Carg18798 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18798
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein L37
Location	Carg_Chr08: 3840716 .. 3841644 (+)
RNA-Seq Expression	Carg18798
Synteny	Carg18798

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCTCGATTAATCTACAGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCCCGCAAGCGAAAGTGTAAGCACACTCGATGTTTCGCCTTTTTCGTCACTGTTCACTTTCTATAATTCGGTTTAAATCGACTATTTTGACGTTTGTTTATTTTGATTCAATGTAATGCTGCCTTGAGTAACCATTGATGTGTATGGTAGTTAGTTGCTAGTGTTGTGTATTAAGCCTGATAAGATGGTTGAGTCTGCGAATGTGAATGAGGTTCATTTGTTCGCTGGAGTAACGTGAAGTGATCATATTGATTTTGGTTTTCCGTGGAGATTGAATTAATCTTGATTCATTTCGTTGGCGTTGGGATTATTTAGATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTATGATATTGTATTTGTAATTGATTCAATTTTTCGCACCATTTACTGCATTTACGTACTGGGTTTCAGAATTACCTGGGTTTTCATGCCTTGAAATTGCTTTGTGTTTGTCATTAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAAGGTTTTGGAAGGAGTTCAACTTAATTTCAGTTCCCAACTATAGCTTTCAGTAGGGGCTTTACTCGTCTGAGGATCATTTCATATAATTTTGTTTTCTAGTTTTGCCTTTTCATGATTTAGTTGAACGCGGTTTCTTTAATATTTAATGTTTTGAAATTTGGACAAAGATGAATCAGATTATTCGTACTCTGGTACTTGTTTTTGTGCT

mRNA sequence

CTTGCTCGATTAATCTACAGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCCCGCAAGCGAAAATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAAGGTTTTGGAAGGAGTTCAACTTAATTTCAGTTCCCAACTATAGCTTTCAGTAGGGGCTTTACTCGTCTGAGGATCATTTCATATAATTTTGTTTTCTAGTTTTGCCTTTTCATGATTTAGTTGAACGCGGTTTCTTTAATATTTAATGTTTTGAAATTTGGACAAAGATGAATCAGATTATTCGTACTCTGGTACTTGTTTTTGTGCT

Coding sequence (CDS)

CTTGCTCGATTAATCTACAGGGTAAGGGTACGGGAAGTTTTGGTAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGCGGCCGCCGCAGCTTCCATCTCCAGAAGAGTCGGTGTTCAGCATGTGCTTTCCCTGCTGCCCGCAAGCGAAAATAACTGGAGTGTGAAGGCCATTAGGAGAAAGACAACCGGAACTGGAAGGATGAGGTACATGCGCCATGTTCCGCGTAGATTCAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCAGGAACAAGGGAGCTGCAGCATCAGCATAA

Protein sequence

LARLIYRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA

Homology

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: KAG7025798.1 (60S ribosomal protein L37-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   LARLIYRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIR 60
           LARLIYRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIR
Sbjct: 1   LARLIYRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIR 60

Query: 61  RKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           RKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA
Sbjct: 61  RKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 100

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: KAB1218567.1 (60S ribosomal protein L37 [Morella rubra])

HSP 1 Score: 124.0 bits (310), Expect = 7.2e-25
Identity = 72/107 (67.29%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 4   LIYRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPA----------SENN 63
           LI RVR +  LVRGGTRP     G AAAASISRRV    V   LPA          +++N
Sbjct: 16  LISRVREQGALVRGGTRPTPFALGVAAAASISRRVAAPPVPIPLPARGHNCCCGWVTDDN 75

Query: 64  WSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           WSVKAIRRKTTGTGRMRY+RH+PRRFKSGFREGTEAAPR KGAAA+A
Sbjct: 76  WSVKAIRRKTTGTGRMRYLRHLPRRFKSGFREGTEAAPRKKGAAATA 122

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: KAA3489293.1 (60S ribosomal protein L37-3 [Gossypium australe])

HSP 1 Score: 117.9 bits (294), Expect = 5.2e-23
Identity = 69/96 (71.88%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 7   RVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLL--PASENNWSVKAIRRKTT 66
           R R + VLV+ GTRP LS    AA ASISRR     VLSLL      NNWSVKAIRRKTT
Sbjct: 3   REREQGVLVKEGTRPTLSALDVAAVASISRRAVALPVLSLLLVRGHVNNWSVKAIRRKTT 62

Query: 67  GTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           GTGRMRY+RHVPRRFK+GFREGTEAAPR K AAASA
Sbjct: 63  GTGRMRYLRHVPRRFKTGFREGTEAAPRKKVAAASA 98

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: PPD83667.1 (hypothetical protein GOBAR_DD19392 [Gossypium barbadense])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 68/104 (65.38%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 7   RVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPA----------SENNWSV 66
           R R + VLV+ GTRP LS  G  A ASISRRV    VLSLL +            +NWSV
Sbjct: 3   REREQGVLVKEGTRPTLSALGVVAVASISRRVIALPVLSLLLSLNLRGFALLWDSDNWSV 62

Query: 67  KAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           KA RRKTTGTGRMRY+ HVPRRFK+GFREGTEAAPRNK AAASA
Sbjct: 63  KANRRKTTGTGRMRYLLHVPRRFKTGFREGTEAAPRNKVAAASA 106

[Close]

BLAST of Carg18798 vs. NCBI nr
Match: OIW03817.1 (hypothetical protein TanjilG_30093 [Lupinus angustifolius])

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 6   YRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIRRKTTG 65
           +R R + V VRG TRP LSV G AAAAS S+RV     L+L PA  N     AIRRKTTG
Sbjct: 9   HRGREQGVSVRGETRPTLSVSGVAAAASTSKRVVAPLALTLPPAFAN-----AIRRKTTG 68

Query: 66  TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           TGRMRY+RHVPRRFKSGFREGTEAAPR KGAAA+A
Sbjct: 69  TGRMRYLRHVPRRFKSGFREGTEAAPRKKGAAATA 98

[Close]

BLAST of Carg18798 vs. ExPASy Swiss-Prot
Match: Q43292 (60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 9.8e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of Carg18798 vs. ExPASy Swiss-Prot
Match: Q8LEM8 (60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of Carg18798 vs. ExPASy Swiss-Prot
Match: P49212 (60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum OX=4081 GN=RPL37 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKA+RRKTTGTGRMRY+R+VPRRFK+ FREGTEAAPR KG AA++
Sbjct: 17  NWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTEAAPRKKGTAAAS 64

[Close]

BLAST of Carg18798 vs. ExPASy Swiss-Prot
Match: Q8LFH7 (60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.0e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]

BLAST of Carg18798 vs. ExPASy Swiss-Prot
Match: Q9VXX8 (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37a PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.5e-09
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 53 NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAA 98
          NWSVKA RRKTTGTGRM++++ V RRF++GFREGT+A P+   A+
Sbjct: 48 NWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92

[Close]

BLAST of Carg18798 vs. ExPASy TrEMBL
Match: A0A6A1W379 (60S ribosomal protein L37 OS=Morella rubra OX=262757 GN=CJ030_MR3G026447 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.5e-25
Identity = 72/107 (67.29%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 4   LIYRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPA----------SENN 63
           LI RVR +  LVRGGTRP     G AAAASISRRV    V   LPA          +++N
Sbjct: 16  LISRVREQGALVRGGTRPTPFALGVAAAASISRRVAAPPVPIPLPARGHNCCCGWVTDDN 75

Query: 64  WSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           WSVKAIRRKTTGTGRMRY+RH+PRRFKSGFREGTEAAPR KGAAA+A
Sbjct: 76  WSVKAIRRKTTGTGRMRYLRHLPRRFKSGFREGTEAAPRKKGAAATA 122

[Close]

BLAST of Carg18798 vs. ExPASy TrEMBL
Match: A0A5B6X6B2 (60S ribosomal protein L37-3 OS=Gossypium australe OX=47621 GN=rpl37 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 69/96 (71.88%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 7   RVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLL--PASENNWSVKAIRRKTT 66
           R R + VLV+ GTRP LS    AA ASISRR     VLSLL      NNWSVKAIRRKTT
Sbjct: 3   REREQGVLVKEGTRPTLSALDVAAVASISRRAVALPVLSLLLVRGHVNNWSVKAIRRKTT 62

Query: 67  GTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           GTGRMRY+RHVPRRFK+GFREGTEAAPR K AAASA
Sbjct: 63  GTGRMRYLRHVPRRFKTGFREGTEAAPRKKVAAASA 98

[Close]

BLAST of Carg18798 vs. ExPASy TrEMBL
Match: A0A4P1R754 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_30093 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 6   YRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIRRKTTG 65
           +R R + V VRG TRP LSV G AAAAS S+RV     L+L PA  N     AIRRKTTG
Sbjct: 9   HRGREQGVSVRGETRPTLSVSGVAAAASTSKRVVAPLALTLPPAFAN-----AIRRKTTG 68

Query: 66  TGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           TGRMRY+RHVPRRFKSGFREGTEAAPR KGAAA+A
Sbjct: 69  TGRMRYLRHVPRRFKSGFREGTEAAPRKKGAAATA 98

[Close]

BLAST of Carg18798 vs. ExPASy TrEMBL
Match: A0A5C7IJ18 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003994 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.8e-21
Identity = 69/110 (62.73%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 6   YRVRVREVLVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASEN------------- 65
           YR R + VLVRGGTR  L V  AA AASI RRV    V   L A E+             
Sbjct: 139 YREREQVVLVRGGTRHTLCVFVAAVAASIFRRVDALLVPIPLLAREHEIEYVNSRVGFII 198

Query: 66  --NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
             NWSVKAIRRKTTGTGRM+Y+R+VPRRFKSGFREGTEAAPR KGAAA+A
Sbjct: 199 EYNWSVKAIRRKTTGTGRMKYLRNVPRRFKSGFREGTEAAPRKKGAAAAA 248

[Close]

BLAST of Carg18798 vs. ExPASy TrEMBL
Match: A0A4D6N8F2 (Large subunit ribosomal protein L37e OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g799 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.4e-19
Identity = 58/87 (66.67%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 14  LVRGGTRPILSVCGAAAAASISRRVGVQHVLSLLPASENNWSVKAIRRKTTGTGRMRYMR 73
           LVRGGTRP  SV   A A S SR+               NWSVKAIRRKTTGTGRMRY+R
Sbjct: 8   LVRGGTRPTPSVSDVAVAVSTSRKY--------------NWSVKAIRRKTTGTGRMRYLR 67

Query: 74  HVPRRFKSGFREGTEAAPRNKGAAASA 101
           HVPRRFKSGFREGTEAAPR +GAA +A
Sbjct: 68  HVPRRFKSGFREGTEAAPRKRGAATTA 80

[Close]

BLAST of Carg18798 vs. TAIR 10
Match: AT1G52300.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 87.4 bits (215), Expect = 7.0e-18
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+GFREGTEA PRNKG A+SA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of Carg18798 vs. TAIR 10
Match: AT3G16080.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+GFREGTEA PR+K +A+SA
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of Carg18798 vs. TAIR 10
Match: AT1G15250.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 81.3 bits (199), Expect = 5.0e-16
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 53  NWSVKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTEAAPRNKGAAASA 101
           NWSVKAIRRKTTGTGRMRY+R+VPRRFK+ FREGT+A PRNK AA+S+
Sbjct: 48  NWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

The following BLAST results are available for this feature:

BLAST of Carg18798 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025798.1	1.1e-44	100.00	60S ribosomal protein L37-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAB1218567.1	7.2e-25	67.29	60S ribosomal protein L37 [Morella rubra]	[more]
KAA3489293.1	5.2e-23	71.88	60S ribosomal protein L37-3 [Gossypium australe]	[more]
PPD83667.1	1.3e-21	65.38	hypothetical protein GOBAR_DD19392 [Gossypium barbadense]	[more]
OIW03817.1	3.7e-21	69.47	hypothetical protein TanjilG_30093 [Lupinus angustifolius]	[more]

BLAST of Carg18798 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43292	9.8e-17	87.50	60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2	[more]
Q8LEM8	1.4e-15	83.33	60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1	[more]
P49212	2.4e-15	81.25	60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum OX=4081 GN=RPL37 PE...	[more]
Q8LFH7	7.0e-15	81.25	60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1	[more]
Q9VXX8	7.5e-09	64.44	Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37...	[more]

BLAST of Carg18798 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1W379	3.5e-25	67.29	60S ribosomal protein L37 OS=Morella rubra OX=262757 GN=CJ030_MR3G026447 PE=4 SV...	[more]
A0A5B6X6B2	2.5e-23	71.88	60S ribosomal protein L37-3 OS=Gossypium australe OX=47621 GN=rpl37 PE=4 SV=1	[more]
A0A4P1R754	1.8e-21	69.47	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_30093 PE=4 S...	[more]
A0A5C7IJ18	6.8e-21	62.73	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003994 PE=4 SV=1	[more]
A0A4D6N8F2	6.4e-19	66.67	Large subunit ribosomal protein L37e OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g...	[more]

BLAST of Carg18798 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52300.1	7.0e-18	87.50	Zinc-binding ribosomal protein family protein	[more]
AT3G16080.1	1.0e-16	83.33	Zinc-binding ribosomal protein family protein	[more]
AT1G15250.1	5.0e-16	81.25	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 20..92 e-value: 5.8E-19 score: 70.1
None	No IPR available	PANTHER	PTHR10768:SF31	RIBOSOMAL PROTEIN L37	coord: 52..99
None	No IPR available	PANTHER	PTHR10768	60S RIBOSOMAL PROTEIN L37	coord: 52..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18798-RA	Carg18798-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome