Carg18799 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18799
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP-dependent RNA helicase DDX11
Location	Carg_Chr08: 3835959 .. 3836546 (-)
RNA-Seq Expression	Carg18799
Synteny	Carg18799

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTAAAAGAAACCATCCACAAAACTCTTGAAAACTTCAAGCATTTATTCTTCAAAGGGTTTCAAAAGCTGCAGAAACCCACTTCCTTCCTCCTCTTTCCATGCAGCAAAGGAAACCCACAGCCACAGCATACCCATCCAACAGAGAGAATCTACATTGATTTTTATGATGAGTGGCAGTCCACACTGCATAAAGCAGCAAAGAGAAGCATTGACAGAGGCAGTCTGAGAACATCCAAGGAAAACATGAAGGAACAAGAAGAACAAGGCCTTCCAAGGATCAGACAAGAGAAGGCTGTGAAAGAGAAGAAGAAACAAGGAAATACCCATTTCAGAAAAGGTGATGTTAAAAGCTGTAGTAGGAGAAGTGATGGATTAGTACAAAAAATGAAGGAATTGGAGATGTTGGATAGAGGAGATATGGAACAAGAGTTGGATATTGAAGAAGCAATTCATTACTACTCTCGCTTAAGAAGTCCTGTTTATCTTGAAATTGTGGACAGGTTTTTCATGGACATACACTCTGAATTCTCTGTTCCTGAGGCTTCTGCGAAGAGTATGAACAGCTCAAAGAGGAGGTTATAG

mRNA sequence

ATGCTGCTAAAAGAAACCATCCACAAAACTCTTGAAAACTTCAAGCATTTATTCTTCAAAGGGTTTCAAAAGCTGCAGAAACCCACTTCCTTCCTCCTCTTTCCATGCAGCAAAGGAAACCCACAGCCACAGCATACCCATCCAACAGAGAGAATCTACATTGATTTTTATGATGAGTGGCAGTCCACACTGCATAAAGCAGCAAAGAGAAGCATTGACAGAGGCAGTCTGAGAACATCCAAGGAAAACATGAAGGAACAAGAAGAACAAGGCCTTCCAAGGATCAGACAAGAGAAGGCTGTGAAAGAGAAGAAGAAACAAGGAAATACCCATTTCAGAAAAGGTGATGTTAAAAGCTGTAGTAGGAGAAGTGATGGATTAGTACAAAAAATGAAGGAATTGGAGATGTTGGATAGAGGAGATATGGAACAAGAGTTGGATATTGAAGAAGCAATTCATTACTACTCTCGCTTAAGAAGTCCTGTTTATCTTGAAATTGTGGACAGGTTTTTCATGGACATACACTCTGAATTCTCTGTTCCTGAGGCTTCTGCGAAGAGTATGAACAGCTCAAAGAGGAGGTTATAG

Coding sequence (CDS)

ATGCTGCTAAAAGAAACCATCCACAAAACTCTTGAAAACTTCAAGCATTTATTCTTCAAAGGGTTTCAAAAGCTGCAGAAACCCACTTCCTTCCTCCTCTTTCCATGCAGCAAAGGAAACCCACAGCCACAGCATACCCATCCAACAGAGAGAATCTACATTGATTTTTATGATGAGTGGCAGTCCACACTGCATAAAGCAGCAAAGAGAAGCATTGACAGAGGCAGTCTGAGAACATCCAAGGAAAACATGAAGGAACAAGAAGAACAAGGCCTTCCAAGGATCAGACAAGAGAAGGCTGTGAAAGAGAAGAAGAAACAAGGAAATACCCATTTCAGAAAAGGTGATGTTAAAAGCTGTAGTAGGAGAAGTGATGGATTAGTACAAAAAATGAAGGAATTGGAGATGTTGGATAGAGGAGATATGGAACAAGAGTTGGATATTGAAGAAGCAATTCATTACTACTCTCGCTTAAGAAGTCCTGTTTATCTTGAAATTGTGGACAGGTTTTTCATGGACATACACTCTGAATTCTCTGTTCCTGAGGCTTCTGCGAAGAGTATGAACAGCTCAAAGAGGAGGTTATAG

Protein sequence

MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

Homology

[Close]

BLAST of Carg18799 vs. NCBI nr
Match: KAG6593457.1 (hypothetical protein SDJN03_12933, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025797.1 hypothetical protein SDJN02_12295, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 384.0 bits (985), Expect = 7.5e-103
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW 60
           MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW
Sbjct: 1   MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW 60

Query: 61  QSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC 120
           QSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC
Sbjct: 61  QSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC 120

Query: 121 SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180
           SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV
Sbjct: 121 SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180

Query: 181 PEASAKSMNSSKRRL 196
           PEASAKSMNSSKRRL
Sbjct: 181 PEASAKSMNSSKRRL 195

[Close]

BLAST of Carg18799 vs. NCBI nr
Match: XP_023000396.1 (uncharacterized protein LOC111494654 [Cucurbita maxima])

HSP 1 Score: 376.3 bits (965), Expect = 1.6e-100
Identity = 190/195 (97.44%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW 60
           MLL+ETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW
Sbjct: 1   MLLRETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW 60

Query: 61  QSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC 120
           QSTLHKAAKRSIDRGS+RTSKEN KEQEEQGLPRIRQEKAV EKKKQGNTHFRKGDVKSC
Sbjct: 61  QSTLHKAAKRSIDRGSVRTSKENKKEQEEQGLPRIRQEKAVTEKKKQGNTHFRKGDVKSC 120

Query: 121 SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180
           SRRSDGLVQKMKELEMLDRGDMEQELD+EEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV
Sbjct: 121 SRRSDGLVQKMKELEMLDRGDMEQELDLEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180

Query: 181 PEASAKSMNSSKRRL 196
           PEASAKSMNSSKRRL
Sbjct: 181 PEASAKSMNSSKRRL 195

[Close]

BLAST of Carg18799 vs. NCBI nr
Match: XP_038900276.1 (uncharacterized protein LOC120087356 [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 6.6e-75
Identity = 155/206 (75.24%), Postives = 173/206 (83.98%), Query Frame = 0


Query: 1   MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIY 60
           MLLKETI       HKTLENFK  FFKGFQKLQKPTS + F CSKG PQ QHTHPT+R+Y
Sbjct: 1   MLLKETIHKTNNLFHKTLENFKDFFFKGFQKLQKPTSLITFSCSKGKPQ-QHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQE----EQGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRS+D G++ TSKEN+K+++    +Q  PR RQEK VKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSVDGGNVMTSKENVKQEDTNVAKQSPPRSRQEKVVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNSSTRSNGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 196
           FFMD+HSE SVPE S +S+NSSKRRL
Sbjct: 181 FFMDMHSEISVPEPSTRSVNSSKRRL 205

[Close]

BLAST of Carg18799 vs. NCBI nr
Match: XP_016902859.1 (PREDICTED: uncharacterized protein LOC107991904 [Cucumis melo] >KAA0059298.1 putative ATP-dependent RNA helicase DDX11 [Cucumis melo var. makuwa] >TYK04030.1 putative ATP-dependent RNA helicase DDX11 [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 7.4e-74
Identity = 154/206 (74.76%), Postives = 174/206 (84.47%), Query Frame = 0


Query: 1   MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIY 60
           MLLKETI       HKTLE+FK LFFKGFQKLQKPTS + F CSKG  +PQHTHPT+R+Y
Sbjct: 1   MLLKETIHKTNNLFHKTLESFKDLFFKGFQKLQKPTSLITFSCSKG--KPQHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     Q  PR +QEKAVKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSIDKGSVIASKENVKQEDTIVAIQSPPRSKQEKAVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNSSTRSNGLVEKMKELEMLDRSDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 196
           FFMD+HSE SVPE SA+SMNSSKRR+
Sbjct: 181 FFMDMHSEISVPEPSARSMNSSKRRM 204

[Close]

BLAST of Carg18799 vs. NCBI nr
Match: XP_031744975.1 (uncharacterized protein LOC116405196 [Cucumis sativus] >KGN45372.1 hypothetical protein Csa_016780 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 6.2e-73
Identity = 152/206 (73.79%), Postives = 174/206 (84.47%), Query Frame = 0


Query: 1   MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIY 60
           MLLK+TI       HKTLENFK+LFFKGFQKLQKPTS +   CSKG  +PQHTHPT+R+Y
Sbjct: 1   MLLKKTIHKTNNLFHKTLENFKNLFFKGFQKLQKPTSLITLSCSKG--KPQHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     Q  PR +QEKAVKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSIDKGSMIASKENVKQEDTNVAIQSPPRSKQEKAVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNNSTRSNGLVEKMKELEMLDRSDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 196
           FFMD+HSE SVPE SA+S+NSSKRR+
Sbjct: 181 FFMDMHSEISVPEPSARSVNSSKRRI 204

[Close]

BLAST of Carg18799 vs. ExPASy TrEMBL
Match: A0A6J1KFS0 (uncharacterized protein LOC111494654 OS=Cucurbita maxima OX=3661 GN=LOC111494654 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 7.6e-101
Identity = 190/195 (97.44%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW 60
           MLL+ETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW
Sbjct: 1   MLLRETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEW 60

Query: 61  QSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSC 120
           QSTLHKAAKRSIDRGS+RTSKEN KEQEEQGLPRIRQEKAV EKKKQGNTHFRKGDVKSC
Sbjct: 61  QSTLHKAAKRSIDRGSVRTSKENKKEQEEQGLPRIRQEKAVTEKKKQGNTHFRKGDVKSC 120

Query: 121 SRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180
           SRRSDGLVQKMKELEMLDRGDMEQELD+EEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV
Sbjct: 121 SRRSDGLVQKMKELEMLDRGDMEQELDLEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSV 180

Query: 181 PEASAKSMNSSKRRL 196
           PEASAKSMNSSKRRL
Sbjct: 181 PEASAKSMNSSKRRL 195

[Close]

BLAST of Carg18799 vs. ExPASy TrEMBL
Match: A0A5D3BXY4 (Putative ATP-dependent RNA helicase DDX11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002290 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.6e-74
Identity = 154/206 (74.76%), Postives = 174/206 (84.47%), Query Frame = 0


Query: 1   MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIY 60
           MLLKETI       HKTLE+FK LFFKGFQKLQKPTS + F CSKG  +PQHTHPT+R+Y
Sbjct: 1   MLLKETIHKTNNLFHKTLESFKDLFFKGFQKLQKPTSLITFSCSKG--KPQHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     Q  PR +QEKAVKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSIDKGSVIASKENVKQEDTIVAIQSPPRSKQEKAVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNSSTRSNGLVEKMKELEMLDRSDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 196
           FFMD+HSE SVPE SA+SMNSSKRR+
Sbjct: 181 FFMDMHSEISVPEPSARSMNSSKRRM 204

[Close]

BLAST of Carg18799 vs. ExPASy TrEMBL
Match: A0A1S4E3Q5 (uncharacterized protein LOC107991904 OS=Cucumis melo OX=3656 GN=LOC107991904 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.6e-74
Identity = 154/206 (74.76%), Postives = 174/206 (84.47%), Query Frame = 0


Query: 1   MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIY 60
           MLLKETI       HKTLE+FK LFFKGFQKLQKPTS + F CSKG  +PQHTHPT+R+Y
Sbjct: 1   MLLKETIHKTNNLFHKTLESFKDLFFKGFQKLQKPTSLITFSCSKG--KPQHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     Q  PR +QEKAVKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSIDKGSVIASKENVKQEDTIVAIQSPPRSKQEKAVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNSSTRSNGLVEKMKELEMLDRSDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 196
           FFMD+HSE SVPE SA+SMNSSKRR+
Sbjct: 181 FFMDMHSEISVPEPSARSMNSSKRRM 204

[Close]

BLAST of Carg18799 vs. ExPASy TrEMBL
Match: A0A0A0KAF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446870 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 3.0e-73
Identity = 152/206 (73.79%), Postives = 174/206 (84.47%), Query Frame = 0


Query: 1   MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIY 60
           MLLK+TI       HKTLENFK+LFFKGFQKLQKPTS +   CSKG  +PQHTHPT+R+Y
Sbjct: 1   MLLKKTIHKTNNLFHKTLENFKNLFFKGFQKLQKPTSLITLSCSKG--KPQHTHPTDRLY 60

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----QGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     Q  PR +QEKAVKEKKK G 
Sbjct: 61  IDFYDEWQSTLQKAAKRSIDKGSMIASKENVKQEDTNVAIQSPPRSKQEKAVKEKKKPGA 120

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 121 SHLRKGDVKNNSTRSNGLVEKMKELEMLDRSDMEQELDIEEAIHYYSRLRSPVYLEIVDK 180

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 196
           FFMD+HSE SVPE SA+S+NSSKRR+
Sbjct: 181 FFMDMHSEISVPEPSARSVNSSKRRI 204

[Close]

BLAST of Carg18799 vs. ExPASy TrEMBL
Match: A0A6J1DP45 (uncharacterized protein LOC111022197 OS=Momordica charantia OX=3673 GN=LOC111022197 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.0e-72
Identity = 154/206 (74.76%), Postives = 170/206 (82.52%), Query Frame = 0


Query: 1   MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIY 60
           MLLK TI       HKTLENFK+LF +GFQKLQKPTS   F C KGNP   HTHPT+R+Y
Sbjct: 101 MLLKGTIHKTNYLFHKTLENFKYLFSRGFQKLQKPTSLNPFSCRKGNP---HTHPTDRLY 160

Query: 61  IDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQE----EQGLPRIRQEKAVKEKKKQGN 120
           IDFYDEWQSTLHKAAKRSID GS  TSK NMK+++    +Q  P+ RQEKAVKEKKK G 
Sbjct: 161 IDFYDEWQSTLHKAAKRSIDSGSDMTSKGNMKQEDAIVAKQSPPKARQEKAVKEKKKPGI 220

Query: 121 THFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR 180
           +H RKGD+K+ S R +GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+
Sbjct: 221 SHLRKGDLKNNSMRGNGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDK 280

Query: 181 FFMDIHSEFSVPEASAKSMNSSKRRL 196
           FFMDIHSEFSVPE SA S+NSSKRR+
Sbjct: 281 FFMDIHSEFSVPEPSAGSLNSSKRRM 303

[Close]

BLAST of Carg18799 vs. TAIR 10
Match: AT3G16070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15260.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 7.7e-13
Identity = 50/169 (29.59%), Postives = 84/169 (49.70%), Query Frame = 0


Query: 8   HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKA 67
           H+TL + K +  +  +KL +P +       + N     +   + IY  F + W+S L  +
Sbjct: 10  HRTLHSLKSIIIRAGKKLPRPKTHFSCTFCRSN-----SLDGDNIYASFLNIWESDLENS 69

Query: 68  AKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGL 127
            +  +        K   K QE++   ++++ +A                    SR  D +
Sbjct: 70  IEGPL--------KLEHKVQEQEQYHQVKKTEACSSYS---------------SRDCDTM 129

Query: 128 VQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHS 177
            +K+ E+ M +  D+EQ LD+EEA+HYYSR+ SPVYL IVD+FF D++S
Sbjct: 130 EKKINEMYMTETVDIEQALDVEEALHYYSRISSPVYLNIVDKFFTDLYS 150

[Close]

BLAST of Carg18799 vs. TAIR 10
Match: AT1G15260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-12
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 78  RTSKENMKEQEEQGLPRIRQEKAVKE---KKKQGNTHFRK-----GDVKSCSRRSDGLVQ 137
           R   E+ + Q ++    I  + AV +   +K   N H +K        +   +R D L Q
Sbjct: 49  RRCPEDSQTQTKESYTVICCDTAVADTTHQKSLNNQHKKKPKKVAEPFEDAKKRGDALAQ 108

Query: 138 KMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN 195
           KMK+L M+D  D++  LD+ EA+  YS +RSPVYL+IVD FF D++ EFS P  SAK +N
Sbjct: 109 KMKDLNMVDLRDVDHALDVREALRCYSSIRSPVYLDIVDNFFTDMYYEFSDPRTSAK-IN 168

[Close]

BLAST of Carg18799 vs. TAIR 10
Match: AT3G24535.1 (unknown protein; Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 5.9e-05
Identity = 24/69 (34.78%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 130 KMKELEMLDRGDMEQE----LDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASA 189
           K+KE+E +   D+  +     D+ E +H YSRLR   YL++V+ FFM+++S+F  P    
Sbjct: 105 KLKEMEKMMNDDIISDEYYVSDVIEFLHCYSRLRYTAYLDVVENFFMEVYSDFFSPHHLV 164

Query: 190 KSMNSSKRR 195
            +  + +RR
Sbjct: 165 GTRTAVQRR 173

The following BLAST results are available for this feature:

BLAST of Carg18799 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593457.1	7.5e-103	100.00	hypothetical protein SDJN03_12933, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023000396.1	1.6e-100	97.44	uncharacterized protein LOC111494654 [Cucurbita maxima]	[more]
XP_038900276.1	6.6e-75	75.24	uncharacterized protein LOC120087356 [Benincasa hispida]	[more]
XP_016902859.1	7.4e-74	74.76	PREDICTED: uncharacterized protein LOC107991904 [Cucumis melo] >KAA0059298.1 put...	[more]
XP_031744975.1	6.2e-73	73.79	uncharacterized protein LOC116405196 [Cucumis sativus] >KGN45372.1 hypothetical ...	[more]

BLAST of Carg18799 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18799 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFS0	7.6e-101	97.44	uncharacterized protein LOC111494654 OS=Cucurbita maxima OX=3661 GN=LOC111494654...	[more]
A0A5D3BXY4	3.6e-74	74.76	Putative ATP-dependent RNA helicase DDX11 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S4E3Q5	3.6e-74	74.76	uncharacterized protein LOC107991904 OS=Cucumis melo OX=3656 GN=LOC107991904 PE=...	[more]
A0A0A0KAF5	3.0e-73	73.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446870 PE=4 SV=1	[more]
A0A6J1DP45	2.0e-72	74.76	uncharacterized protein LOC111022197 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Carg18799 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16070.1	7.7e-13	29.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15260.1	1.0e-12	39.20	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G24535.1	5.9e-05	34.78	unknown protein; Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..121
None	No IPR available	PANTHER	PTHR35461:SF1	LOW PROTEIN: ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN	coord: 4..195
None	No IPR available	PANTHER	PTHR35461	BNAANNG14610D PROTEIN	coord: 4..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18799-RA	Carg18799-RA	mRNA