Carg18716 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18716
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein UPSTREAM OF FLC isoform X1
Location	Carg_Chr17: 7317711 .. 7319945 (+)
RNA-Seq Expression	Carg18716
Synteny	Carg18716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTGATAATGGCGGAGATGTTAGAAGAGTTGATATTATTTACTTTCTTGGTCGGATGGGACACGTGGACCAACCCCATCTCATCCGTCTTCATCATCTCGCCGCCGCCGTCGCCTGCGGCGTTTATCTCCGAGGTATGAAGACGAGATTGTATTCCTGTTCTTATTCTCGTCAAATTCTCTGTTCCATCCCCACTTATATATATATTAAGATATATTATTTATTGAATATATTTTAGATATTATATCTTAATATTCTTTCTTTTATGATTTGATTTAAAGTATATTTTATTTTATTTTCAATATTTAATCCATTTATATTAGGTATTAGTTGATAGCTTGTATTTTATTCAAAGGATATCAATATCAATAAGAATACATATTTTCCAATTTTATTTCTATTTTTTATTTTTAATAATATATTTATTTATTTATTTTTATTACAAATTACAATAACTCAATTATTTTATTTTTATTTTATAATTATATTTTAGTATCTTTTTCTAATAAATTTAAAATTTATGAAATTGGGATCAAAACAATAATTTTTTTATGTGAAATACTAATATTCAAATTTAATTTTTTAACAATTATGTGGGTGTATGTGAATATTATATTAGATTTTTGTTTACATTTTTTAAATAAAATTATATTGTAAAATGAATAAGCTCCAATAAATTAAAAAATTCTGCCCCTTTCTCATTCTCTATTTTGAATAATAAGTTGAAAAAAAAAAGATTAAATAAACAAATAATAATAATAATAATAATAATAATAATAAATGTGTGTATATTTAAAAATGTGAATAGGTAATACCCAACCTGCATTTACAAAGAGCAAGAGCTACTCAACCGGAGCTTCCACTTCCAACATGCTTCGCCAGTGGATCACGTGCAGAGCAGTAGATGCAAACGACGCTGTTTTGATCAACAATCTATCTCCAAAAGCTTCACCCAATCCGCCCCCATTGGAAAAATCCATAAACGCCGCCGTGTTTTGCAGAGACGACGAGTTCGGTGGCTCCGCCCGAGTTCCTCGGAATTCTTGGGATGGGAACCTCCAAATCCGCCGCCATTACAGCCACCCAAGTTTTCGGTAATTTCATAAACTTCCCGTTGAATTATGTAAAAGTTCAAAATTTAATCTCGACCGATTCATTTTGATCCTATATATACATAGGAAAAGCTTCGACGATTCAAGGAAGAAGAGGCAGAAGGAGAGCGGTGGAAGAAAGGCGGCAGCCGCCCCGATTTACAAGCCAATGGCAGGACCAAACTGCTCGTAAGCTTTTCTTAACAATTTTTAGCCTCCCTCACGTTTTATGTTTTTGTTAGAGGAACACGATTCTCCCCAATGTATAATATTGTCCACTTTGAGCATAAGCTCTCATGATTCTATTTTAGACTTCTCCAAAATGCCTCATTGATTATAAACTATGATCATTCCTTAAATTAGCCAATGTGGGACTTTCATCATCCAACACATCCCCTCAAACAAAGTACGTCTTTCCTTAATCGAGACTCAACTCTTTTTTTTTTCTTTTGGAGTCTTAGTCATTTTTTGACTATGCCTTCGAGGAGGCTCGACTCCTTTTCTTTTGGAGTTCTTTGTTTGACATTTGAGGATTTACCAATCTATTGACACAACTAAGTTCAGAGCATGACTCTGATACCATGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGTTTTAAGCTTCCCTAAAAGGCTTCATAACAATGGAGAGAGTATTAATTGATTATAAACTCTTGATCATTCCTAAATTAGCGGACGTAAGACTTTTATCATCGGCCAGTTTTGAGTTTTATGAAAATGGGGTTGAGTTTTTTGGTTTGTCAACGCCAAGAACAAGTCAATTCGTTCTTTGAACGGTTTTAAAAGACATGGCCTTGGAAGAGTTGAAGAAGCAAGCCATTTTTAAAAAGTCGTCTCTTTTAGAACGGGAGGAATACCATTGAATATAATATTATATATATAAAAAAAAAAAAAAAAAAATGCAGGTTATGTGGGAAGACTTTCAGGCCGGAGAAGATGCATTCACACATGAAATCGTGTAGAGGACTCAGGTCTCTGACCAAGACTGCTTCAACGTCCAACAAAACGACATCGTCTAAGTCAACCACGACACCAACTTCCGACAAGGATTCGGCTTCCACCTACCTGTTGACCCACTGA

mRNA sequence

ATGGAGGCTGATAATGGCGGAGATGTTAGAAGAGTTGATATTATTTACTTTCTTGGTCGGATGGGACACGTGGACCAACCCCATCTCATCCGTCTTCATCATCTCGCCGCCGCCGTCGCCTGCGGCGTTTATCTCCGAGGTAATACCCAACCTGCATTTACAAAGAGCAAGAGCTACTCAACCGGAGCTTCCACTTCCAACATGCTTCGCCAGTGGATCACGTGCAGAGCAGTAGATGCAAACGACGCTGTTTTGATCAACAATCTATCTCCAAAAGCTTCACCCAATCCGCCCCCATTGGAAAAATCCATAAACGCCGCCGTGTTTTGCAGAGACGACGAGTTCGGTGGCTCCGCCCGAGTTCCTCGGAATTCTTGGGATGGGAACCTCCAAATCCGCCGCCATTACAGCCACCCAAGTTTTCGGAAAAGCTTCGACGATTCAAGGAAGAAGAGGCAGAAGGAGAGCGGTGGAAGAAAGGCGGCAGCCGCCCCGATTTACAAGCCAATGGCAGGACCAAACTGCTCGCCGGAGAAGATGCATTCACACATGAAATCGTGTAGAGGACTCAGGTCTCTGACCAAGACTGCTTCAACGTCCAACAAAACGACATCGTCTAAGTCAACCACGACACCAACTTCCGACAAGGATTCGGCTTCCACCTACCTGTTGACCCACTGA

Coding sequence (CDS)

ATGGAGGCTGATAATGGCGGAGATGTTAGAAGAGTTGATATTATTTACTTTCTTGGTCGGATGGGACACGTGGACCAACCCCATCTCATCCGTCTTCATCATCTCGCCGCCGCCGTCGCCTGCGGCGTTTATCTCCGAGGTAATACCCAACCTGCATTTACAAAGAGCAAGAGCTACTCAACCGGAGCTTCCACTTCCAACATGCTTCGCCAGTGGATCACGTGCAGAGCAGTAGATGCAAACGACGCTGTTTTGATCAACAATCTATCTCCAAAAGCTTCACCCAATCCGCCCCCATTGGAAAAATCCATAAACGCCGCCGTGTTTTGCAGAGACGACGAGTTCGGTGGCTCCGCCCGAGTTCCTCGGAATTCTTGGGATGGGAACCTCCAAATCCGCCGCCATTACAGCCACCCAAGTTTTCGGAAAAGCTTCGACGATTCAAGGAAGAAGAGGCAGAAGGAGAGCGGTGGAAGAAAGGCGGCAGCCGCCCCGATTTACAAGCCAATGGCAGGACCAAACTGCTCGCCGGAGAAGATGCATTCACACATGAAATCGTGTAGAGGACTCAGGTCTCTGACCAAGACTGCTTCAACGTCCAACAAAACGACATCGTCTAAGTCAACCACGACACCAACTTCCGACAAGGATTCGGCTTCCACCTACCTGTTGACCCACTGA

Protein sequence

MEADNGGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLRGNTQPAFTKSKSYSTGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCSPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH

Homology

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BLAST of Carg18716 vs. NCBI nr
Match: KAG7014201.1 (hypothetical protein SDJN02_24376, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 449.1 bits (1154), Expect = 2.2e-122
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MEADNGGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLRGNTQPAFTKSKSYS 60
           MEADNGGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLRGNTQPAFTKSKSYS
Sbjct: 1   MEADNGGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLRGNTQPAFTKSKSYS 60

Query: 61  TGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSAR 120
           TGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSAR
Sbjct: 61  TGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSAR 120

Query: 121 VPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCSPEKM 180
           VPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCSPEKM
Sbjct: 121 VPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCSPEKM 180

Query: 181 HSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 227
           HSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Sbjct: 181 HSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 226

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BLAST of Carg18716 vs. NCBI nr
Match: KAG6575652.1 (hypothetical protein SDJN03_26291, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.5 bits (1116), Expect = 5.6e-118
Identity = 224/233 (96.14%), Postives = 224/233 (96.14%), Query Frame = 0


Query: 1   MEADNGGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLRGNTQPAFTKSKSYS 60
           MEADNGGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAA  CGVYLRGNTQPAFTKSKSYS
Sbjct: 1   MEADNGGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAA-GCGVYLRGNTQPAFTKSKSYS 60

Query: 61  TGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSAR 120
           TGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSAR
Sbjct: 61  TGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSAR 120

Query: 121 VPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCS---- 180
           VPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCS    
Sbjct: 121 VPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCSLCGK 180

Query: 181 ---PEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 227
              PEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Sbjct: 181 TFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 232

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BLAST of Carg18716 vs. NCBI nr
Match: XP_022953921.1 (uncharacterized protein LOC111456325 [Cucurbita moschata])

HSP 1 Score: 417.9 bits (1073), Expect = 5.5e-113
Identity = 215/227 (94.71%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 7   GDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLRGNTQPAFTKSKSYSTGASTS 66
           GDVRRVDIIYFLGRMGHV QPHLIRLHHLAAA ACGVYLRGNTQPAFTKSKSYS+GASTS
Sbjct: 4   GDVRRVDIIYFLGRMGHVGQPHLIRLHHLAAAAACGVYLRGNTQPAFTKSKSYSSGASTS 63

Query: 67  NMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSARVPRNSW 126
           NMLRQWITCRAVDANDAVLINNLSPKASPNPP LEKS NAAVFCRDDEFGGSARVPRNSW
Sbjct: 64  NMLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSW 123

Query: 127 DGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCS-------PEK 186
           DGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCS       PEK
Sbjct: 124 DGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCSLCGKTFRPEK 183

Query: 187 MHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 227
           MHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Sbjct: 184 MHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 230

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BLAST of Carg18716 vs. NCBI nr
Match: XP_023548453.1 (uncharacterized protein LOC111807110 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 414.8 bits (1065), Expect = 4.6e-112
Identity = 214/233 (91.85%), Postives = 217/233 (93.13%), Query Frame = 0


Query: 1   MEADNGGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLRGNTQPAFTKSKSYS 60
           ME DNGGDVRRVDIIYFLGRMGHV+QPHLIR+HHLAAA  CGVYLRGNTQPAFTKSKSYS
Sbjct: 62  MEGDNGGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAA-GCGVYLRGNTQPAFTKSKSYS 121

Query: 61  TGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSAR 120
           TGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDD+FG SAR
Sbjct: 122 TGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDDFGASAR 181

Query: 121 VPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCS---- 180
           VPRNSWDGNLQIRRHYSHPSFRKSFD SRKKRQKESG RKAA AP YKPMAGPNCS    
Sbjct: 182 VPRNSWDGNLQIRRHYSHPSFRKSFDHSRKKRQKESGRRKAADAPTYKPMAGPNCSLCGK 241

Query: 181 ---PEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 227
              PEKMHSHMKSCRGLRSLTKTASTSNKTTSS STTTPTSDKDSASTYLLTH
Sbjct: 242 TFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSNSTTTPTSDKDSASTYLLTH 293

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BLAST of Carg18716 vs. NCBI nr
Match: XP_022991936.1 (uncharacterized protein LOC111488428 [Cucurbita maxima])

HSP 1 Score: 285.0 bits (728), Expect = 5.5e-73
Identity = 148/166 (89.16%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 68  MLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSARVPRNSWD 127
           MLRQWITCR VDANDAVLINNLSP+ASPNP P EKSINAAVFCRDDEFGGSARVPRNSWD
Sbjct: 1   MLRQWITCREVDANDAVLINNLSPRASPNPHPSEKSINAAVFCRDDEFGGSARVPRNSWD 60

Query: 128 GNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCS-------PEKM 187
           GNLQIRRHYSHPSFRKS DDSRKKRQKES GRK AA P YKP+AGP+CS       PEKM
Sbjct: 61  GNLQIRRHYSHPSFRKSLDDSRKKRQKESSGRKVAATPTYKPIAGPSCSLCGKTFRPEKM 120

Query: 188 HSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 227
           HSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Sbjct: 121 HSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 166

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BLAST of Carg18716 vs. ExPASy Swiss-Prot
Match: Q9SYJ8 (Protein SOSEKI 1 OS=Arabidopsis thaliana OX=3702 GN=SOK1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 6  GGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLR 47
          GG+VRRV+++YFL R GHVD PHL+R+HHL+     GV+LR
Sbjct: 7  GGEVRRVNLVYFLSRSGHVDHPHLLRVHHLSRN---GVFLR 44

HSP 2 Score: 50.1 bits (118), Expect = 3.9e-05
Identity = 57/174 (32.76%), Postives = 80/174 (45.98%), Query Frame = 0


Query: 52  AFTKSKSYSTGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCR 111
           ++ K+KSYS+    S++LR  + C  +D NDAVL+            PL KS       R
Sbjct: 211 SYIKNKSYSS-VRASHVLRNLMKCGGLDTNDAVLV------------PLNKS-------R 270

Query: 112 DDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDD--SRKKRQKESGGRKAAAAPIYKP 171
              FG        +W+   + + H  H + RKSF+   S  K ++     K   AP  KP
Sbjct: 271 SGAFG-------PAWEDERRYQYHQQH-NARKSFEGAWSGIKMKETIEFCKPKVAP-SKP 330

Query: 172 MAGPNCS-------PEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDK 217
              P CS       PEKMHSHMK CRG+    K +S +N   +S +T  P   +
Sbjct: 331 SMAPLCSQCGKLFKPEKMHSHMKLCRGM----KNSSANNDLMTSNNTVKPRQQR 351

[Close]

BLAST of Carg18716 vs. ExPASy TrEMBL
Match: A0A6J1GPF9 (uncharacterized protein LOC111456325 OS=Cucurbita moschata OX=3662 GN=LOC111456325 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.6e-113
Identity = 215/227 (94.71%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 7   GDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLRGNTQPAFTKSKSYSTGASTS 66
           GDVRRVDIIYFLGRMGHV QPHLIRLHHLAAA ACGVYLRGNTQPAFTKSKSYS+GASTS
Sbjct: 4   GDVRRVDIIYFLGRMGHVGQPHLIRLHHLAAAAACGVYLRGNTQPAFTKSKSYSSGASTS 63

Query: 67  NMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSARVPRNSW 126
           NMLRQWITCRAVDANDAVLINNLSPKASPNPP LEKS NAAVFCRDDEFGGSARVPRNSW
Sbjct: 64  NMLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSW 123

Query: 127 DGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCS-------PEK 186
           DGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCS       PEK
Sbjct: 124 DGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCSLCGKTFRPEK 183

Query: 187 MHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 227
           MHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Sbjct: 184 MHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 230

[Close]

BLAST of Carg18716 vs. ExPASy TrEMBL
Match: A0A6J1JS66 (uncharacterized protein LOC111488428 OS=Cucurbita maxima OX=3661 GN=LOC111488428 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.7e-73
Identity = 148/166 (89.16%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 68  MLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCRDDEFGGSARVPRNSWD 127
           MLRQWITCR VDANDAVLINNLSP+ASPNP P EKSINAAVFCRDDEFGGSARVPRNSWD
Sbjct: 1   MLRQWITCREVDANDAVLINNLSPRASPNPHPSEKSINAAVFCRDDEFGGSARVPRNSWD 60

Query: 128 GNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCS-------PEKM 187
           GNLQIRRHYSHPSFRKS DDSRKKRQKES GRK AA P YKP+AGP+CS       PEKM
Sbjct: 61  GNLQIRRHYSHPSFRKSLDDSRKKRQKESSGRKVAATPTYKPIAGPSCSLCGKTFRPEKM 120

Query: 188 HSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 227
           HSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Sbjct: 121 HSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH 166

[Close]

BLAST of Carg18716 vs. ExPASy TrEMBL
Match: A0A5D3CFC8 (Protein UPSTREAM OF FLC isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001300 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 6.8e-53
Identity = 153/312 (49.04%), Postives = 175/312 (56.09%), Query Frame = 0


Query: 1   MEADN---GGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLR----------- 60
           MEA+N   GG++R+V IIYFL RMGHV+QPHLIR+HHLA A + GVYLR           
Sbjct: 1   MEANNNNRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGA-SGGVYLRDVKRWLGELRG 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  KEMPEAFSWSYKRKYKTGYVWQDLVDDDLITPISDNEYVLQGSQIIFPSTLFGGTTATST 120

Query: 121 --GNTQPAFTKSKSYSTGASTSNMLRQWITC--RAVDANDAVLINNLSPKASPNPPPLEK 180
              ++QPAFTKSKSYS+GA  S++ RQ ITC   AVD ND VL+ N SPK     PPLEK
Sbjct: 121 VSSSSQPAFTKSKSYSSGA--SHVFRQLITCGTGAVDTNDTVLVKNRSPK----DPPLEK 180

Query: 181 SINAAVFCRDDEFGGSARVPRNSWD-GNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKA 226
             N AV CRD+  GGSARV  +SWD GNL+IRR  S    R S DD RKKR KE+G  K 
Sbjct: 181 PKNDAVVCRDEVLGGSARVIGSSWDFGNLEIRRQTS----RTSVDDLRKKRPKENGNGKV 240

[Close]

BLAST of Carg18716 vs. ExPASy TrEMBL
Match: A0A6J1H7K3 (protein UPSTREAM OF FLC-like OS=Cucurbita moschata OX=3662 GN=LOC111461160 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 5.4e-50
Identity = 123/184 (66.85%), Postives = 138/184 (75.00%), Query Frame = 0


Query: 50  QPAFTKSKSYSTGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVF 109
           Q AFTKSKSYS+GAST  MLRQWITC A+D +D+VLI N SPK S     LEK  N AVF
Sbjct: 176 QHAFTKSKSYSSGAST--MLRQWITCGAIDTDDSVLIKNPSPKDS----SLEKPKNGAVF 235

Query: 110 CRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKP 169
           CRDDE GGSARV RNSWDGNL++   +S  + RKS DDSRKKRQKESGG K A    +KP
Sbjct: 236 CRDDEMGGSARVQRNSWDGNLELSCQHSQQNSRKSLDDSRKKRQKESGGGKVAVT--HKP 295

Query: 170 MAGPNCS-------PEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTY 227
           MAGPNCS       PEKMHSHMKSC+GL+SLTKTA+TS   T SKSTT  +SDK+  STY
Sbjct: 296 MAGPNCSLCGKSFKPEKMHSHMKSCKGLKSLTKTATTS---TKSKSTTAKSSDKELVSTY 348

[Close]

BLAST of Carg18716 vs. ExPASy TrEMBL
Match: A0A6J1H7K3 (protein UPSTREAM OF FLC-like OS=Cucurbita moschata OX=3662 GN=LOC111461160 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-05
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 7  GDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLR 47
          G+VRR+ ++YFL RMGHV+QPHLIR+HHL      GVYLR
Sbjct: 4  GEVRRLHVVYFLSRMGHVEQPHLIRVHHLPR--RGGVYLR 41

HSP 2 Score: 197.2 bits (500), Expect = 7.3e-47
Identity = 118/176 (67.05%), Postives = 131/176 (74.43%), Query Frame = 0


Query: 48  NTQPAFTKSKSYSTGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPL-EKSINA 107
           +T PAFTKSKSYS+GA  S++LRQWITC AVD ND VLI N S  A+ +PP L EK  N 
Sbjct: 248 STHPAFTKSKSYSSGA--SHVLRQWITCGAVDTNDTVLIKNRS--AAKDPPNLPEKPKND 307

Query: 108 AVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRK-AAAAP 167
           AV CRDD  GGSARV R+SWDG L I RH +  + RKSFD+ RKKR KESGGRK AAA  
Sbjct: 308 AVICRDDMLGGSARVLRSSWDGQLDIHRHNNQQNSRKSFDELRKKRPKESGGRKVAAATA 367

Query: 168 IYKPMAGPNCS-------PEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTS 215
            +K M GPNCS       PEKMH+HMKSCRGL+SL KT STSNKTTSSKSTTT TS
Sbjct: 368 AFKAMGGPNCSQCGKSFKPEKMHAHMKSCRGLKSLLKTPSTSNKTTSSKSTTTTTS 419

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BLAST of Carg18716 vs. TAIR 10
Match: AT1G05577.1 (Domain of unknown function (DUF966) )

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 6  GGDVRRVDIIYFLGRMGHVDQPHLIRLHHLAAAVACGVYLR 47
          GG+VRRV+++YFL R GHVD PHL+R+HHL+     GV+LR
Sbjct: 7  GGEVRRVNLVYFLSRSGHVDHPHLLRVHHLSRN---GVFLR 44

HSP 2 Score: 50.1 bits (118), Expect = 2.8e-06
Identity = 57/174 (32.76%), Postives = 80/174 (45.98%), Query Frame = 0


Query: 52  AFTKSKSYSTGASTSNMLRQWITCRAVDANDAVLINNLSPKASPNPPPLEKSINAAVFCR 111
           ++ K+KSYS+    S++LR  + C  +D NDAVL+            PL KS       R
Sbjct: 211 SYIKNKSYSS-VRASHVLRNLMKCGGLDTNDAVLV------------PLNKS-------R 270

Query: 112 DDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDD--SRKKRQKESGGRKAAAAPIYKP 171
              FG        +W+   + + H  H + RKSF+   S  K ++     K   AP  KP
Sbjct: 271 SGAFG-------PAWEDERRYQYHQQH-NARKSFEGAWSGIKMKETIEFCKPKVAP-SKP 330

Query: 172 MAGPNCS-------PEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDK 217
              P CS       PEKMHSHMK CRG+    K +S +N   +S +T  P   +
Sbjct: 331 SMAPLCSQCGKLFKPEKMHSHMKLCRGM----KNSSANNDLMTSNNTVKPRQQR 351

The following BLAST results are available for this feature:

BLAST of Carg18716 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014201.1	2.2e-122	100.00	hypothetical protein SDJN02_24376, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575652.1	5.6e-118	96.14	hypothetical protein SDJN03_26291, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953921.1	5.5e-113	94.71	uncharacterized protein LOC111456325 [Cucurbita moschata]	[more]
XP_023548453.1	4.6e-112	91.85	uncharacterized protein LOC111807110 [Cucurbita pepo subsp. pepo]	[more]
XP_022991936.1	5.5e-73	89.16	uncharacterized protein LOC111488428 [Cucurbita maxima]	[more]

BLAST of Carg18716 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYJ8	3.2e-07	60.98	Protein SOSEKI 1 OS=Arabidopsis thaliana OX=3702 GN=SOK1 PE=1 SV=1	[more]

BLAST of Carg18716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPF9	2.6e-113	94.71	uncharacterized protein LOC111456325 OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]
A0A6J1JS66	2.7e-73	89.16	uncharacterized protein LOC111488428 OS=Cucurbita maxima OX=3661 GN=LOC111488428...	[more]
A0A5D3CFC8	6.8e-53	49.04	Protein UPSTREAM OF FLC isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1H7K3	5.4e-50	66.85	protein UPSTREAM OF FLC-like OS=Cucurbita moschata OX=3662 GN=LOC111461160 PE=3 ...	[more]
A0A6J1H7K3	9.1e-05	65.00	protein UPSTREAM OF FLC-like OS=Cucurbita moschata OX=3662 GN=LOC111461160 PE=3 ...	[more]

Pages

BLAST of Carg18716 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05577.1	2.3e-08	60.98	Domain of unknown function (DUF966)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..226
None	No IPR available	PANTHER	PTHR31083:SF5	F3F20.2 PROTEIN	coord: 3..46 coord: 49..218
IPR010369	Protein SOSEKI	PANTHER	PTHR31083	UPSTREAM OF FLC PROTEIN (DUF966)	coord: 49..218
IPR010369	Protein SOSEKI	PANTHER	PTHR31083	UPSTREAM OF FLC PROTEIN (DUF966)	coord: 3..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18716-RA	Carg18716-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051258	protein polymerization
cellular_component	GO:0005886	plasma membrane