Carg18788 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18788
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	30S ribosomal protein S17, chloroplastic
Location	Carg_Chr08: 3873184 .. 3873875 (+)
RNA-Seq Expression	Carg18788
Synteny	Carg18788

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCAACTCTAAATCCCTCGTCCGTCCTGCAAATTCCTCCATTACAGAGATTCAAGAAGCTCTCACTTTCCACCACTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCTGCATCCTCGCCTCCCCAAACTCTCAATTTCCTCCCCTCCATTAGGGCGATGAAGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAGACCGTTGCCGTCGAAGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAGAAATGCCGGCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCAAGGAATTCGAAGCAGAAGGTGGCGGAAGCTGCGGCTGGGGACCTTGGGATTCCATTGGAGTCTCAGCAACAGGTTTAATCGTAATCGTAATCGTAATCGGTTGCGTTTTGTAGATCTATTCTTGTTTCTGGTCAATGAATGATTGAAGATTGTTTGATGAATGTTGTTTTCCAAATTCTTAGAATCTCTATTCGTCTCTGCAATTGATGCGTCTGAACAGTGAGATAACTGCCGATGATTATGGTGTGGTATTGTTCCCGTCCAAATTCTCTTTATTCTTGCGTTTGGTCTAG

mRNA sequence

ATGTTTGCAACTCTAAATCCCTCGTCCGTCCTGCAAATTCCTCCATTACAGAGATTCAAGAAGCTCTCACTTTCCACCACTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCTGCATCCTCGCCTCCCCAAACTCTCAATTTCCTCCCCTCCATTAGGGCGATGAAGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAGACCGTTGCCGTCGAAGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAGAAATGCCGGCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCAAGGAATTCGAAGCAGAAGGTGGCGGAAGCTGCGGCTGGGGACCTTGGGATTCCATTGGAGTCTCAGCAACAGAATCTCTATTCGTCTCTGCAATTGATGCGTCTGAACAGTGAGATAACTGCCGATGATTATGGTGTGGTATTGTTCCCGTCCAAATTCTCTTTATTCTTGCGTTTGGTCTAG

Coding sequence (CDS)

ATGTTTGCAACTCTAAATCCCTCGTCCGTCCTGCAAATTCCTCCATTACAGAGATTCAAGAAGCTCTCACTTTCCACCACTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCTGCATCCTCGCCTCCCCAAACTCTCAATTTCCTCCCCTCCATTAGGGCGATGAAGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAGACCGTTGCCGTCGAAGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAGAAATGCCGGCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCAAGGAATTCGAAGCAGAAGGTGGCGGAAGCTGCGGCTGGGGACCTTGGGATTCCATTGGAGTCTCAGCAACAGAATCTCTATTCGTCTCTGCAATTGATGCGTCTGAACAGTGAGATAACTGCCGATGATTATGGTGTGGTATTGTTCCCGTCCAAATTCTCTTTATTCTTGCGTTTGGTCTAG

Protein sequence

MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQNLYSSLQLMRLNSEITADDYGVVLFPSKFSLFLRLV

Homology

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BLAST of Carg18788 vs. NCBI nr
Match: KAG6593467.1 (30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025808.1 30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.4 bits (960), Expect = 5.9e-100
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKS 60
           MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKS
Sbjct: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQNLYSSLQLMRLNSEITADDYGVV 180
           SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQNLYSSLQLMRLNSEITADDYGVV
Sbjct: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQNLYSSLQLMRLNSEITADDYGVV 180

Query: 181 LFPSKFSLFLRLV 194
           LFPSKFSLFLRLV
Sbjct: 181 LFPSKFSLFLRLV 193

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BLAST of Carg18788 vs. NCBI nr
Match: XP_022964008.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 303.1 bits (775), Expect = 1.7e-78
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKS 60
           MFATLNPSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKS
Sbjct: 1   MFATLNPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAPSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 158
           SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
Sbjct: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 157

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BLAST of Carg18788 vs. NCBI nr
Match: XP_023513636.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 4.9e-78
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKS 60
           MFATLNPSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKS
Sbjct: 1   MFATLNPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAPSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 158
           SKMKTFLAIPVPARNSK+KVAEAAAGDLGIPLESQQQ
Sbjct: 121 SKMKTFLAIPVPARNSKKKVAEAAAGDLGIPLESQQQ 157

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BLAST of Carg18788 vs. NCBI nr
Match: XP_023000403.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 300.8 bits (769), Expect = 8.3e-78
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKS 60
           MFATL PSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKS
Sbjct: 1   MFATLTPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAPSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 158
           SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
Sbjct: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 157

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BLAST of Carg18788 vs. NCBI nr
Match: XP_023548191.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.1 bits (671), Expect = 1.9e-66
Identity = 137/159 (86.16%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPAS--SPPQTLNFLPSIRAM 60
           M ATL+PSS LQIPPLQR K LS+ST+FLHGS PLSFLSKP+   S  QT NFLPSI+AM
Sbjct: 1   MSATLSPSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAM 60

Query: 61  KSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 120
           +SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCR
Sbjct: 61  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCR 120

Query: 121 PISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 158
           PISKMKTFLAIPVPARNSK K AEA AG+LGIPLESQQQ
Sbjct: 121 PISKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQQ 159

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BLAST of Carg18788 vs. ExPASy Swiss-Prot
Match: P16180 (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS17 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.1e-43
Identity = 97/137 (70.80%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 22  LSLSTTFLHGSTPLSFLSKPASSPPQTLNFL-PSIRAMKSLQGRVVCATNDKTVAVEVVR 81
           L LS+ F HGSTPLS LSKP S P   +  L P IRAMK++QGRVVCAT+DKTVAVEVVR
Sbjct: 13  LKLSSPFAHGSTPLSSLSKPNSFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVR 72

Query: 82  LAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKV 141
           LAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPISK K+F+A+PV AR +++  
Sbjct: 73  LAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAARK-- 132

Query: 142 AEAAAGD-LGIPLESQQ 157
           AEA   + LG+PLESQQ
Sbjct: 133 AEAGGDELLGLPLESQQ 147

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BLAST of Carg18788 vs. ExPASy Swiss-Prot
Match: P82137 (30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 3.9e-38
Identity = 92/155 (59.35%), Postives = 107/155 (69.03%), Query Frame = 0


Query: 14  PPLQRFKKLSLSTTFLHGST----------PLSFLSKPASSPPQTLNFLPSIRAMKSLQG 73
           PPL      S    FLHG+T           LS  S P SS   T    P I+AM+S+QG
Sbjct: 10  PPLSS----SNPNPFLHGTTTKLSLLPSFSALSLSSSPPSS--STTYTFPVIKAMRSMQG 69

Query: 74  RVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKM 133
           +V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDNQFKVGD+V+L+KCRPISK 
Sbjct: 70  KVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPISKT 129

Query: 134 KTFLAIPVPARNS---KQKVAEAAAGDLGIPLESQ 156
           KTFLA+    R S   + K  +AA+ +LGIPLESQ
Sbjct: 130 KTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQ 158

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BLAST of Carg18788 vs. ExPASy Swiss-Prot
Match: P17092 (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.1e-35
Identity = 78/127 (61.42%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 35  LSFLSKPASSP---PQTLNF-LPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRR 94
           L+  S P SSP    QT +   P+I+AMK+++G+VVCA+ +KTVAVEV RLAPHPKY++R
Sbjct: 11  LNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKR 70

Query: 95  IRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGI 154
           IR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P P+R SK+     ++G+LGI
Sbjct: 71  IRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK---AGSSGELGI 130

Query: 155 PLESQQQ 158
           PL+SQQ+
Sbjct: 131 PLQSQQE 134

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BLAST of Carg18788 vs. ExPASy Swiss-Prot
Match: Q9ZST1 (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28
Identity = 68/104 (65.38%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 55  IRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVEL 114
           I+A K L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL
Sbjct: 34  IQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVEL 93

Query: 115 EKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQN 159
            + RPISK K FLA+P+P R++++K        L  PL+SQ Q+
Sbjct: 94  RRSRPISKTKHFLAVPLPPRDTRRK------SQLLPPLQSQSQS 131

[Close]

BLAST of Carg18788 vs. ExPASy Swiss-Prot
Match: Q9TJN6 (30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-27
Identity = 71/118 (60.17%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 22  LSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRL 81
           L LS+ F+  S P   LS   + P         I A + L GRVV    DKTV VEVVRL
Sbjct: 2   LLLSSPFVSVSPPPPPLSSHGARPAL------RIEAARQLTGRVVTTKADKTVGVEVVRL 61

Query: 82  APHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQK 140
           APHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  RPISK K FLAIP+P R++++K
Sbjct: 62  APHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRK 113

[Close]

BLAST of Carg18788 vs. ExPASy TrEMBL
Match: A0A6J1HJK0 (30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464160 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 8.1e-79
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKS 60
           MFATLNPSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKS
Sbjct: 1   MFATLNPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAPSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 158
           SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
Sbjct: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 157

[Close]

BLAST of Carg18788 vs. ExPASy TrEMBL
Match: A0A6J1KMI9 (30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494663 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.0e-78
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKS 60
           MFATL PSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKS
Sbjct: 1   MFATLTPSSVLQIPPLQRFKKLSLSTSFLHGSTPLSFLSKPAPSPPQTLNFLPSIRAMKS 60

Query: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
Sbjct: 61  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 120

Query: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 158
           SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
Sbjct: 121 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 157

[Close]

BLAST of Carg18788 vs. ExPASy TrEMBL
Match: A0A6J1GQP3 (30S ribosomal protein S17, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111456201 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.0e-65
Identity = 133/157 (84.71%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 3   ATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPAS--SPPQTLNFLPSIRAMKS 62
           + L+PSS LQIPPLQR K LS+ST+FLHGS PLSFLSKP+   S  QT NFLPSI+AM+S
Sbjct: 2   SALSPSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIKAMRS 61

Query: 63  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI 122
           LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCRPI
Sbjct: 62  LQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPI 121

Query: 123 SKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 158
           SKMKTFLAIPVPARNSK K AEA AG+LGIPLESQ+Q
Sbjct: 122 SKMKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ 158

[Close]

BLAST of Carg18788 vs. ExPASy TrEMBL
Match: A0A6J1JVM9 (30S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488732 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 135/159 (84.91%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPAS--SPPQTLNFLPSIRAM 60
           M ATL+ SS LQIPPLQR K LS+ST+FLHGS PLSFLSKP+   S  QT NFLPSIRAM
Sbjct: 1   MSATLSHSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKPSPSLSASQTPNFLPSIRAM 60

Query: 61  KSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCR 120
           +SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGDFVELEKCR
Sbjct: 61  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCR 120

Query: 121 PISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ 158
           PISKMKTFLAIPVPARNSK K AEA  G+L IPLESQQQ
Sbjct: 121 PISKMKTFLAIPVPARNSKPKAAEAGVGELEIPLESQQQ 159

[Close]

BLAST of Carg18788 vs. ExPASy TrEMBL
Match: A0A1S3CGC8 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.1e-64
Identity = 135/164 (82.32%), Postives = 145/164 (88.41%), Query Frame = 0


Query: 1   MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSP----PQTLNFLPSIR 60
           M  TL  SS+LQIPPLQ  KKLS+S++FLHGSTPLSFLSKP+SSP     QT NFLPSIR
Sbjct: 1   MSTTLTSSSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIR 60

Query: 61  AMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120
           AM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK
Sbjct: 61  AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEK 120

Query: 121 CRPISKMKTFLAIPVPARNSKQKVAEAA-AGDLGIPLESQQQNL 160
           CRPISKMKTFLAIPVPAR SK+K AE    G+LGIPLESQQ+ +
Sbjct: 121 CRPISKMKTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of Carg18788 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-44
Identity = 97/137 (70.80%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 22  LSLSTTFLHGSTPLSFLSKPASSPPQTLNFL-PSIRAMKSLQGRVVCATNDKTVAVEVVR 81
           L LS+ F HGSTPLS LSKP S P   +  L P IRAMK++QGRVVCAT+DKTVAVEVVR
Sbjct: 13  LKLSSPFAHGSTPLSSLSKPNSFPNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVR 72

Query: 82  LAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKV 141
           LAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPISK K+F+A+PV AR +++  
Sbjct: 73  LAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAARK-- 132

Query: 142 AEAAAGD-LGIPLESQQ 157
           AEA   + LG+PLESQQ
Sbjct: 133 AEAGGDELLGLPLESQQ 147

The following BLAST results are available for this feature:

BLAST of Carg18788 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593467.1	5.9e-100	100.00	30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022964008.1	1.7e-78	98.73	30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata]	[more]
XP_023513636.1	4.9e-78	98.09	30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000403.1	8.3e-78	98.09	30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima]	[more]
XP_023548191.1	1.9e-66	86.16	30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg18788 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P16180	3.1e-43	70.80	30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82137	3.9e-38	59.35	30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 P...	[more]
P17092	3.1e-35	61.42	30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=...	[more]
Q9ZST1	1.3e-28	65.38	30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9TJN6	1.8e-27	60.17	30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1	[more]

BLAST of Carg18788 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJK0	8.1e-79	98.73	30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KMI9	4.0e-78	98.09	30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GQP3	3.0e-65	84.71	30S ribosomal protein S17, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JVM9	1.1e-64	84.91	30S ribosomal protein S17, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S3CGC8	1.1e-64	82.32	30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591...	[more]

BLAST of Carg18788 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79850.1	2.2e-44	70.80	ribosomal protein S17	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 119..126 score: 52.75 coord: 109..119 score: 52.55 coord: 77..100 score: 34.25
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 63..126 e-value: 8.8E-24 score: 83.4
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 36..157
None	No IPR available	GENE3D	2.40.50.140		coord: 57..149 e-value: 3.5E-25 score: 89.7
None	No IPR available	PANTHER	PTHR10744:SF7	30S RIBOSOMAL PROTEIN S17, CHLOROPLASTIC	coord: 36..157
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 109..121
IPR019984	30S ribosomal protein S17	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 58..133 score: 17.955606
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 58..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18788-RA	Carg18788-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome