Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACTTCTTCTCTTCCCACCAAATCCCTCCCGCCATTTTTGCCGGCATCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCCATTCCTAGCCCCACCTGACATTTCTCTCTCCACCTCTTCCTCATCGCCCTCTAAACTTCATATTCCCAGTTGTGCCAAGAAGAATCCCTGGCTCGACCCTTTCGACGATGGCGATGATCCGGACATGGAATACGGCTCTCTCTTCGCCGATGGGAAGCAGGAAGAGGACCCTCGCCCACCGGACAATCCGAACAATCCGTATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTTGCTTCTCTAGGTCTTAAACTCCGGGGAGATGTACGGCGGTGCTGCTGCGTGATTTCCGGCGGGGTCTATGAAAACCTACTCTTCTTTCCGGCCATTCAATTGCTCAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGTAAACAGACTTATGAATTGAATAAGAATGTGCGATGGTCTAATGTCTATGATCCGGATGATTATTTTCCTGAACCGGCCGATTACACTGACATGGTTGGATTGCTCAAGGTTGGTTCATTTTCTCGCCAATAATTGACCTAGAAATTGATAGAACAATATTGCTAGTGATTCTACCATGTATGAAAGACTTCAAATATTGGATCCCACTTCGATTTAGAACTTTGATGATACTTAGAAACTTTGATAGCCATATTAGTGATTTGTTAGGAGATCTCTTAGAAAAATATTTAGTGCCCATTTGAAACAATGGTTTCATTGTTGTTGCAGGGTAGATATTATGATATGGTGTTGTCAACAAAGCTAGCAGGGATTGGGCATGCGGCGTTTTTGTTCATGACAACAGCCAGAGACAGAGTTAGCTACATTTACCCTGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCTAATCTTTCCGAGGGAGGGTTCAACATGTGAGAATATTTTATACTTTTGTTTTGAATCTGTACAAAAGTTTTCATATAAGCTTTTGAGTTTAGTATTAGTATGACATAGCATTGGAGTGGAAGCTACTTTATGTAACGGCCCAAACTCACCGCTAGTAGCTATTGTCCTCTTTGAGTTTTCCCTCAAGGTTTTTAAAACGCGTTTGTTAGGGGAGAGGTTTCCACACCCTTATAAAGAATATTTCATTCTCCTCCCTAACTGATGTGAGATCTCACAATCCACCTCCCTTCGGGGCCCAGCGTCCTCGTTGGCACTTTTTCCCTTCTCCAATCGATGTAGGACCCTCCAATCCACACCCCCTTCGGGGCTAGTGTCCTTGCTTGCACACCGCCTCGTGTCCATCCCCTTTCAGGACTCAGCTTCCTTGCTGGCACACAGCTTGGTGTCTGGCTTTGATATCATTTGTAACAGCCCAAGCCACCGCTAGTAGATATTACCTCTTTGGGTTTTCCCTTCTCGGGTCTCCCCTCAAAGTTTTTAAAACACGTCTACTAGGGAGAGGTTTCCACACTTTTATCAAAAATGTTTTGTTCTCTTCCCCAATCGATGTGGGATCTCACACTTTATCTGTTTAAGTTCTTAGCAATCTCGTTTTCTTTTCAGTTTATACTGATAGTCACTCGTTGCGTTCTTGTGCTTATTTCCTAAGCCACAAGGAGGATGTCAAGAATGTATATAAAAGATTACATACTCCATAACTCATCAATATAAGTTATTACTGTATAGTATTAGTTTGATATAGGGTGCAGTTTTTGCCACTAAATGAGTGAAGTATGGCTTTTATGAGAGGACACTAAGTAATGTTCTACGTGAAAGCTGAAGAACAAAATAGAAATAGCAAGCTCAAACTTCTACTTTTTTGATGCCTTGAAGGCTGATTTTCATGATTTAGGTATCATCAAATGGTTGATTGGTTAGGGAGACCATTTCGTAGCGTTCCCAGGCATCCCGTTCCTCCGCTCAAAGTTTCGATTTCAAGAAAATTGAAGGAGATTGTAAAGGAAAAGTATAATCAAGCAGGTGTTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCAAGCCTGGGCTGAAATAGCCAATGCTATAAGGTAGGTATTATGTCAATATCTTGCTTTATCAGAAAAAAAATGATGAACTATAGGCAACAGTAACATAATGCAGCTTTTTCTTTCATTATTTTCTGATGATAACACTTGTTGAATCTAAACACAGGGGATTCAAGCCAGTTTTTGTCATTCCGCACGAAAAAGAAAGGGAAAACGTCGAGGAGGAGGTCGGAGATAACGCAAGCATCGTATTTATCACTACCCCAGGACAGGTACTCATAACTATCCATCTTTCTCTTTTGAGTATAGAAGAGTGAACTGTGAAAAGGATGAAAAAACAGTTTTAAGTAAGAAAGAAAGGATTGAAGAAAGGGAAATTAATGTTTTGAAGAAGTTGATAAATGTGAGATCTCACATTGGCTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACGTCTCCCTAGTAGACGTGTTTTAAAACTGTGAGGGAAAGCCCAAAGAGGATAATATGTACTAGCGGTGGACTTGGACTGTTACAAATGACAAATGGTATCAGAGCCAAGCATCGAACGGTGTGCTAGTGAGAACGTTGGGCCCCGCAAGGGGTGGATTGTGAGATCCGACATTGGTTGGAGAGGGGAATGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCTTAGTAGACGTGTTTTAAAAACCTTGAGGGAAAGCCTAAAGAGGATAATATCGGTTCGTGGTGGGCTTGGGCTATTACAAATGGTATCAAAGCTAGGCACCGAACGGTGTGCCAGCAAGGATGCTAGGCCCTGCTGGGGGTGGGTTGTGAGATCTCACATTAGTTGGAGAGGGGAACGAAACATTCCTTGTAAAGGTGTGGAAGCCTCTCTCTAGTAGACATGTTTTAAAGGTGTGGAAGCCTCTCTCTAGTACGAAACATTCTTTGTAAAGGTGTGGAAGCCTCTCTCTAGTAGACATGTTTTAAAACTTTGAGAGAAATCCTAAAAAATGATAATATTTGCTAGCGGTGGGTTTTGGGCTATTACAAATGGTACCAGAGCCAAGCACTGAACGGTGTGTCATCGAAGATGCTGGGCTCCGTAGGGAGTGGATTGTGAGATCCCACCTTGGTTGGAGAAGCACTCCTTATAAAAGTGTGGAAACCTCTCTCTAGTAGAGACGCGTTTTAAAACCTTGAGAGAAAGTCCAAGATAATATCTTCTAGCTGTGAGCTTGGGCTGTTAGAATAAAAGTGATACTTAAAAGCACACCATGCTTAACTTCAATCTGCAGTTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGATCCAACTCGCCATTGCTCGCGAAAAACCAAGGTCTTGATCTGTTTCTCCTTCCCAGAAACTCAATAGTTTGCTTACTGATCTTAAAATCTCCCATTTGCTAGTAGTATGAAAAGAACAGTGCTTGATATGCATCTATAATTCCAATGTGTTTGCAGCATTGCATTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCGGACGCCGAAGCAAAGAGATGCATCGCAGTTTCATCGACAACGGGACGACTAATCGACATCGATATGGGCACAGTTAAAAGGGCGATTCAGAGCTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGACATTACAGATTTTCTTACCCACTTTGTGCTTATCATCATGATAGTTACCGTCAGTTGTATATCAAAGCATTGGCAATGAAGAGGGTAATTGTATATTTTCTGTTTGGTCTTAACTCTTTTGAAAGCTCCCTTTCCTTACTCTTACTCTATCTCAGCTTTCGGTCCAAATTTCATTTGAACCTCGATCCGTTAGAGCTGGTGAGAAAAATCTAAAGTTCGTTCTTTCTA
mRNA sequence
ATGGCTACTTCTTCTCTTCCCACCAAATCCCTCCCGCCATTTTTGCCGGCATCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCCATTCCTAGCCCCACCTGACATTTCTCTCTCCACCTCTTCCTCATCGCCCTCTAAACTTCATATTCCCAGTTGTGCCAAGAAGAATCCCTGGCTCGACCCTTTCGACGATGGCGATGATCCGGACATGGAATACGGCTCTCTCTTCGCCGATGGGAAGCAGGAAGAGGACCCTCGCCCACCGGACAATCCGAACAATCCGTATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTTGCTTCTCTAGGTCTTAAACTCCGGGGAGATGTACGGCGGTGCTGCTGCGTGATTTCCGGCGGGGTCTATGAAAACCTACTCTTCTTTCCGGCCATTCAATTGCTCAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGTAAACAGACTTATGAATTGAATAAGAATGTGCGATGGTCTAATGTCTATGATCCGGATGATTATTTTCCTGAACCGGCCGATTACACTGACATGGTTGGATTGCTCAAGGGTAGATATTATGATATGGTGTTGTCAACAAAGCTAGCAGGGATTGGGCATGCGGCGTTTTTGTTCATGACAACAGCCAGAGACAGAGTTAGCTACATTTACCCTGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCTAATCTTTCCGAGGGAGGGTTCAACATGTATCATCAAATGGTTGATTGGTTAGGGAGACCATTTCGTAGCGTTCCCAGGCATCCCGTTCCTCCGCTCAAAGTTTCGATTTCAAGAAAATTGAAGGAGATTGTAAAGGAAAAGTATAATCAAGCAGGTGTTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCAAGCCTGGGCTGAAATAGCCAATGCTATAAGGGGATTCAAGCCAGTTTTTGTCATTCCGCACGAAAAAGAAAGGGAAAACGTCGAGGAGGAGGTCGGAGATAACGCAAGCATCGTATTTATCACTACCCCAGGACAGTTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGATCCAACTCGCCATTGCTCGCGAAAAACCAAGCATTGCATTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCGGACGCCGAAGCAAAGAGATGCATCGCAGTTTCATCGACAACGGGACGACTAATCGACATCGATATGGGCACAGTTAAAAGGGCGATTCAGAGCTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGACATTACAGATTTTCTTACCCACTTTGTGCTTATCATCATGATAGTTACCGTCAGTTGTATATCAAAGCATTGGCAATGAAGAGGGTAATTGTATATTTTCTGTTTGGTCTTAACTCTTTTGAAAGCTCCCTTTCCTTACTCTTACTCTATCTCAGCTTTCGGTCCAAATTTCATTTGAACCTCGATCCGTTAGAGCTGGTGAGAAAAATCTAAAGTTCGTTCTTTCTA
Coding sequence (CDS)
ATGGCTACTTCTTCTCTTCCCACCAAATCCCTCCCGCCATTTTTGCCGGCATCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCCATTCCTAGCCCCACCTGACATTTCTCTCTCCACCTCTTCCTCATCGCCCTCTAAACTTCATATTCCCAGTTGTGCCAAGAAGAATCCCTGGCTCGACCCTTTCGACGATGGCGATGATCCGGACATGGAATACGGCTCTCTCTTCGCCGATGGGAAGCAGGAAGAGGACCCTCGCCCACCGGACAATCCGAACAATCCGTATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTTGCTTCTCTAGGTCTTAAACTCCGGGGAGATGTACGGCGGTGCTGCTGCGTGATTTCCGGCGGGGTCTATGAAAACCTACTCTTCTTTCCGGCCATTCAATTGCTCAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGTAAACAGACTTATGAATTGAATAAGAATGTGCGATGGTCTAATGTCTATGATCCGGATGATTATTTTCCTGAACCGGCCGATTACACTGACATGGTTGGATTGCTCAAGGGTAGATATTATGATATGGTGTTGTCAACAAAGCTAGCAGGGATTGGGCATGCGGCGTTTTTGTTCATGACAACAGCCAGAGACAGAGTTAGCTACATTTACCCTGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCTAATCTTTCCGAGGGAGGGTTCAACATGTATCATCAAATGGTTGATTGGTTAGGGAGACCATTTCGTAGCGTTCCCAGGCATCCCGTTCCTCCGCTCAAAGTTTCGATTTCAAGAAAATTGAAGGAGATTGTAAAGGAAAAGTATAATCAAGCAGGTGTTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCAAGCCTGGGCTGAAATAGCCAATGCTATAAGGGGATTCAAGCCAGTTTTTGTCATTCCGCACGAAAAAGAAAGGGAAAACGTCGAGGAGGAGGTCGGAGATAACGCAAGCATCGTATTTATCACTACCCCAGGACAGTTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGATCCAACTCGCCATTGCTCGCGAAAAACCAAGCATTGCATTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCGGACGCCGAAGCAAAGAGATGCATCGCAGTTTCATCGACAACGGGACGACTAATCGACATCGATATGGGCACAGTTAAAAGGGCGATTCAGAGCTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGA
Protein sequence
MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKKNPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLRGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ
Homology
BLAST of Carg18735 vs. NCBI nr
Match:
KAG6575629.1 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014183.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 942.6 bits (2435), Expect = 1.3e-270
Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 471
BLAST of Carg18735 vs. NCBI nr
Match:
XP_022953552.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata])
HSP 1 Score: 939.5 bits (2427), Expect = 1.1e-269
Identity = 469/471 (99.58%), Postives = 470/471 (99.79%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
SEEKAKLFVPD+EAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDSEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471
BLAST of Carg18735 vs. NCBI nr
Match:
XP_022992479.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima])
HSP 1 Score: 935.6 bits (2417), Expect = 1.6e-268
Identity = 466/471 (98.94%), Postives = 468/471 (99.36%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCVISGGVYENLLFFP IQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLSQTFKP+SSNLSEGGFNMYHQM DWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPESSNLSEGGFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
SEEKAKLFVPDAEAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471
BLAST of Carg18735 vs. NCBI nr
Match:
XP_023548446.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subsp. pepo])
HSP 1 Score: 933.7 bits (2412), Expect = 6.2e-268
Identity = 467/471 (99.15%), Postives = 468/471 (99.36%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSP KLHIPSCAKK
Sbjct: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPCKLHIPSCAKK 60
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNA 240
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRH VPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHLVPPLKVSISRKLKEIV 300
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
SEEKAKLFVP+AEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPEAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 471
BLAST of Carg18735 vs. NCBI nr
Match:
XP_038896546.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida])
HSP 1 Score: 885.6 bits (2287), Expect = 1.9e-253
Identity = 442/471 (93.84%), Postives = 456/471 (96.82%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPF P SSF PSSPSTHFTKP FLAPPDISLSTSSSS SKL IPS +KK
Sbjct: 1 MATSSLPTKSLPPFSPTSSFSPSSPSTHFTKPLFLAPPDISLSTSSSSSSKLLIPS-SKK 60
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
N WLDPFDDGDDP+MEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61 NQWLDPFDDGDDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCV+SGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVMSGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPA+YTDMVGLLKGRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNA 240
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLS+TFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKE+V
Sbjct: 241 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVV 300
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANA+RGFKPVFVIP
Sbjct: 301 AEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAVRGFKPVFVIP 360
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
HEKERENVEEEVGD+ASIVFITTPGQLAALINDSAGVIATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDDASIVFITTPGQLAALINDSAGVIATNTAAVQLAIAREKPSIALFC 420
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
SEEKAKLFVPDAEAKRCI VSS TGRL DID+GTVK+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCITVSSATGRLTDIDLGTVKKAIQSFEVPLALAFQ 470
BLAST of Carg18735 vs. ExPASy Swiss-Prot
Match:
Q9S9N6 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1)
HSP 1 Score: 664.8 bits (1714), Expect = 7.0e-190
Identity = 337/461 (73.10%), Postives = 386/461 (83.73%), Query Frame = 0
Query: 17 ASSFP--PSSPSTHFTKPPF-LAPPDISLS-----TSSSSPSKLHIPSCAKKNPWLDPFD 76
ASS P P S F PPF + P + L+ TS SS +++ K NPWLDPFD
Sbjct: 2 ASSLPLLPKPISPFFKTPPFSTSKPLVFLNFQTRLTSRSSDVSVNLKK--KNNPWLDPFD 61
Query: 77 DGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLRGDVRRCC 136
G+DPD EYGSLFADGKQ+EDPRPPDNP+NPYGFLKFP+GY VE+ASL LK+RGDVRRCC
Sbjct: 62 SGEDPDNEYGSLFADGKQDEDPRPPDNPDNPYGFLKFPKGYTVELASLPLKIRGDVRRCC 121
Query: 137 CVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFP 196
CVISGGVYENLLFFP IQL+KDRYPGVQ+D++ + RGKQTYELNKNVRW+NVYDPDD++P
Sbjct: 122 CVISGGVYENLLFFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYDPDDHWP 181
Query: 197 EPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLS 256
EPA+YTDM+GLLKGRYYDMVLSTKLAG+GHAAFLFMTTARDRVSYIYP+VN+AGAGL LS
Sbjct: 182 EPAEYTDMIGLLKGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLS 241
Query: 257 QTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAG 316
+TF +++NLSE G++MY QM DWLGRPFRSVPR P+ PL+VSISRK+KE+V KY AG
Sbjct: 242 ETFTAENTNLSELGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAG 301
Query: 317 VEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENV 376
GK+IVIHGIESDSKASMQSKGD DSLL ++ WA+I +RGFKPVFVIPHEKERENV
Sbjct: 302 AVTGKFIVIHGIESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENV 361
Query: 377 EEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLF 436
E+ VGD+ SIVFITTPGQLAALINDSAGVIATNTAAIQLA AR+KP I LF SEEK KLF
Sbjct: 362 EDFVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLF 421
Query: 437 VPDAEAK-RCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLAL 469
VP AE K C+ ++S TG+L DID+GTVK A+Q FE LAL
Sbjct: 422 VPYAEEKSNCVIIASKTGKLADIDIGTVKNAMQVFEGSLAL 460
BLAST of Carg18735 vs. ExPASy TrEMBL
Match:
A0A6J1GNJ2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456057 PE=4 SV=1)
HSP 1 Score: 939.5 bits (2427), Expect = 5.4e-270
Identity = 469/471 (99.58%), Postives = 470/471 (99.79%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
SEEKAKLFVPD+EAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDSEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471
BLAST of Carg18735 vs. ExPASy TrEMBL
Match:
A0A6J1JXN2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488799 PE=4 SV=1)
HSP 1 Score: 935.6 bits (2417), Expect = 7.9e-269
Identity = 466/471 (98.94%), Postives = 468/471 (99.36%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCVISGGVYENLLFFP IQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLSQTFKP+SSNLSEGGFNMYHQM DWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPESSNLSEGGFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
SEEKAKLFVPDAEAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471
BLAST of Carg18735 vs. ExPASy TrEMBL
Match:
A0A5A7UYW0 (Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001650 PE=4 SV=1)
HSP 1 Score: 875.2 bits (2260), Expect = 1.3e-250
Identity = 435/471 (92.36%), Postives = 455/471 (96.60%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPFLP SSFPPSSPSTHFTKP FL+P ISLSTS SKL IP C+KK
Sbjct: 1 MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPLFLSPLLISLSTS----SKLRIP-CSKK 60
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
NPW DPFDDG+DP+MEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61 NPWFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPA+YTDMVG+LKGRYYDMVLSTKLAGIGHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNA 240
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLS+TFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKE++
Sbjct: 241 AGAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVI 300
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
EKY +AGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN IRGFKPVFVIP
Sbjct: 301 AEKYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIP 360
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
HEKERENVEEEVG+NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFC 420
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
SEEKAKLFVPDAEAKRCI VSSTTGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466
BLAST of Carg18735 vs. ExPASy TrEMBL
Match:
A0A1S3CEK1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499839 PE=4 SV=1)
HSP 1 Score: 872.1 bits (2252), Expect = 1.1e-249
Identity = 434/471 (92.14%), Postives = 454/471 (96.39%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPFLP SSFPPSSPSTHFTKP FL+P ISLSTS SKL IP C+KK
Sbjct: 1 MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPLFLSPLLISLSTS----SKLRIP-CSKK 60
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
NPW DPFDDG+DP+MEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61 NPWFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPA+YTDMVG+LKGRYYDMVLSTKLAGIGHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNA 240
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLS+TFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKE++
Sbjct: 241 AGAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVI 300
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
EKY +AGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN IRGFKPVFVIP
Sbjct: 301 AEKYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIP 360
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
EKERENVEEEVG+NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 REKERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFC 420
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
SEEKAKLFVPDAEAKRCI VSSTTGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466
BLAST of Carg18735 vs. ExPASy TrEMBL
Match:
A0A6J1CV27 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014527 PE=4 SV=1)
HSP 1 Score: 869.8 bits (2246), Expect = 5.3e-249
Identity = 432/470 (91.91%), Postives = 451/470 (95.96%), Query Frame = 0
Query: 1 MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
MATSSLPTKSLPPFLP+S+ PPSSPSTHFTKP FLAPPDIS +++ SP K HIP+ AKK
Sbjct: 3 MATSSLPTKSLPPFLPSSASPPSSPSTHFTKPLFLAPPDISPLSTTPSPPKSHIPT-AKK 62
Query: 61 NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
NPW DPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 63 NPWFDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 122
Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 123 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 182
Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
YDPDDYFPEPA+YTDMVGLLK RYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 183 YDPDDYFPEPAEYTDMVGLLKSRYYDMVLSTKLAGVGHAVFLFMTTARDRVSYIYPDVNA 242
Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
AGAGLFLS+TFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKV ISRKLKE+V
Sbjct: 243 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVLISRKLKEVV 302
Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
+EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIA+ IRGFKPVFVIP
Sbjct: 303 EEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIASTIRGFKPVFVIP 362
Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
HEKERENVEEEVGD+A I+FITTPGQLAALINDSAG+IATNTAAIQLAIAREKPSIALF
Sbjct: 363 HEKERENVEEEVGDDAGILFITTPGQLAALINDSAGLIATNTAAIQLAIAREKPSIALFS 422
Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAF 471
S+EKAKLFVPDAE+KRCI VSS TGRLIDIDMGTVKRAIQSFEVPLALAF
Sbjct: 423 SDEKAKLFVPDAESKRCITVSSATGRLIDIDMGTVKRAIQSFEVPLALAF 471
BLAST of Carg18735 vs. TAIR 10
Match:
AT1G15980.1 (NDH-dependent cyclic electron flow 1 )
HSP 1 Score: 664.8 bits (1714), Expect = 5.0e-191
Identity = 337/461 (73.10%), Postives = 386/461 (83.73%), Query Frame = 0
Query: 17 ASSFP--PSSPSTHFTKPPF-LAPPDISLS-----TSSSSPSKLHIPSCAKKNPWLDPFD 76
ASS P P S F PPF + P + L+ TS SS +++ K NPWLDPFD
Sbjct: 2 ASSLPLLPKPISPFFKTPPFSTSKPLVFLNFQTRLTSRSSDVSVNLKK--KNNPWLDPFD 61
Query: 77 DGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLRGDVRRCC 136
G+DPD EYGSLFADGKQ+EDPRPPDNP+NPYGFLKFP+GY VE+ASL LK+RGDVRRCC
Sbjct: 62 SGEDPDNEYGSLFADGKQDEDPRPPDNPDNPYGFLKFPKGYTVELASLPLKIRGDVRRCC 121
Query: 137 CVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFP 196
CVISGGVYENLLFFP IQL+KDRYPGVQ+D++ + RGKQTYELNKNVRW+NVYDPDD++P
Sbjct: 122 CVISGGVYENLLFFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYDPDDHWP 181
Query: 197 EPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLS 256
EPA+YTDM+GLLKGRYYDMVLSTKLAG+GHAAFLFMTTARDRVSYIYP+VN+AGAGL LS
Sbjct: 182 EPAEYTDMIGLLKGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLS 241
Query: 257 QTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAG 316
+TF +++NLSE G++MY QM DWLGRPFRSVPR P+ PL+VSISRK+KE+V KY AG
Sbjct: 242 ETFTAENTNLSELGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAG 301
Query: 317 VEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENV 376
GK+IVIHGIESDSKASMQSKGD DSLL ++ WA+I +RGFKPVFVIPHEKERENV
Sbjct: 302 AVTGKFIVIHGIESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENV 361
Query: 377 EEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLF 436
E+ VGD+ SIVFITTPGQLAALINDSAGVIATNTAAIQLA AR+KP I LF SEEK KLF
Sbjct: 362 EDFVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLF 421
Query: 437 VPDAEAK-RCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLAL 469
VP AE K C+ ++S TG+L DID+GTVK A+Q FE LAL
Sbjct: 422 VPYAEEKSNCVIIASKTGKLADIDIGTVKNAMQVFEGSLAL 460
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6575629.1 | 1.3e-270 | 100.00 | Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita ... | [more] |
XP_022953552.1 | 1.1e-269 | 99.58 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata] | [more] |
XP_022992479.1 | 1.6e-268 | 98.94 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima] | [more] |
XP_023548446.1 | 6.2e-268 | 99.15 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subs... | [more] |
XP_038896546.1 | 1.9e-253 | 93.84 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Q9S9N6 | 7.0e-190 | 73.10 | Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thali... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1GNJ2 | 5.4e-270 | 99.58 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschat... | [more] |
A0A6J1JXN2 | 7.9e-269 | 98.94 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima ... | [more] |
A0A5A7UYW0 | 1.3e-250 | 92.36 | Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194... | [more] |
A0A1S3CEK1 | 1.1e-249 | 92.14 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3... | [more] |
A0A6J1CV27 | 5.3e-249 | 91.91 | photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charant... | [more] |
Match Name | E-value | Identity | Description | |
AT1G15980.1 | 5.0e-191 | 73.10 | NDH-dependent cyclic electron flow 1 | [more] |