Carg18811 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18811
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SYS1 homolog
Location	Carg_Chr08: 3789924 .. 3792658 (-)
RNA-Seq Expression	Carg18811
Synteny	Carg18811

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGGATTTTACACGAGTTTACAACTGTAGCGCATCTCCACAAACGAAATTCTCCGGAGCAGAACAACACGACCTAAAATTTCAGAAGAAAAAAGGGGAACGAAATTTGCTAGGAAGCCTAAATTTTGTCTCTTCTCGATCTTAAGATTGACGGTTTTACATGTTTCATGTTTGATCTTATTCTTATTCGCATTGCGGTGCGTTCGTTGTATTAGCGAATTTGGGATTTATTTGATTTCTAGGGTTGGATTCTGTAGGGAATTGGAATTTATTTGATATCTAGGGTTGAATTTTTTAGGGAATTGGGATTCACTTCTCTCTTTGATTTTGAATGTTACTCTAGATACATATTGTTTGGCTTTTAGTATGGGTGGATGTACGATTTGTTTGTTTCAGATCGAATGAAACGAGATCGTAAAATCATCGTTACGAAGATTTTAGGGAGTTCTATTCCGAAGGGGCGACAAATTCACGAAGAGAAATGGGCATATGTTGGATTTTATTGTCAATTTGAGAGCGTGAAAAGGATAGATAATAAGTCCTTTATTGTTGGGAAATCGACTGTTCTTCACTCCACGAGTTCGTAATTTATATTTGGTTTATACTGAAAGAAGTTGGGTTCTGTTGAAGTTAGGACCGAGTGAGTGGTGAAGTCATGTTCTATGGTGCATTGGTATGGGATCCATGGCTAATTGTTGCCCAAATTGTTTGCCTTCAATGTTTGTATTACCTGACTCTTGGCATTCTGCTGGCGACTCTAGTTGGGACTCGTGTTTCTCGAATCAGCCTTGTTTACTTCTTTGATTATGCTACACTAACTGTCTCTACGGCCACTGGTTTGTGTGTTATTGCTTCATTCCTGCTAACTGCGCTTGCTGGGTAAGAACTCTGTTTTACTTTTTTTCTCCTCCATATTCGGTATTATGTATATAACCACAGACTAGTTGATGCATACACTCTTGACCAAGAATCTCTCCACCATGTTCATTTGAATCTCCTCATCCCATATGTTGTTTGAATCACTATGCATTGGATTGTTAGGAATAATTGACAGTAGTTTGGAGAAGTTGCATCCTATCGAACCATTGTTAGATCATTTGGAATTAAATAGATTAATCGACCTCGCTGATGTTGTTTTTATTGTTAACCATGAAATGGTTTGTTTGAATGTCAATATTAATGATTTTGTTCTTATCTCTAATTATGTAATGAGGCCATTTTTGTTGTCACCTGTAGTTGCTGTAACTTTTTGATGTCGAAGTTTGTTCTTCTTAATGGTTTGCTGTATCTATTGGTGGTTCCTTCTGCAATTGATGTGAATTTCAATGTTTTTGTCTGTTGCCATCGCAGAAATTCACATGGTAAACATTTAAATATATGAAACTCTACAGAATGGAAGTTTTTCCTAAATGGTGTTTTCAATTGGGCTCGGGGTTGGGAATAGTAACGTAGTTTTGGAATGGTATCAACTAATTGATCTTGATTTGGCTGAATGTTACCCTAAACAACACCTCTATAGTATTGTTACGTTTTCCTGATGAGAATAACACTCTCTTCCAACCGGGAATTGGTTGGAGAGTTTTGAAAATTAAGCTTATAACCCCTACTTCCACCCATGAATTTCTTTGAAAATTAAGCTTATCAAATGCGTTTAAGTAGTCGGTTTTGAATATTTTTCTTCATCTTCATATTGTTTATGTTGTCAGCTTCTCTCACCATTACTATTTTATTGTAATGCAGGGCAGGATTTTTGGTTTATTTGATTGAAAGAGCAAAGAAGTGCTTAGATTTTGCGGCCACACTCTATATATTCCACCTTTTCATCTGTATCGCTTATGGAGGGTGGCCTTCGTCGATGACATGGTGGGTTGTGAATGGTACAGGGCTTGTAGTGATGTCTTTGCTGGGTGAATATCTGTGTATCAAACGTGAACTGCGAGAGATTCCCATAACACGATTGCGTTCGAGTAAGGCTTCTTTCCTCAATGAAATGAACAAAAGAATCTTCTTTGACAGTCATAATTCATAGTAGTAACAACTAACATAGACTGCCAAAACAAAACATACTTGCTACTACACAAATTTTATGCTTGGATTTTCAATTGAGTTTAACATGTTCTGATATGTACATAAAAGGGTTGGATCACATCTGAGTGGTCATAAGTTTTGGTCCCTCTCACTGAGAAGCAGATTTAGTTGTAGCATATAACATTGAGCATATTTTGGTGCAGATGTTTGAGCTTTAAGGGAAGTTCAAATTGCAAGAACCACCTGTTGATGTGTGTGAATTTCAGTGGCCTATCTTATTAAATCTGCCTAGGCCAGATCAAATTAGTATCAAGGAAGAAGAATCTCTTTGAGATATTGGAAAAACTGGCATTATTGGTGCACTGGATTTATTATATTTGATTGGAGGGTTTACATGAGTTCCATGAAGTTCTTGGGGGAAAGAGCTCACTTTCAATGGACAAAAAGGCTATGACTAATGCCTATATGAGCTCGATTCATTTGTTCTTTTCTCTTTTCAACTCCTCACACGGATGAGTTTACAGCTTAGTTTGGAAAGGAAACTTCTTTATTCTCTTTCTTTCTTGCTCTTCTGAAGTTTCAATGACAGTGAAAAGCCATGATGATGATAATCAGAATTTAATATGGAAACTAAAGGAGAATTCTGTTGGATTGCTTTTGTTTTCTATTATTGCTTTGATACTCTTGCTTTCCTCTTCATAAAAGC

mRNA sequence

GCTTGGATTTTACACGAGTTTACAACTGTAGCGCATCTCCACAAACGAAATTCTCCGGAGCAGAACAACACGACCTAAAATTTCAGAAGAAAAAAGGGGAACGAAATTTGCTAGGAAGCCTAAATTTTGTCTCTTCTCGATCTTAAGATTGACGGTTTTACATGTTTCATGTTTGATCTTATTCTTATTCGCATTGCGGTGCGTTCGTTGTATTAGCGAATTTGGGATTTATTTGATTTCTAGGGTTGGATTCTGTAGGGAATTGGAATTTATTTGATATCTAGGGTTGAATTTTTTAGGGAATTGGGATTCACTTCTCTCTTTGATTTTGAATGTTACTCTAGATACATATTGTTTGGCTTTTAGTATGGGTGGATGTACGATTTGTTTGTTTCAGATCGAATGAAACGAGATCGTAAAATCATCGTTACGAAGATTTTAGGGAGTTCTATTCCGAAGGGGCGACAAATTCACGAAGAGAAATGGGCATATGTTGGATTTTATTGTCAATTTGAGAGCGTGAAAAGGATAGATAATAAGTCCTTTATTGTTGGGAAATCGACTGTTCTTCACTCCACGAGTTCGTAATTTATATTTGGTTTATACTGAAAGAAGTTGGGTTCTGTTGAAGTTAGGACCGAGTGAGTGGTGAAGTCATGTTCTATGGTGCATTGGTATGGGATCCATGGCTAATTGTTGCCCAAATTGTTTGCCTTCAATGTTTGTATTACCTGACTCTTGGCATTCTGCTGGCGACTCTAGTTGGGACTCGTGTTTCTCGAATCAGCCTTGTTTACTTCTTTGATTATGCTACACTAACTGTCTCTACGGCCACTGGTTTGTGTGTTATTGCTTCATTCCTGCTAACTGCGCTTGCTGGGGCAGGATTTTTGGTTTATTTGATTGAAAGAGCAAAGAAGTGCTTAGATTTTGCGGCCACACTCTATATATTCCACCTTTTCATCTGTATCGCTTATGGAGGGTGGCCTTCGTCGATGACATGGTGGGTTGTGAATGGTACAGGGCTTGTAGTGATGTCTTTGCTGGGTGAATATCTGTGTATCAAACGTGAACTGCGAGAGATTCCCATAACACGATTGCGTTCGAATGTTTGAGCTTTAAGGGAAGTTCAAATTGCAAGAACCACCTGTTGATGTGTGTGAATTTCAGTGGCCTATCTTATTAAATCTGCCTAGGCCAGATCAAATTAGTATCAAGGAAGAAGAATCTCTTTGAGATATTGGAAAAACTGGCATTATTGGTGCACTGGATTTATTATATTTGATTGGAGGGTTTACATGAGTTCCATGAAGTTCTTGGGGGAAAGAGCTCACTTTCAATGGACAAAAAGGCTATGACTAATGCCTATATGAGCTCGATTCATTTGTTCTTTTCTCTTTTCAACTCCTCACACGGATGAGTTTACAGCTTAGTTTGGAAAGGAAACTTCTTTATTCTCTTTCTTTCTTGCTCTTCTGAAGTTTCAATGACAGTGAAAAGCCATGATGATGATAATCAGAATTTAATATGGAAACTAAAGGAGAATTCTGTTGGATTGCTTTTGTTTTCTATTATTGCTTTGATACTCTTGCTTTCCTCTTCATAAAAGC

Coding sequence (CDS)

ATGTTCTATGGTGCATTGGTATGGGATCCATGGCTAATTGTTGCCCAAATTGTTTGCCTTCAATGTTTGTATTACCTGACTCTTGGCATTCTGCTGGCGACTCTAGTTGGGACTCGTGTTTCTCGAATCAGCCTTGTTTACTTCTTTGATTATGCTACACTAACTGTCTCTACGGCCACTGGTTTGTGTGTTATTGCTTCATTCCTGCTAACTGCGCTTGCTGGGGCAGGATTTTTGGTTTATTTGATTGAAAGAGCAAAGAAGTGCTTAGATTTTGCGGCCACACTCTATATATTCCACCTTTTCATCTGTATCGCTTATGGAGGGTGGCCTTCGTCGATGACATGGTGGGTTGTGAATGGTACAGGGCTTGTAGTGATGTCTTTGCTGGGTGAATATCTGTGTATCAAACGTGAACTGCGAGAGATTCCCATAACACGATTGCGTTCGAATGTTTGA

Protein sequence

MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTATGLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVNGTGLVVMSLLGEYLCIKRELREIPITRLRSNV

Homology

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BLAST of Carg18811 vs. NCBI nr
Match: KAG7025786.1 (Protein SYS1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.0 bits (759), Expect = 9.4e-77
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT
Sbjct: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN
Sbjct: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

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BLAST of Carg18811 vs. NCBI nr
Match: XP_022964515.1 (protein SYS1 homolog [Cucurbita moschata] >KAG6593445.1 Protein SYS1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 294.7 bits (753), Expect = 4.7e-76
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT
Sbjct: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYI HLFICIAYGGWPSSMTWWVVN
Sbjct: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYILHLFICIAYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

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BLAST of Carg18811 vs. NCBI nr
Match: XP_023514353.1 (protein SYS1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGALVWDPWLIVAQIVCLQCLYYLTLG+LLATLVGTRVSRISLVYFFDYATLTVSTAT
Sbjct: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGMLLATLVGTRVSRISLVYFFDYATLTVSTAT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYI HLFICIAYGGWPSSMTWWVVN
Sbjct: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYILHLFICIAYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

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BLAST of Carg18811 vs. NCBI nr
Match: XP_023000404.1 (protein SYS1 homolog [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 4.0e-75
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGALVWDPWLIVAQIVCLQCLYYLTLGI LATLVGTRVSRISLVYFFDYATLTVST T
Sbjct: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGIFLATLVGTRVSRISLVYFFDYATLTVSTTT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYI HLFICIAYGGWPSSMTWWVVN
Sbjct: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYILHLFICIAYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

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BLAST of Carg18811 vs. NCBI nr
Match: XP_038898906.1 (protein SYS1 homolog [Benincasa hispida])

HSP 1 Score: 287.3 bits (734), Expect = 7.5e-74
Identity = 145/152 (95.39%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGA+VWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYAT+TVSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           G CVIASFLL+A+AGAG+LVYLIERAKKCLDFAATLYIFHLFICI YGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSAIAGAGYLVYLIERAKKCLDFAATLYIFHLFICIIYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

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BLAST of Carg18811 vs. ExPASy Swiss-Prot
Match: Q55E69 (Protein SYS1 homolog OS=Dictyostelium discoideum OX=44689 GN=sys1 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.0e-26
Identity = 59/147 (40.14%), Postives = 94/147 (63.95%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFY    WDP LI+ QI+ +QCLYY+ L  +L  L     S +SL   F+Y ++   + +
Sbjct: 1   MFYKYNAWDPKLIIGQILSIQCLYYILLAGILYLLDSMFSSSLSLEQMFEYQSINTHSQS 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           G  V+ +FL+ +L G+  L Y++ER+KKCLD +AT+   H  I     G+P ++ WW + 
Sbjct: 61  GRVVMTAFLINSLFGSFCLKYIVERSKKCLDHSATVTFIHFIIVWIVSGFPKTVVWWAIQ 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITR 148
             G+V+M+++GEYLC+++EL +IP+ R
Sbjct: 121 LIGMVIMAMIGEYLCMRKELMDIPLQR 147

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BLAST of Carg18811 vs. ExPASy Swiss-Prot
Match: Q8N2H4 (Protein SYS1 homolog OS=Homo sapiens OX=9606 GN=SYS1 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.3e-24
Identity = 67/152 (44.08%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 3   YGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTATGL 62
           + + VWDP LI++QIV +Q +YY +LG+ LA + G   S  SL   FD   L  ST  G 
Sbjct: 5   FRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGR 64

Query: 63  CVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGG-WPSSMTWWVVNG 122
             + SF+L AL  A  L+Y I R K+CLDF  T++ FHL  C  Y   +PS++TWW+V  
Sbjct: 65  LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQA 124

Query: 123 TGLVVMSLLGEYLCIKRELREIPITRL-RSNV 153
             + +M+++GEYLC++ EL+EIP+    +SNV
Sbjct: 125 VCIALMAVIGEYLCMRTELKEIPLNSAPKSNV 156

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BLAST of Carg18811 vs. ExPASy Swiss-Prot
Match: A4K2N5 (Protein SYS1 homolog OS=Papio anubis OX=9555 GN=SYS1 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.3e-24
Identity = 67/152 (44.08%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 3   YGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTATGL 62
           + + VWDP LI++QIV +Q +YY +LG+ LA + G   S  SL   FD   L  ST  G 
Sbjct: 5   FRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGR 64

Query: 63  CVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGG-WPSSMTWWVVNG 122
             + SF+L AL  A  L+Y I R K+CLDF  T++ FHL  C  Y   +PS++TWW+V  
Sbjct: 65  LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQA 124

Query: 123 TGLVVMSLLGEYLCIKRELREIPITRL-RSNV 153
             + +M+++GEYLC++ EL+EIP+    +SNV
Sbjct: 125 VCIALMAVIGEYLCMRTELKEIPLNSAPKSNV 156

[Close]

BLAST of Carg18811 vs. ExPASy Swiss-Prot
Match: A4K2W1 (Protein SYS1 homolog OS=Pongo abelii OX=9601 GN=SYS1 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.3e-24
Identity = 67/152 (44.08%), Postives = 96/152 (63.16%), Query Frame = 0


Query: 3   YGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTATGL 62
           + + VWDP LI++QIV +Q +YY +LG+ LA + G   S  SL   FD   L  ST  G 
Sbjct: 5   FRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGR 64

Query: 63  CVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGG-WPSSMTWWVVNG 122
             + SF+L AL  A  L+Y I R K+CLDF  T++ FHL  C  Y   +PS++TWW+V  
Sbjct: 65  LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQA 124

Query: 123 TGLVVMSLLGEYLCIKRELREIPITRL-RSNV 153
             + +M+++GEYLC++ EL+EIP+    +SNV
Sbjct: 125 VCIALMAVIGEYLCMRTELKEIPLNSAPKSNV 156

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BLAST of Carg18811 vs. ExPASy Swiss-Prot
Match: A7S6Y0 (Protein SYS1 homolog OS=Nematostella vectensis OX=45351 GN=sys1 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.6e-24
Identity = 57/140 (40.71%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 7   VWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTATGLCVIA 66
           VWDP LI++QI+ +QC +Y++LG+ +  +     S  SL  FF Y  L +S+  G  ++ 
Sbjct: 9   VWDPVLIISQIIAIQCTFYISLGVWVLIVDYWSGSIHSLDQFFAYKELDISSLKGKLLMI 68

Query: 67  SFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVNGTGLVV 126
           +F L +L GA  L ++++RAK+CLDF  T +I HL  C  Y G+P S TWW++N   L +
Sbjct: 69  AFCLNSLTGAMALWFIVKRAKQCLDFTTTAHIVHLVFCCIYAGFPFSWTWWLLNIICLAL 128

Query: 127 MSLLGEYLCIKRELREIPIT 147
           M+++GE++C+K EL+ I ++
Sbjct: 129 MAVIGEFVCMKTELKAIKVS 148

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BLAST of Carg18811 vs. ExPASy TrEMBL
Match: A0A6J1HL11 (protein SYS1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464518 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT
Sbjct: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYI HLFICIAYGGWPSSMTWWVVN
Sbjct: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYILHLFICIAYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

[Close]

BLAST of Carg18811 vs. ExPASy TrEMBL
Match: A0A6J1KJU0 (protein SYS1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494664 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGALVWDPWLIVAQIVCLQCLYYLTLGI LATLVGTRVSRISLVYFFDYATLTVST T
Sbjct: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGIFLATLVGTRVSRISLVYFFDYATLTVSTTT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYI HLFICIAYGGWPSSMTWWVVN
Sbjct: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYILHLFICIAYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

[Close]

BLAST of Carg18811 vs. ExPASy TrEMBL
Match: A0A0A0KC23 (Protein SYS1 homolog OS=Cucumis sativus OX=3659 GN=Csa_7G446680 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.1e-73
Identity = 143/152 (94.08%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGA+VWDPWLIVAQIVCLQC YYLTLGILLATLVGTRVSRISLVYFFDYAT++VSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCFYYLTLGILLATLVGTRVSRISLVYFFDYATISVSTAT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           G CVIASFLL+A+AGAG+LVYLIERAKKCLDFAATLYIFHLFICI YGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSAIAGAGYLVYLIERAKKCLDFAATLYIFHLFICIIYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

[Close]

BLAST of Carg18811 vs. ExPASy TrEMBL
Match: A0A1S3CGS5 (Protein SYS1 homolog OS=Cucumis melo OX=3656 GN=LOC103500569 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.9e-73
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGA VWDPWLIVAQIVCLQC YYLTLGI LATLVGTRVSRISLVYFFDYAT+TVSTAT
Sbjct: 1   MFYGAGVWDPWLIVAQIVCLQCFYYLTLGIFLATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           G CVIASFLL+A+AGAG+LVYLIERAKKCLDFAATLYIFHLFICI YGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSAIAGAGYLVYLIERAKKCLDFAATLYIFHLFICIVYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

[Close]

BLAST of Carg18811 vs. ExPASy TrEMBL
Match: A0A6J1GPI7 (Protein SYS1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111455962 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 143/152 (94.08%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYGA+VWDPWLIVAQIVCLQCLYYLTLGIL+ATLVGTRVSRISLVYFFDYAT+TVSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCLYYLTLGILIATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           G CVIASFLL+ALAGA +LVYLIERAKKCLDFAATLYI HLFICI YGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSALAGAVYLVYLIERAKKCLDFAATLYILHLFICIVYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGLVVMSLLGEYLCIKRELREIPITRLRSNV
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 152

[Close]

BLAST of Carg18811 vs. TAIR 10
Match: AT1G79990.1 (structural molecules )

HSP 1 Score: 225.7 bits (574), Expect = 2.5e-59
Identity = 109/151 (72.19%), Postives = 124/151 (82.12%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYG  VWDPWLIV QI+CLQC YYLTLG+     +G RV R+SLVYFFDYATLT ST T
Sbjct: 1   MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           G  VIASFL ++LAGA ++++L+ERA+KCLDF+ATLYI HLF CI YGGWPSSM WWVVN
Sbjct: 61  GWSVIASFLFSSLAGAVYMIFLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 152
           GTGL VM+LL EYLCIKRE REIP+ R  SN
Sbjct: 121 GTGLAVMALLAEYLCIKREQREIPMDRFHSN 151

[Close]

BLAST of Carg18811 vs. TAIR 10
Match: AT1G79990.2 (structural molecules )

HSP 1 Score: 224.9 bits (572), Expect = 4.2e-59
Identity = 109/152 (71.71%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYG  VWDPWLIV QI+CLQC YYLTLG+     +G RV R+SLVYFFDYATLT ST T
Sbjct: 1   MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           G  VIASFL ++LAGA ++++L+ERA+KCLDF+ATLYI HLF CI YGGWPSSM WWVVN
Sbjct: 61  GWSVIASFLFSSLAGAVYMIFLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGL VM+LL EYLCIKRE REIP+ R  S V
Sbjct: 121 GTGLAVMALLAEYLCIKREQREIPMDRFHSRV 152

[Close]

BLAST of Carg18811 vs. TAIR 10
Match: AT1G79990.4 (structural molecules )

HSP 1 Score: 224.9 bits (572), Expect = 4.2e-59
Identity = 109/152 (71.71%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 1   MFYGALVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATLTVSTAT 60
           MFYG  VWDPWLIV QI+CLQC YYLTLG+     +G RV R+SLVYFFDYATLT ST T
Sbjct: 1   MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFT 60

Query: 61  GLCVIASFLLTALAGAGFLVYLIERAKKCLDFAATLYIFHLFICIAYGGWPSSMTWWVVN 120
           G  VIASFL ++LAGA ++++L+ERA+KCLDF+ATLYI HLF CI YGGWPSSM WWVVN
Sbjct: 61  GWSVIASFLFSSLAGAVYMIFLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSNV 153
           GTGL VM+LL EYLCIKRE REIP+ R  S V
Sbjct: 121 GTGLAVMALLAEYLCIKREQREIPMDRFHSRV 152

The following BLAST results are available for this feature:

BLAST of Carg18811 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025786.1	9.4e-77	100.00	Protein SYS1-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022964515.1	4.7e-76	99.34	protein SYS1 homolog [Cucurbita moschata] >KAG6593445.1 Protein SYS1-like protei...	[more]
XP_023514353.1	1.0e-75	98.68	protein SYS1 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_023000404.1	4.0e-75	98.03	protein SYS1 homolog [Cucurbita maxima]	[more]
XP_038898906.1	7.5e-74	95.39	protein SYS1 homolog [Benincasa hispida]	[more]

BLAST of Carg18811 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55E69	6.0e-26	40.14	Protein SYS1 homolog OS=Dictyostelium discoideum OX=44689 GN=sys1 PE=3 SV=1	[more]
Q8N2H4	3.3e-24	44.08	Protein SYS1 homolog OS=Homo sapiens OX=9606 GN=SYS1 PE=1 SV=1	[more]
A4K2N5	3.3e-24	44.08	Protein SYS1 homolog OS=Papio anubis OX=9555 GN=SYS1 PE=3 SV=1	[more]
A4K2W1	3.3e-24	44.08	Protein SYS1 homolog OS=Pongo abelii OX=9601 GN=SYS1 PE=3 SV=1	[more]
A7S6Y0	5.6e-24	40.71	Protein SYS1 homolog OS=Nematostella vectensis OX=45351 GN=sys1 PE=3 SV=1	[more]

BLAST of Carg18811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HL11	2.3e-76	99.34	protein SYS1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464518 PE=4 SV=1	[more]
A0A6J1KJU0	1.9e-75	98.03	protein SYS1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494664 PE=4 SV=1	[more]
A0A0A0KC23	3.1e-73	94.08	Protein SYS1 homolog OS=Cucumis sativus OX=3659 GN=Csa_7G446680 PE=3 SV=1	[more]
A0A1S3CGS5	8.9e-73	94.08	Protein SYS1 homolog OS=Cucumis melo OX=3656 GN=LOC103500569 PE=3 SV=1	[more]
A0A6J1GPI7	1.5e-72	94.08	Protein SYS1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111455962 PE=3 SV=1	[more]

BLAST of Carg18811 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79990.1	2.5e-59	72.19	structural molecules	[more]
AT1G79990.2	4.2e-59	71.71	structural molecules	[more]
AT1G79990.4	4.2e-59	71.71	structural molecules	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019185	Integral membrane protein SYS1-related	PFAM	PF09801	SYS1	coord: 6..144 e-value: 1.0E-44 score: 152.2
IPR019185	Integral membrane protein SYS1-related	PANTHER	PTHR12952	SYS1	coord: 1..151
None	No IPR available	PANTHER	PTHR12952:SF3	PROTEIN SYS1 HOMOLOG	coord: 1..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18811-RA	Carg18811-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006895	Golgi to endosome transport
biological_process	GO:0043001	Golgi to plasma membrane protein transport
biological_process	GO:0034067	protein localization to Golgi apparatus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0030173	integral component of Golgi membrane
cellular_component	GO:0005802	trans-Golgi network