Carg18792 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18792
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTCP domain-containing protein
LocationCarg_Chr08: 3862611 .. 3865345 (+)
RNA-Seq ExpressionCarg18792
SyntenyCarg18792
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGTCCAATTGCGGCATCCGCAACATCGTCGGTCAACACATCGGGTGTATTAGTAACCCTAATTCCCTTCTCCCGGCACTTCGGCAAATCAATTTTGTCTAGTCCCACACTGAAGCTCGCTACGATTTCCAACGCCGGAAAAGTGTCGATTAAATTGGCGTCGGCGCCGATCTTGGTACAGCCGACTACTGCTCTGATCGATTTCGCGTTTTGTTGAAGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGATTGAAGCGTTGTTCAAGCTGTTTTTCGAGGTAACTGAACATTGGAGTGGTCATTGCAACTCCTATCTTCTCCATTTTCAGCGCAGCAAAATGTTCCAGCGCACTGCAACAATTCCCAAACATATGGGAGCAATTTTGAAATTTCCTTTTGTACTTTTTGAAGAGTAATTTTTTTTTTTAATTAATTCTTTTTTTAATAAACTGTTCTAGCTATTTAATTCCCTCTTATTTATTTGTTTTAGTCAAACAAACATGGATCATCCAAATGCGGTACAAAGTGACGTTTATTGATCACTTCTCGAGATAGATTATAGCAATATAAAAACATTATTGTTTATAGTGAAACTTCATAACTCCACATAACTCATAGCTCCAAACACACACTCCTTAAACTCAGACTCAAGTCACGGGAGTAAGTAGAGGCTCATTCCTGAAATGTGCCTCCAAGTTTCGAATCACAAGGTCGGCCATTGCAGTGCTGGTCTCGTTGGTATCGGATGCGACGTGAGGCAATAGAACTACATTTTGAAGCTGAAGCAACTGTTTAGGTACATGGGGCTCGTTTTCATATACATCTAGTCCTGCCCCAGCCAAACGACCATCGAGCAGCGCAGAGACGAGCTCAGATTCATCGACGTGAGCACCTCGTCCAATGTTGATAAGAAAGCCATGTGGCCCCAATGCATCGATTACTTGTCGATTGATAATGTGCTTAGTTTGTTGGGTGAGATTGCATGCCACGAACAGAAATTGGGAGTTTGCAGCCAAGTCTAGGACGGTGGGAAAGTATTTGTAAACACTGTGATGCTTATCATTCCTACTGCAATAACTGATGGAGCACCCAAATGCTTCAGCTCTCTTGGCAATGGCTGAACCGATCCTTCCCAACCCAACAATTCCTACTGATTTTCGACTGAACTGAAATACACAACCACTACTGAATCAAGTAAAATTATTTAGATTTACATCCACATTCTTGTTTTTTTAATAAAAAATAAGAGGTTAGTTTTAAAATATTTATTTTTTTTTTAAACATTTAATTAAGATTTATTATTATATTTTTTAAATAATTAAAATTCTATTTTTTAAGATGGTGGAAGAATAAAGAACTGTACGCAAGAAAAAAATGTATTTTTAAAAAGAAATTAACTATTTGACTTGATAAAAATAAATAATTGAGTACTGTTTCGAAAGTTAAATTAATAAAAATATCCCTAAACTTTATATCAAAAATACTAGTAAACTTTTAAAAATTTCAATGATATTTTTAAACATTAAAAAATCTCAAAAATATATTTGGAATAGAAATAGTTAATAATTTATTTAAAAAATATCCTTAAATTTTTAATAAAATTTAAAAAATACTCTTAAAAAGTTCAAAAATATCATTATCGTTAGTACTACGTTTAAAAAATATCATTATTGTTACCGTTGGTATATATTTAAAAAAATTAGAAAATACTATTATCGTTAGTACTATATTTAAAGAATATACGAAATTTCTAAAGTAAAAAATATCATTGATACTCTTTTACTTTATATATATATATATAAAATAAAAAATACACATCCCATAAATTATTTTCAAATTTTTTAATATTACTTTTGAAATTTCTTTAATATTTTTTAAACCTAATACTTGCCGCAAATATATATTTAAAGTTTTTTTAAACGTATTAATAAATTTTTTAAACTTAAAAATATTTAAAAAATACTTTTCATGACTAAAGGGTATTTTTTAAATCCTAAAAAACGTTCAAGAGTATTATAAAAAGGAAGTATTTATTTTTGAACTTTTTATACCGTTTAAGGATATTTTTGTAATTTAACCTATTCCTACCCATCAAATAATCAGCGCAATCTCTCCTCTGTATTTATGCACAAACAAATGCAAAGCATACCTTCGTTCCCAAACCAAAATCGCCTTTGGTCCACGATCCACTCCGGACGAACCGATCGCACTCACAAATCCTCCTCGAAACCGCAATGGCCAGACCAATTGCGGCATCGGCGACATCGTCGGTCAACACATCGGGTGTATTGGTAACCCTAATCCCCTTCTCCACGCATTTCGCCAAATCAATTTTGTCGATTCCTACACTGAAGCTCGCTACGACTTCCAAAGCCGGCAAAGCGTCGATCAAATTAGCATCGGCACCGGAACTGGAACTGACGACTACTGCTCTGATCGATTGCGCGTTTTGCTGAAGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGATTGAAACGTTTTTCAAGCTGTTTTTCGAGGTAACTCACCATTGGATCGGTCATTGCAACTCCTATCTTCTCCATTTTTAGGGCACCAAAAAAGCTTCGGCGGATTGCAGCAATTTTCTCAAATATGAGAGCTCTTTAGGGATTTTGCTTTGTGATCTGTTTAAGAGTAAAGTTCGTTCGTTTTATATTATTATTCTTTTAGATTCTTTTTTCTATTTATTAA

mRNA sequence

ATGGCCAGTCCAATTGCGGCATCCGCAACATCGTCGGTCAACACATCGGGTGTATTAGTAACCCTAATTCCCTTCTCCCGGCACTTCGGCAAATCAATTTTGTCTAGTCCCACACTGAAGCTCGCTACGATTTCCAACGCCGGAAAAGTGTCGATTAAATTGGCGTCGGCGCCGATCTTGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGATTGAAGCGTTGTTCAAGCTGTTTTTCGAGATTCTTTTTTCTATTTATTAA

Coding sequence (CDS)

ATGGCCAGTCCAATTGCGGCATCCGCAACATCGTCGGTCAACACATCGGGTGTATTAGTAACCCTAATTCCCTTCTCCCGGCACTTCGGCAAATCAATTTTGTCTAGTCCCACACTGAAGCTCGCTACGATTTCCAACGCCGGAAAAGTGTCGATTAAATTGGCGTCGGCGCCGATCTTGGTAATCGGAGTTGAGAGGATGAATCCAGAGCTTGAAGAGATTGAAGCGTTGTTCAAGCTGTTTTTCGAGATTCTTTTTTCTATTTATTAA

Protein sequence

MASPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVIGVERMNPELEEIEALFKLFFEILFSIY
Homology
[Close]
BLAST of Carg18792 vs. NCBI nr
Match: KAG7025805.1 (hypothetical protein SDJN02_12303, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 8.1e-36
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MASPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPIL 60
          MASPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPIL
Sbjct: 1  MASPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPIL 60

Query: 61 VIGVERMNPELEEIEALFKLFFEILFSIY 90
          VIGVERMNPELEEIEALFKLFFEILFSIY
Sbjct: 61 VIGVERMNPELEEIEALFKLFFEILFSIY 89

[Close]
BLAST of Carg18792 vs. NCBI nr
Match: PLY83525.1 (hypothetical protein LSAT_8X122100 [Lactuca sativa])

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08
Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA SATSSVNTSGVLVTLIPF     KS LS+PTLKL TIS AG  SI   SAP L  
Sbjct: 200 NPIAKSATSSVNTSGVLVTLIPFCLQCPKSTLSNPTLKLDTISKAGNESINSRSAPALAF 259

Query: 63  -GVERMNPELEEIEALF 79
               R+ PE    ++ F
Sbjct: 260 PTTARIEPEFSLKKSFF 276

[Close]
BLAST of Carg18792 vs. NCBI nr
Match: KAF7822241.1 (U3 small nucleolar RNA-associated protein 18-like protein [Senna tora])

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 8  SATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGK--VSIKLASAPILVIGVE 67
          S TSSVNTSGV VT IPFS H  KSI S+PTLKL  IS+ GK  +S   ASA +    +E
Sbjct: 4  SVTSSVNTSGVFVTRIPFSLHLFKSIESTPTLKLYMISSLGKALMSSASASAFLTTTRME 63

Query: 68 RMNPELEEIEALFKLFFEI 85
           + PE EE+EAL KL  E+
Sbjct: 64 WVIPEAEEVEALIKLLLEV 82

[Close]
BLAST of Carg18792 vs. NCBI nr
Match: PLY78083.1 (hypothetical protein LSAT_1X4641 [Lactuca sativa])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 44/78 (56.41%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA SATSSVNTSGVLVTLIPF     KS  S+PTLKL TI  AG  SI   SAP L  
Sbjct: 102 NPIAKSATSSVNTSGVLVTLIPFCLQCPKSTFSNPTLKLDTIPKAGNESINSRSAPALAF 161

Query: 63  GVERMNPELEEIEALFKL 81
                 P    IE  F L
Sbjct: 162 ------PTTSRIEPKFSL 173

[Close]
BLAST of Carg18792 vs. NCBI nr
Match: CAB4091996.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-07
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA  ATSSV+TSGVL+TLIPF     +S LS+PTLKL TIS AG  SI   SAP L  
Sbjct: 47  NPIAKLATSSVSTSGVLITLIPFCLQCPQSTLSNPTLKLDTISKAGNESINSRSAPTLAF 106

Query: 63  GV-ERMNPE 71
            +  R+ PE
Sbjct: 107 PITARIEPE 115

[Close]
BLAST of Carg18792 vs. ExPASy TrEMBL
Match: A0A2J6L866 (TCP domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_8X122100 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 45/77 (58.44%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA SATSSVNTSGVLVTLIPF     KS LS+PTLKL TIS AG  SI   SAP L  
Sbjct: 200 NPIAKSATSSVNTSGVLVTLIPFCLQCPKSTLSNPTLKLDTISKAGNESINSRSAPALAF 259

Query: 63  -GVERMNPELEEIEALF 79
               R+ PE    ++ F
Sbjct: 260 PTTARIEPEFSLKKSFF 276

[Close]
BLAST of Carg18792 vs. ExPASy TrEMBL
Match: A0A2P2NPS4 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 6   AASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 63
           + SATSSV T GVLVTLIPFS HF KSILS+PTL++AT S  G+ SI    APILV+
Sbjct: 59  SVSATSSVKTWGVLVTLIPFSSHFPKSILSNPTLQVATFSKLGRASISSTLAPILVL 115

[Close]
BLAST of Carg18792 vs. ExPASy TrEMBL
Match: A0A2J6KSN2 (TCP domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_1X4641 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 44/78 (56.41%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA SATSSVNTSGVLVTLIPF     KS  S+PTLKL TI  AG  SI   SAP L  
Sbjct: 102 NPIAKSATSSVNTSGVLVTLIPFCLQCPKSTFSNPTLKLDTIPKAGNESINSRSAPALAF 161

Query: 63  GVERMNPELEEIEALFKL 81
                 P    IE  F L
Sbjct: 162 ------PTTSRIEPKFSL 173

[Close]
BLAST of Carg18792 vs. ExPASy TrEMBL
Match: A0A6S7MV07 (TCP domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS19851 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.8e-07
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 3   SPIAASATSSVNTSGVLVTLIPFSRHFGKSILSSPTLKLATISNAGKVSIKLASAPILVI 62
           +PIA  ATSSV+TSGVL+TLIPF     +S LS+PTLKL TIS AG  SI   SAP L  
Sbjct: 47  NPIAKLATSSVSTSGVLITLIPFCLQCPQSTLSNPTLKLDTISKAGNESINSRSAPTLAF 106

Query: 63  GV-ERMNPE 71
            +  R+ PE
Sbjct: 107 PITARIEPE 115

The following BLAST results are available for this feature:
BLAST of Carg18792 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025805.18.1e-36100.00hypothetical protein SDJN02_12303, partial [Cucurbita argyrosperma subsp. argyro... [more]
PLY83525.12.4e-0858.44hypothetical protein LSAT_8X122100 [Lactuca sativa][more]
KAF7822241.12.4e-0856.96U3 small nucleolar RNA-associated protein 18-like protein [Senna tora][more]
PLY78083.16.0e-0756.41hypothetical protein LSAT_1X4641 [Lactuca sativa][more]
CAB4091996.17.9e-0757.97unnamed protein product [Lactuca saligna][more]
BLAST of Carg18792 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18792 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2J6L8661.2e-0858.44TCP domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_8X122100 PE=4 SV... [more]
A0A2P2NPS43.5e-0866.67Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A2J6KSN22.9e-0756.41TCP domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_1X4641 PE=4 SV=1[more]
A0A6S7MV073.8e-0757.97TCP domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS19851 PE=... [more]
BLAST of Carg18792 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18792-RACarg18792-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050789 regulation of biological process