Carg18813 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18813
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Coatomer, beta' subunit
Location	Carg_Chr08: 3770004 .. 3772725 (-)
RNA-Seq Expression	Carg18813
Synteny	Carg18813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACGGTCAAAACTGAAACTTTATTGTAGAATCGGTTGCACTGAGAAATTCCGGGAGGGGGGCGAATGGCATTATCGTAAATTTATGACGTAACTGCTAAGCTTCGATCTGCTCTCGCTTCCTTCTCATATTAACACGAAAGACTTCGTTGGTTCAATTCTGAAACCTCTCTCTCTACCCATTTATCTTCTTCAAGCTGCGATCACCTGGATCGCTCGGGTGCAACGATCGAGATCTCATTTCCTAAGCTCTCATTTGCTCACTATGGTGAGTTGAAGACTTTCTTCCATTTCTCTGAACAAATCTGCATTCAATTATAACTTAGATCTGGTTGAATTCTGCTACGATTCTGTCACAGTTCCTCACTTTTGTTGATATTGGCATTGCCTTCCGAGTTCTTCGATTATTCTCTTTGATAATTTGAGTGCGCGAGTTTGATTGGCTCTGCCTTTTCTTTGTTTGGGACATAGATACGGAATTGTTCTCTCCTTCTCTTTCTCTTAGATTTTATCAGAGAAGAAGGACCCTAGGATCTGGCATTCTAATGCTTGGTCCATGGAATTTGGCTGCTATTTCGCGGCTACTACTTAAACTTATTTTGTTATTATCTACGACTTCGAATCGTTATTGCTGCTACGAATTACTTATTTGTTTTTTGGTTGTTTGTGTATTCGCAGCCTCTCAGACTTGAAATCAAGGTATTCCGATTCTTCTGCGTGTTAAATGGATAGAATGTGTATAATTTTGATTATTTTTATTTCTTGTTATGTGTTATAAAATACGTTTTCTTATTATTTGGTTCAGAGGAAACTCGCTCAAAGATCGGAAAGGGTAAAATCTGTGGATTTGCATCCAACAGAACCATGGTAAGTTGGATAGGTGCTTATTAATACCGTATCTTGGCAATGCTACATCCTAGTCCATTATGAGCCGCTTAAAATTATGATAGATGTAAATGGTTTCCGTTATGTTAGAATATTGTAGTTCATGATCATTCGTTTCCCATCTGGTTTGGATCTTTGAGATTTCTTAGTTGATCATTTACCGAACTGTGATTATATTTATTTCTACTGCAAAAGAGATGAAGAAAACTTGAAGGTTCTGACACACACCTTACTGCAGGATTCTGGCCAGTTTGTATTCAGGAACTGTATGTATCTGGAACTATCAGTCTCAGGTATGGCTATGTTATCATTGATGAATACATGGATGCCTTTTGAACTTTTCTTTTTACGGAGGTACTTCAAAATTGTTTTCAAAACGAGACCTGATTTTTCTAATTACTAACTCAACCATATTTATCCATGAATTGTTGTATATCCCGAAGTTTGTTACACTATTTTCTTGATGATTCCATAATCTAGCCCAAAAGCTTCTCAGAGTAAGTATGACATGGTTTCATGAGTAAGATAATTGTCACCGTAAGTGGAACTTGTAAAACCTATGGTTTGCAGTTGGATTCTTTCTGTTTTTTCAAGTCTTCACATTTTTATTTGGAGAAGAAACTAAAACTTTATTTTTGAGCAGAAAAGCATATGGTAGTTATTGATCATCATTTGGTAGAAGAGAAGAGGAGTTCATTACACATATGTATTTATTCATTTATATTCATGAGTATTGTGGCTAGCTTGTGTGCACCTCAACTATTCTCACTGAACAACCACTTGACCTCAATAAATAATTATGTATTATAAGTAACGTTCACATATAACTTAGGTGGTCTTCCAAATTTTTATCATTTTCCTTTTTTCTCGATGACTTCTATGATTTATTTCTTTTTTCTTCCTTCATTTTCTTATAAGAACTTCTATGGGTTATAAGAATGATTTTTCACTTGGAGTTCTAGTTCGGACTTTGGTAGGTGCATGAAATGTGAATTTATGAAAATACCTCCTCTTCCATCTCTGAATTCTATAAATTCGTTGTCTAATTTTGTTAACTCTGAAATTATTTAAAAATTAAATGAATCCTCTGGCAACTTCTGCAGATTATGGTCAAGTCTTTTGAGGTGACGGAGTTACCAGGTAAGCAGTAAAGTCAATATGGAGAGATAGAGAAGTAAAGGTGAGTGGATGGAAGAATATGCTATGAAGTGTTTGTTGTGTGTTGACTGTGTTGGCAGTTAGGTCAGCCAAGTTTATCGTGCGGAAGCAATGGGTCGTTGCTGGAGCTGATGACATGTTCCTTCGTGTCTACAATTATAATACAATGGATAAAGTAAAAGTCTTTGAGGCTCATACAGATTACATTAGGTGTGTTGCGGTCCATCCTACGCTTCCATATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGTGTGCACTCAAATTTTTGAGGGACATTCTCACTATGTGATGCAAGTAACATTTAATCCCAAGGATACTAACACCTTTGCAAGTGCTTCTCTTGACCGCACTATTAAGGTAATATTGAGAATTTTCTCATAGTGTAACTTCTTATCTGTTCCTAATCTGGATGGTGATGCTGAATGAAATTTGGGAAAATTTTTGTGGCAGATTTGGAATCTTGGCTCTCCCGATCCTAATTTTACATTGGATGCCCATCAGAAGGGAGTAAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTACCTAATTACTGGTTCTGACGATCACACTGCTAAGGTCTCCATTATTCTAATTCTTAACCTAACATTCACTGGTTCCAAATAG

mRNA sequence

ATTACGGTCAAAACTGAAACTTTATTGTAGAATCGGTTGCACTGAGAAATTCCGGGAGGGGGGCGAATGGCATTATCGTAAATTTATGACGTAACTGCTAAGCTTCGATCTGCTCTCGCTTCCTTCTCATATTAACACGAAAGACTTCGTTGGTTCAATTCTGAAACCTCTCTCTCTACCCATTTATCTTCTTCAAGCTGCGATCACCTGGATCGCTCGGGTGCAACGATCGAGATCTCATTTCCTAAGCTCTCATTTGCTCACTATGCCTCTCAGACTTGAAATCAAGAGGAAACTCGCTCAAAGATCGGAAAGGGTAAAATCTGTGGATTTGCATCCAACAGAACCATGGATTCTGGCCAGTTTGTATTCAGGAACTGTATGTATCTGGAACTATCAGTCTCAGATTATGGTCAAGTCTTTTGAGGTGACGGAGTTACCAGTTAGGTCAGCCAAGTTTATCGTGCGGAAGCAATGGGTCGTTGCTGGAGCTGATGACATGTTCCTTCGTGTCTACAATTATAATACAATGGATAAAGTAAAAGTCTTTGAGGCTCATACAGATTACATTAGGTGTGTTGCGGTCCATCCTACGCTTCCATATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGTGTGCACTCAAATTTTTGAGGGACATTCTCACTATGTGATGCAAGTAACATTTAATCCCAAGGATACTAACACCTTTGCAAGTGCTTCTCTTGACCGCACTATTAAGATTTGGAATCTTGGCTCTCCCGATCCTAATTTTACATTGGATGCCCATCAGAAGGGAGTAAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTACCTAATTACTGGTTCTGACGATCACACTGCTAAGGTCTCCATTATTCTAATTCTTAACCTAACATTCACTGGTTCCAAATAG

Coding sequence (CDS)

ATGCCTCTCAGACTTGAAATCAAGAGGAAACTCGCTCAAAGATCGGAAAGGGTAAAATCTGTGGATTTGCATCCAACAGAACCATGGATTCTGGCCAGTTTGTATTCAGGAACTGTATGTATCTGGAACTATCAGTCTCAGATTATGGTCAAGTCTTTTGAGGTGACGGAGTTACCAGTTAGGTCAGCCAAGTTTATCGTGCGGAAGCAATGGGTCGTTGCTGGAGCTGATGACATGTTCCTTCGTGTCTACAATTATAATACAATGGATAAAGTAAAAGTCTTTGAGGCTCATACAGATTACATTAGGTGTGTTGCGGTCCATCCTACGCTTCCATATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGGTGTGCACTCAAATTTTTGAGGGACATTCTCACTATGTGATGCAAGTAACATTTAATCCCAAGGATACTAACACCTTTGCAAGTGCTTCTCTTGACCGCACTATTAAGATTTGGAATCTTGGCTCTCCCGATCCTAATTTTACATTGGATGCCCATCAGAAGGGAGTAAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTACCTAATTACTGGTTCTGACGATCACACTGCTAAGGTCTCCATTATTCTAATTCTTAACCTAACATTCACTGGTTCCAAATAG

Protein sequence

MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPVRSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVSIILILNLTFTGSK

Homology

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BLAST of Carg18813 vs. NCBI nr
Match: KAG7025784.1 (Coatomer subunit beta'-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 478.0 bits (1229), Expect = 4.5e-131
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVSIILILNLTFTGSK 228
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVSIILILNLTFTGSK
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVSIILILNLTFTGSK 227

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BLAST of Carg18813 vs. NCBI nr
Match: XP_022964510.1 (coatomer subunit beta'-2 isoform X1 [Cucurbita moschata] >XP_023514348.1 coatomer subunit beta'-2 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023514349.1 coatomer subunit beta'-2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

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BLAST of Carg18813 vs. NCBI nr
Match: XP_023000306.1 (coatomer subunit beta'-2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

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BLAST of Carg18813 vs. NCBI nr
Match: KAG6593443.1 (Coatomer subunit beta'-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 86  MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 145

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 146 RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 205

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 206 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 265

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 266 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 298

[Close]

BLAST of Carg18813 vs. NCBI nr
Match: XP_023000305.1 (coatomer subunit beta'-2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 453.4 bits (1165), Expect = 1.2e-123
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

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BLAST of Carg18813 vs. ExPASy Swiss-Prot
Match: Q9C827 (Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 3.6e-123
Identity = 203/213 (95.31%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q+M KSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKF+ RKQWVVAGADDM++RVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGW CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. ExPASy Swiss-Prot
Match: Q9CAA0 (Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 438.0 bits (1125), Expect = 6.7e-122
Identity = 202/213 (94.84%), Postives = 208/213 (97.65%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRK AQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q MVKSF+VTELPV
Sbjct: 1   MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFI RKQWVVAGADDMF+RVYNYNTMDK+KVFEAH DYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAH KGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. ExPASy Swiss-Prot
Match: Q8L828 (Coatomer subunit beta'-3 OS=Arabidopsis thaliana OX=3702 GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.7e-120
Identity = 200/213 (93.90%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRL+IKRK AQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQ+Q + KSFEVTELPV
Sbjct: 1   MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFI RKQWVVAGADDM++RVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIPRKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWE GW CTQIFEGHSHYVMQV FNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

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BLAST of Carg18813 vs. ExPASy Swiss-Prot
Match: Q5VQ78 (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 5.3e-119
Identity = 198/213 (92.96%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRK AQRSERVKSVDLHPTEPWIL+SLYSG+VCIW+YQSQ MVKSFEV+ELPV
Sbjct: 1   MPLRLEIKRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQSQTMVKSFEVSELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFI RKQWVVAGADDMF+RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDW+KGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT KIW+LGSPDPNFT
Sbjct: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LD HQKGVNCVDYFTGGD+PYLITGSDD TAKV
Sbjct: 181 LDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKV 213

[Close]

BLAST of Carg18813 vs. ExPASy Swiss-Prot
Match: Q6H8D5 (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 2.6e-118
Identity = 193/213 (90.61%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRL+IKRKLAQRSERVKSVDLHPTEPWIL+SLYSG+VCIWNYQ+Q MVKSFEVTELPV
Sbjct: 1   MPLRLDIKRKLAQRSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RS+KFI RKQW+VAGADDMF+RVYNYNTMDKVKVFEAHTDYIRCVAVHPT P+VLSSSDD
Sbjct: 61  RSSKFIARKQWIVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDW+KGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT+K+W+LGSPDPNFT
Sbjct: 121 MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LD H KGVNCVDYFTGGD+PYLITGSDD TAKV
Sbjct: 181 LDGHSKGVNCVDYFTGGDRPYLITGSDDQTAKV 213

[Close]

BLAST of Carg18813 vs. ExPASy TrEMBL
Match: A0A6J1KFI5 (Coatomer subunit beta' OS=Cucurbita maxima OX=3661 GN=LOC111494577 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 5.7e-124
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. ExPASy TrEMBL
Match: A0A6J1KHY4 (Coatomer subunit beta' OS=Cucurbita maxima OX=3661 GN=LOC111494577 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 5.7e-124
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. ExPASy TrEMBL
Match: A0A6J1HJ34 (Coatomer subunit beta' OS=Cucurbita moschata OX=3662 GN=LOC111464515 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 5.7e-124
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. ExPASy TrEMBL
Match: A0A6J1HL06 (Coatomer subunit beta' OS=Cucurbita moschata OX=3662 GN=LOC111464515 PE=3 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 5.7e-124
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. ExPASy TrEMBL
Match: A0A5A7UTN3 (Coatomer subunit beta'-2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002440 PE=3 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.3e-123
Identity = 211/213 (99.06%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFIVRKQWVVAGADDMF+RVYNYNTMDK+KVFEAHTDYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIVRKQWVVAGADDMFIRVYNYNTMDKIKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. TAIR 10
Match: AT1G52360.1 (Coatomer, beta' subunit )

HSP 1 Score: 442.2 bits (1136), Expect = 2.5e-124
Identity = 203/213 (95.31%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q+M KSFEVTELPV
Sbjct: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKF+ RKQWVVAGADDM++RVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGW CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. TAIR 10
Match: AT1G52360.2 (Coatomer, beta' subunit )

HSP 1 Score: 440.3 bits (1131), Expect = 9.6e-124
Identity = 202/212 (95.28%), Postives = 209/212 (98.58%), Query Frame = 0


Query: 2   PLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPVR 61
           PLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q+M KSFEVTELPVR
Sbjct: 46  PLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPVR 105

Query: 62  SAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121
           SAKF+ RKQWVVAGADDM++RVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDDM
Sbjct: 106 SAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDM 165

Query: 122 LIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181
           LIKLWDWEKGW CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL
Sbjct: 166 LIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 225

Query: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 226 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 257

[Close]

BLAST of Carg18813 vs. TAIR 10
Match: AT1G79990.3 (structural molecules )

HSP 1 Score: 438.0 bits (1125), Expect = 4.8e-123
Identity = 202/213 (94.84%), Postives = 208/213 (97.65%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRK AQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q MVKSF+VTELPV
Sbjct: 1   MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFI RKQWVVAGADDMF+RVYNYNTMDK+KVFEAH DYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAH KGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. TAIR 10
Match: AT1G79990.5 (structural molecules )

HSP 1 Score: 438.0 bits (1125), Expect = 4.8e-123
Identity = 202/213 (94.84%), Postives = 208/213 (97.65%), Query Frame = 0


Query: 1   MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPV 60
           MPLRLEIKRK AQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q MVKSF+VTELPV
Sbjct: 1   MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPV 60

Query: 61  RSAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
           RSAKFI RKQWVVAGADDMF+RVYNYNTMDK+KVFEAH DYIRCVAVHPTLPYVLSSSDD
Sbjct: 61  RSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDD 120

Query: 121 MLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
           MLIKLWDWEKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
Sbjct: 121 MLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180

Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           LDAH KGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 181 LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKV 213

[Close]

BLAST of Carg18813 vs. TAIR 10
Match: AT1G79990.1 (structural molecules )

HSP 1 Score: 436.0 bits (1120), Expect = 1.8e-122
Identity = 201/212 (94.81%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 2   PLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQIMVKSFEVTELPVR 61
           PLRLEIKRK AQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQ+Q MVKSF+VTELPVR
Sbjct: 217 PLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVR 276

Query: 62  SAKFIVRKQWVVAGADDMFLRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121
           SAKFI RKQWVVAGADDMF+RVYNYNTMDK+KVFEAH DYIRCVAVHPTLPYVLSSSDDM
Sbjct: 277 SAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDM 336

Query: 122 LIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181
           LIKLWDWEKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL
Sbjct: 337 LIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 396

Query: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 214
           DAH KGVNCVDYFTGGDKPYLITGSDDHTAKV
Sbjct: 397 DAHLKGVNCVDYFTGGDKPYLITGSDDHTAKV 428

The following BLAST results are available for this feature:

BLAST of Carg18813 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025784.1	4.5e-131	100.00	Coatomer subunit beta'-2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022964510.1	1.2e-123	100.00	coatomer subunit beta'-2 isoform X1 [Cucurbita moschata] >XP_023514348.1 coatome...	[more]
XP_023000306.1	1.2e-123	100.00	coatomer subunit beta'-2 isoform X2 [Cucurbita maxima]	[more]
KAG6593443.1	1.2e-123	100.00	Coatomer subunit beta'-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023000305.1	1.2e-123	100.00	coatomer subunit beta'-2 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg18813 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C827	3.6e-123	95.31	Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1	[more]
Q9CAA0	6.7e-122	94.84	Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2	[more]
Q8L828	1.7e-120	93.90	Coatomer subunit beta'-3 OS=Arabidopsis thaliana OX=3702 GN=At3g15980 PE=2 SV=1	[more]
Q5VQ78	5.3e-119	92.96	Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g014390...	[more]
Q6H8D5	2.6e-118	90.61	Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g020910...	[more]

BLAST of Carg18813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFI5	5.7e-124	100.00	Coatomer subunit beta' OS=Cucurbita maxima OX=3661 GN=LOC111494577 PE=3 SV=1	[more]
A0A6J1KHY4	5.7e-124	100.00	Coatomer subunit beta' OS=Cucurbita maxima OX=3661 GN=LOC111494577 PE=3 SV=1	[more]
A0A6J1HJ34	5.7e-124	100.00	Coatomer subunit beta' OS=Cucurbita moschata OX=3662 GN=LOC111464515 PE=3 SV=1	[more]
A0A6J1HL06	5.7e-124	100.00	Coatomer subunit beta' OS=Cucurbita moschata OX=3662 GN=LOC111464515 PE=3 SV=1	[more]
A0A5A7UTN3	1.3e-123	99.06	Coatomer subunit beta'-2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Carg18813 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52360.1	2.5e-124	95.31	Coatomer, beta' subunit	[more]
AT1G52360.2	9.6e-124	95.28	Coatomer, beta' subunit	[more]
AT1G79990.3	4.8e-123	94.84	structural molecules	[more]
AT1G79990.5	4.8e-123	94.84	structural molecules	[more]
AT1G79990.1	1.8e-122	94.81	structural molecules	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 174..215 e-value: 0.031 score: 23.4 coord: 46..85 e-value: 4.2 score: 13.1 coord: 4..43 e-value: 0.49 score: 18.9 coord: 88..127 e-value: 8.5E-9 score: 45.2 coord: 131..171 e-value: 2.6E-9 score: 46.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 91..127 e-value: 1.1E-6 score: 29.2 coord: 177..213 e-value: 3.3E-4 score: 21.4 coord: 18..43 e-value: 0.085 score: 13.8 coord: 133..171 e-value: 2.0E-5 score: 25.2
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 95..127 score: 12.74747
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 138..180 score: 13.649761
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 11..215 e-value: 1.4E-80 score: 272.2
None	No IPR available	PANTHER	PTHR19876	COATOMER	coord: 1..213
None	No IPR available	PANTHER	PTHR19876:SF54	COATOMER SUBUNIT BETA'-1	coord: 1..213
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 95..127 score: 10.601049
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 138..172 score: 11.207411
None	No IPR available	CDD	cd00200	WD40	coord: 6..213 e-value: 1.23228E-46 score: 154.03
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 3..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18813-RA	Carg18813-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030663	COPI-coated vesicle membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005198	structural molecule activity