19%), Postives = 96/248 (38.71%), Query Frame = 0


Query: 85  NDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTEM-------KVCRQFQRRGKCAY-G 144
           +D++R W  +  G E         P   +R+  S+E+       K+C +F R G C Y  
Sbjct: 39  DDYSRVWAINSDGAE--------SPSKKTRSSSSSEIGKSFFKTKLCFKF-RAGTCPYSA 98

Query: 145 DQCRFLHKI----------PENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFEEVRSKV 204
             C F H            P   +    +S+N E  AV+ G               R  V
Sbjct: 99  SSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLG--------------PRGNV 158

Query: 205 QTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKL------------ 264
              + +        N KTR+C  WQTTG+C +G  C FAHG +EL               
Sbjct: 159 AQTLKS-------PNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIG 218

Query: 265 --ESCSTSERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIG 301
              +  T +RG+V     T  +  + G+   R      +     R ++ +K  +  K+  
Sbjct: 219 TSATLDTKQRGQVD----TVTSLVSPGVSSQRTSSAVTQKPNGVRTQRKWKGPD--KISR 250

[Close]

BLAST of Carg18826 vs. ExPASy Swiss-Prot
Match: Q69XQ3 (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0618100 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-06
Identity = 35/124 (28.23%), Postives = 52/124 (41.94%), Query Frame = 0


Query: 112 NSRTGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVAS--GHV 171
           +S+ G+ +++K C +F     C +G  C FLH  P   +   +   +H   AVA+  G +
Sbjct: 26  SSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQ-AAAKMTSHGGTAVAAPPGRM 85

Query: 172 MDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEA 231
             G                        P   + KTR+C  + T   C +G  C FAHGE 
Sbjct: 86  PLGP------------------GAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGER 130

Query: 232 ELQK 234
           EL K
Sbjct: 146 ELGK 130

[Close]

BLAST of Carg18826 vs. ExPASy TrEMBL
Match: A0A6J1HGS0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111464190 PE=4 SV=1)

HSP 1 Score: 632.1 bits (1629), Expect = 1.2e-177
Identity = 299/300 (99.67%), Postives = 299/300 (99.67%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60
           MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120
           IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLP CPIVNSRTGMSTE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240
           EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS
Sbjct: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300
           ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300

[Close]

BLAST of Carg18826 vs. ExPASy TrEMBL
Match: A0A6J1KMG0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111494633 PE=4 SV=1)

HSP 1 Score: 600.1 bits (1546), Expect = 5.0e-168
Identity = 286/301 (95.02%), Postives = 293/301 (97.34%), Query Frame = 0


Query: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60
           MSDPYPFHQVTP DHEARGVWPPLRPPP PPRY++GRFPSFYQPTMSE+VPSRVMPSNFE
Sbjct: 1   MSDPYPFHQVTPSDHEARGVWPPLRPPPWPPRYSIGRFPSFYQPTMSEVVPSRVMPSNFE 60

Query: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120
           IPQWNNV+IGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLP CPIVNSRTGM+TE
Sbjct: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMATE 120

Query: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFE 180
           MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFG SSQNHEVRAVASGHVMD KSMFDQFE
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGYSSQNHEVRAVASGHVMDRKSMFDQFE 180

Query: 181 EVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTS 240
           EVRSKVQTKIVARSEIP+PV+CKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCS S
Sbjct: 181 EVRSKVQTKIVARSEIPVPVSCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSPS 240

Query: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEH-KKLIGIYADWLE 300
           ERGRVGGASATTKAAAAAGLRCSRGIGTD KNKGSSRMKQLFKSKEH KKLIGIYADWLE
Sbjct: 241 ERGRVGGASATTKAAAAAGLRCSRGIGTDGKNKGSSRMKQLFKSKEHKKKLIGIYADWLE 300

[Close]

BLAST of Carg18826 vs. ExPASy TrEMBL
Match: A0A0A0KBW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433210 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 4.0e-85
Identity = 183/287 (63.76%), Postives = 204/287 (71.08%), Query Frame = 0


Query: 16  EARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFEIPQWNNVHIGLHDNE 75
           EARG W PL PPP P      R  SFY+PTMS +V S  MPSNF IP WNN +IG +++E
Sbjct: 10  EARGNW-PLLPPPYPD----PRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIG-YEHE 69

Query: 76  LEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTEMKVCRQFQRRGKCAY 135
               Y    ND TR  LPS  GIEF E +L     V++    S EMKVCR FQRR KCAY
Sbjct: 70  FGRSYTPGFND-TRRMLPSGPGIEFREGQLSERWNVDN----SNEMKVCRLFQRRKKCAY 129

Query: 136 GDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSE 195
           GDQCRFLH+IP+ T+D GSSSQN+EV  VA GHVMD  S FDQ EEVRSKVQTK+V R E
Sbjct: 130 GDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGE 189

Query: 196 IPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTSERGRVGGAS--ATTK 255
           IP P+  K+R CY WQTTG C YG  CRFAHGEAELQKLE C+ S+RG VGG S  ATT 
Sbjct: 190 IPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTT 249

Query: 256 AAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 301
           AA  AGLR SR IGTDCKNKG  R+ Q F+SKE KKLIGIYADWLE+
Sbjct: 250 AAVEAGLRSSREIGTDCKNKG-PRINQFFESKESKKLIGIYADWLED 284

[Close]

BLAST of Carg18826 vs. ExPASy TrEMBL
Match: A0A1S4E329 (zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103499783 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 2.1e-78
Identity = 177/287 (61.67%), Postives = 196/287 (68.29%), Query Frame = 0


Query: 16  EARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFEIPQWNNVHIGLHDNE 75
           EARG W PL PPP P      R  SFY+ TMS  V S  MPSNF IP WNN +IG +++E
Sbjct: 10  EARGNW-PLLPPPYPD----PRNQSFYRSTMSGAVSSWRMPSNFGIPPWNNWNIG-YEHE 69

Query: 76  LEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTEMKVCRQFQRRGKCAY 135
           L   Y    ND T   LPS  GIEFHE +L     V+     S EMKVCR FQRR KCAY
Sbjct: 70  LGRSYRPGFND-THRMLPSRPGIEFHEGQLSERWNVDD----SNEMKVCRLFQRRKKCAY 129

Query: 136 GDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSE 195
           GDQCRFLH+IPE T+D GSSSQN+EVR          +S FDQ EEVRSKVQTK+V R E
Sbjct: 130 GDQCRFLHEIPEKTRDSGSSSQNYEVR----------RSGFDQLEEVRSKVQTKVVVRGE 189

Query: 196 IPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTSERGRVGG--ASATTK 255
           IP P+  K R CY WQTTG C YG  CRFAHGEAELQKLE CS S+RG VGG  A+ATT 
Sbjct: 190 IPKPLIGKPRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCSASQRGSVGGVSATATTT 249

Query: 256 AAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 301
           A   AGLR S+ IGTDCKNKG  R+ Q F+SKE KKLIGIYADWLE+
Sbjct: 250 APVEAGLRSSKEIGTDCKNKG-PRINQFFESKESKKLIGIYADWLED 274

[Close]

BLAST of Carg18826 vs. ExPASy TrEMBL
Match: A0A5A7UUP3 (Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002180 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 2.1e-78
Identity = 177/287 (61.67%), Postives = 196/287 (68.29%), Query Frame = 0


Query: 16  EARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFEIPQWNNVHIGLHDNE 75
           EARG W PL PPP P      R  SFY+ TMS  V S  MPSNF IP WNN +IG +++E
Sbjct: 10  EARGNW-PLLPPPYPD----PRNQSFYRSTMSGAVSSWRMPSNFGIPPWNNWNIG-YEHE 69

Query: 76  LEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTEMKVCRQFQRRGKCAY 135
           L   Y    ND T   LPS  GIEFHE +L     V+     S EMKVCR FQRR KCAY
Sbjct: 70  LGRSYRPGFND-THRMLPSRPGIEFHEGQLSERWNVDD----SNEMKVCRLFQRRKKCAY 129

Query: 136 GDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSE 195
           GDQCRFLH+IPE T+D GSSSQN+EVR          +S FDQ EEVRSKVQTK+V R E
Sbjct: 130 GDQCRFLHEIPEKTRDSGSSSQNYEVR----------RSGFDQLEEVRSKVQTKVVVRGE 189

Query: 196 IPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTSERGRVGG--ASATTK 255
           IP P+  K R CY WQTTG C YG  CRFAHGEAELQKLE CS S+RG VGG  A+ATT 
Sbjct: 190 IPKPLIGKPRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCSASQRGSVGGVSATATTT 249

Query: 256 AAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 301
           A   AGLR S+ IGTDCKNKG  R+ Q F+SKE KKLIGIYADWLE+
Sbjct: 250 APVEAGLRSSKEIGTDCKNKG-PRINQFFESKESKKLIGIYADWLED 274

[Close]

BLAST of Carg18826 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-13
Identity = 66/229 (28.82%), Postives = 98/229 (42.79%), Query Frame = 0


Query: 99  EFHENRLPACPIVNSR----TGMSTEMKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGS 158
           E    R    P+VN+       +   MK+CR+F    +C YGD+C F+H   E+   F  
Sbjct: 160 ERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIH---EDLSKFRE 219

Query: 159 SSQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMP-----------VNCK 218
            S      +V S     G +  DQ  +  S +  ++  +  IP+P           V  K
Sbjct: 220 DSGKLRESSVIS----VGATAADQPSDTASNL-IEVNRQGSIPVPAPMNNGGVVKTVYWK 279

Query: 219 TRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTSERGRVGGAS----------ATTK 278
           TRLC  +  TG C +G+ C FAHG+AEL        +  GRV G +          A   
Sbjct: 280 TRLCMKFDITGQCPFGDKCHFAHGQAELH-------NSVGRVEGEAMNAVASVNKQAVVP 339

Query: 279 AAAAAGLRCSRGIGTDCK--NKGSSRMKQLFKSKEHKKLIGIYADWLEN 301
           A  A  ++    +  D    N+   R K L K  + KK+  IY DW+++
Sbjct: 340 ANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDD 373

[Close]

BLAST of Carg18826 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-11
Identity = 44/179 (24.58%), Postives = 75/179 (41.90%), Query Frame = 0


Query: 78  WRYALASNDHTRG---WLPSWRGIEF--HENRLPACPIVNSRTGMSTEMKVCRQFQRRGK 137
           W+  +A+++  R      P+   +E    E ++P+     + +G S + + C++F     
Sbjct: 127 WQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEG 186

Query: 138 CAYGDQCRFLHKIPENTKD-----FGSSSQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQ 197
           C YG+ C FLH      ++      G           + G  + G         +     
Sbjct: 187 CPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGG 246

Query: 198 TKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTSERGRVG 247
           +   +  +I  P N KTR+C  W+ TG+C +G  C FAHG AEL +       E G+ G
Sbjct: 247 SGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDG 305

[Close]

BLAST of Carg18826 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-08
Identity = 60/248 (24.19%), Postives = 96/248 (38.71%), Query Frame = 0


Query: 85  NDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTEM-------KVCRQFQRRGKCAY-G 144
           +D++R W  +  G E         P   +R+  S+E+       K+C +F R G C Y  
Sbjct: 39  DDYSRVWAINSDGAE--------SPSKKTRSSSSSEIGKSFFKTKLCFKF-RAGTCPYSA 98

Query: 145 DQCRFLHKI----------PENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFEEVRSKV 204
             C F H            P   +    +S+N E  AV+ G               R  V
Sbjct: 99  SSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLG--------------PRGNV 158

Query: 205 QTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKL------------ 264
              + +        N KTR+C  WQTTG+C +G  C FAHG +EL               
Sbjct: 159 AQTLKS-------PNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIG 218

Query: 265 --ESCSTSERGRVGGASATTKAAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIG 301
              +  T +RG+V     T  +  + G+   R      +     R ++ +K  +  K+  
Sbjct: 219 TSATLDTKQRGQVD----TVTSLVSPGVSSQRTSSAVTQKPNGVRTQRKWKGPD--KISR 250

[Close]

BLAST of Carg18826 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 46.2 bits (108), Expect = 5.3e-05
Identity = 26/73 (35.62%), Postives = 35/73 (47.95%), Query Frame = 0


Query: 160 EVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYG 219
           +V      +V  G    DQ EE+  +V  + +           KT LC  WQ TG C YG
Sbjct: 191 QVSTTQKVYVRGGGKKEDQEEEIEVEVYNQGMT----------KTELCNKWQETGTCPYG 250

Query: 220 EVCRFAHGEAELQ 233
           + C+FAHG  EL+
Sbjct: 251 DHCQFAHGIKELR 253

[Close]

BLAST of Carg18826 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 45.8 bits (107), Expect = 7.0e-05
Identity = 25/65 (38.46%), Postives = 33/65 (50.77%), Query Frame = 0


Query: 168 HVMDGKSMFDQFEEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHG 227
           +V  G    DQ EE+  +V  + +           KT LC  WQ TG C YG+ C+FAHG
Sbjct: 198 YVRGGGKKEDQEEEIEVEVYNQGMT----------KTELCNKWQETGTCPYGDHCQFAHG 252

Query: 228 EAELQ 233
             EL+
Sbjct: 258 IKELR 252

The following BLAST results are available for this feature:

BLAST of Carg18826 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025772.1	6.4e-178	100.00	Zinc finger CCCH domain-containing protein 39 [Cucurbita argyrosperma subsp. arg...	[more]
XP_022964047.1	2.4e-177	99.67	zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata]	[more]
KAG6593433.1	3.2e-177	99.33	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]
XP_023513806.1	2.1e-168	95.00	zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000378.1	1.0e-167	95.02	zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima]	[more]

BLAST of Carg18826 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT81	3.4e-12	28.82	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LQM3	2.4e-10	24.58	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q84UQ3	7.0e-10	25.71	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
Q5PP65	4.3e-07	24.19	Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q69XQ3	3.6e-06	28.23	Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Carg18826 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGS0	1.2e-177	99.67	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1KMG0	5.0e-168	95.02	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A0A0KBW4	4.0e-85	63.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433210 PE=4 SV=1	[more]
A0A1S4E329	2.1e-78	61.67	zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5A7UUP3	2.1e-78	61.67	Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa O...	[more]

BLAST of Carg18826 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19360.1	2.4e-13	28.82	Zinc finger (CCCH-type) family protein	[more]
AT1G32360.1	1.7e-11	24.58	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	3.0e-08	24.19	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	5.3e-05	35.62	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.2	7.0e-05	38.46	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 118..145 e-value: 6.7E-6 score: 35.6 coord: 201..228 e-value: 3.3E-6 score: 36.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 203..228 e-value: 2.0E-8 score: 34.0 coord: 122..143 e-value: 1.1E-7 score: 31.5
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 118..146 score: 15.562998
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 201..229 score: 14.426917
None	No IPR available	GENE3D	4.10.1000.10		coord: 112..176 e-value: 5.5E-8 score: 34.7
None	No IPR available	GENE3D	4.10.1000.10		coord: 199..233 e-value: 2.8E-12 score: 47.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 40..298
None	No IPR available	PANTHER	PTHR12547:SF121	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	coord: 40..298
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 119..147
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 199..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18826-RA	Carg18826-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding