Carg18776 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18776
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	activating signal cointegrator 1 complex subunit 1
Location	Carg_Chr08: 3931137 .. 3932395 (-)
RNA-Seq Expression	Carg18776
Synteny	Carg18776

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATTAATTAATCGTTTATATTTCCATATTTCATCCTTCGCACGTGGAGAAGGTACGTGCGAATTCCTTTCTCGTCCATTATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGTATGATTCATAAAAATGAAAAACTCTGTTTGGATTCCGAGAAAAATGCTCTACAATTCTTGTAATTCTACAAATTTCTGAGCTTATCGCTTTCGTAACAATGCTCGATGTTTGGCTCCATTTTCATCTTTTGAAACGGGATATAACCTAACATTAGTGGATGTTTTGATCAATCAAATAGTTCGAATTCAATCGATTGAGACTGAGAGGAAGTTTTGATCGATGTTACTTGAAAAATTATCAGTTAATCAGAGATATCTAAGCTCAATCCATGGATTGAAAGTTTCGCTCTCTTTATAAGATTCTCTGTTTGCCTGTATTTAATCTGCTGTGCTGCTTTTGTAGAGTCGACCGTCTCTTGAAATGTACAAGTCCGTATATGTCATATAGCAGCTCGTAATCTAGCTCTGAAGCTCATTATATTAACGATTAATTTGAAGTTGGAATGATTTTCTATTAAAAATATGAACGAATTATTGAATATACCATAACTTATCTACTTTGAGTTCAGTTGTTTAGTCGTGATTTAACAATAGATTATCTTCAAGTGAGAGGAAGGGTAGGTCAAGGATATGATTAGATATGCCTTACTTATCAGCTTAAGCTTTAGAGTTGAATAGTAATTTAACACGATCTGAGCCTGAATTTGGATGTTGAAATGATGTTCTTAGTAATAAACTGGTGGTGGACTAGCTTCTAATCCTTATAAAACTGAGTTCTATTCCAATGCGTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAATAGCATATAACTGTAGCCGTGCAGTTTGGGAATTGACAAATCAATATTTATAACCTAAACATTTCATCTAATGGTACTTATGTTTAAGTTGTGGAACAAGGAGTGAGTTGAGGCTGCTTCTGAAGTTCTGAGAGTGATTATACTTACTAACTGGACACTTGTTGTGAGATCCTACCTCGATTGGAGAGGGGAACGAGTGC

mRNA sequence

ATTAATTAATTAATCGTTTATATTTCCATATTTCATCCTTCGCACGTGGAGAAGGTACGTGCGAATTCCTTTCTCGTCCATTATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAATAGCATATAACTGTAGCCGTGCAGTTTGGGAATTGACAAATCAATATTTATAACCTAAACATTTCATCTAATGGTACTTATGTTTAAGTTGTGGAACAAGGAGTGAGTTGAGGCTGCTTCTGAAGTTCTGAGAGTGATTATACTTACTAACTGGACACTTGTTGTGAGATCCTACCTCGATTGGAGAGGGGAACGAGTGC

Coding sequence (CDS)

ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAATAGCATATAA

Protein sequence

MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGMWNLYYNSI

Homology

[Close]

BLAST of Carg18776 vs. NCBI nr
Match: KAG7025820.1 (hypothetical protein SDJN02_12318 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.9 bits (450), Expect = 3.5e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60
          MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ
Sbjct: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60

Query: 61 TWRPVYMHASPSEGMWNLYYNSI 84
          TWRPVYMHASPSEGMWNLYYNSI
Sbjct: 61 TWRPVYMHASPSEGMWNLYYNSI 83

[Close]

BLAST of Carg18776 vs. NCBI nr
Match: KAG6593476.1 (hypothetical protein SDJN03_12952, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.8 bits (390), Expect = 3.2e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60
          MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ
Sbjct: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60

Query: 61 TWRPVYMHASPSE 74
          TWRPVYMHASPSE
Sbjct: 61 TWRPVYMHASPSE 73

[Close]

BLAST of Carg18776 vs. NCBI nr
Match: XP_022149236.1 (uncharacterized protein LOC111017681 isoform X3 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 6.0e-17
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 6  CRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPV 65
          C    D+AG+ANDSLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV
Sbjct: 3  CAVPVDKAGIANDSLQVSFQGHYAYNGLSLYTNMTGRKEFRSAADQKKKRKTISQAWRPV 62

Query: 66 YMHASPSEGM 76
            HASPSE +
Sbjct: 63 CTHASPSEDL 72

[Close]

BLAST of Carg18776 vs. NCBI nr
Match: XP_022954065.1 (uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata])

HSP 1 Score: 97.1 bits (240), Expect = 7.8e-17
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 11 DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVANDSLQVSFQGLY  +GWSL ANM GKKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMAGKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEGM 76
          PSE +
Sbjct: 68 PSEDL 72

[Close]

BLAST of Carg18776 vs. NCBI nr
Match: XP_023549271.1 (activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.7 bits (234), Expect = 3.9e-16
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 11 DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVANDSLQVSFQGLY  +GWSL ANM  KKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMASKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEGM 76
          PSE +
Sbjct: 68 PSEDL 72

[Close]

BLAST of Carg18776 vs. ExPASy TrEMBL
Match: A0A6J1D7S4 (uncharacterized protein LOC111017681 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111017681 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.9e-17
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 6  CRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPV 65
          C    D+AG+ANDSLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV
Sbjct: 3  CAVPVDKAGIANDSLQVSFQGHYAYNGLSLYTNMTGRKEFRSAADQKKKRKTISQAWRPV 62

Query: 66 YMHASPSEGM 76
            HASPSE +
Sbjct: 63 CTHASPSEDL 72

[Close]

BLAST of Carg18776 vs. ExPASy TrEMBL
Match: A0A6J1GRE7 (uncharacterized protein LOC111456441 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456441 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.8e-17
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 11 DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVANDSLQVSFQGLY  +GWSL ANM GKKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMAGKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEGM 76
          PSE +
Sbjct: 68 PSEDL 72

[Close]

BLAST of Carg18776 vs. ExPASy TrEMBL
Match: A0A0A0K963 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 44/90 (48.89%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 2   LNDLCRSGRDQAGVANDSLQVSFQ----------------GLYADDGWSLKANMTGKKEF 61
           LN LC SGR    +     +  F+                GLYA +GW L ANMTGK EF
Sbjct: 44  LNALCSSGRQSQSLRMIVCRSLFRVDRFLKYTAPFVLHQTGLYAYNGWRLNANMTGKTEF 103

Query: 62  WSAADQKKKPKTVSQTWRPVYMHASPSEGM 76
            SAADQKKK KT+SQ WRPV  HA PSE +
Sbjct: 104 RSAADQKKKRKTISQAWRPVCTHACPSEDL 133

[Close]

BLAST of Carg18776 vs. ExPASy TrEMBL
Match: A0A5D3C0W5 (Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002070 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 26  GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM 76
           GLYA +GW L ANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE +
Sbjct: 62  GLYAYNGWRLNANMTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDL 111

[Close]

BLAST of Carg18776 vs. ExPASy TrEMBL
Match: A0A1S3CGC2 (activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103500600 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 26 GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM 76
          GLYA +GW L ANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE +
Sbjct: 38 GLYAYNGWRLNANMTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDL 87

The following BLAST results are available for this feature:

BLAST of Carg18776 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025820.1	3.5e-41	100.00	hypothetical protein SDJN02_12318 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6593476.1	3.2e-34	100.00	hypothetical protein SDJN03_12952, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022149236.1	6.0e-17	70.00	uncharacterized protein LOC111017681 isoform X3 [Momordica charantia]	[more]
XP_022954065.1	7.8e-17	72.31	uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata]	[more]
XP_023549271.1	3.9e-16	70.77	activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pe...	[more]

BLAST of Carg18776 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18776 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7S4	2.9e-17	70.00	uncharacterized protein LOC111017681 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1GRE7	3.8e-17	72.31	uncharacterized protein LOC111456441 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0K963	4.1e-11	48.89	KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=...	[more]
A0A5D3C0W5	1.0e-09	70.00	Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CGC2	1.0e-09	70.00	activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Carg18776 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18776-RA	Carg18776-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding