Carg18679 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18679
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	thylakoid lumenal 19 kDa protein, chloroplastic-like
Location	Carg_Chr17: 7469208 .. 7470043 (+)
RNA-Seq Expression	Carg18679
Synteny	Carg18679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCAGTAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAGCAACCGCCCCAAAACTGCCGCAAATTCCGCCGCCGCAAAAGCCCCAAATTATCCCCGTTCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGGGTAGCGCCATCGCCATAGCCACGATTGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACTGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCAACAAGAAAGACTCTGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGATTAGTATCAAAAGTCGAAAAAGGTATTTCAAAATCGCCATGGAAATTCCTAAATTAAAGCGCTCGAATAGTTCAATTCATTTCGAAAATCAATTTTAGCTTCTTGATTCCGCAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCCGGAATCCGGCAATTAGGGCCAAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTTAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATGGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAGTCGAGATCAGGATATGCTTCGGCATGTTCATGAATCCTTCAAGACGATCGGATCGTATTGA

mRNA sequence

ATGGCCGCAGTAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAGCAACCGCCCCAAAACTGCCGCAAATTCCGCCGCCGCAAAAGCCCCAAATTATCCCCGTTCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGGGTAGCGCCATCGCCATAGCCACGATTGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACTGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCAACAAGAAAGACTCTGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGATTAGTATCAAAAGTCGAAAAAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCCGGAATCCGGCAATTAGGGCCAAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTTAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATGGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAGTCGAGATCAGGATATGCTTCGGCATGTTCATGAATCCTTCAAGACGATCGGATCGTATTGA

Coding sequence (CDS)

ATGGCCGCAGTAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAGCAACCGCCCCAAAACTGCCGCAAATTCCGCCGCCGCAAAAGCCCCAAATTATCCCCGTTCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGGGTAGCGCCATCGCCATAGCCACGATTGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACTGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCAACAAGAAAGACTCTGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGATTAGTATCAAAAGTCGAAAAAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCCGGAATCCGGCAATTAGGGCCAAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTTAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATGGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAGTCGAGATCAGGATATGCTTCGGCATGTTCATGAATCCTTCAAGACGATCGGATCGTATTGA

Protein sequence

MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIATIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHESFKTIGSY

Homology

[Close]

BLAST of Carg18679 vs. NCBI nr
Match: KAG6575683.1 (Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014238.1 Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 477.6 bits (1228), Expect = 6.3e-131
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIAT 60
           MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIAT
Sbjct: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIAT 60

Query: 61  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120
           IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV
Sbjct: 61  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120

Query: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180
           EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS
Sbjct: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180

Query: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHES 240
           AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHES
Sbjct: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHES 240

Query: 241 FKTIGSY 248
           FKTIGSY
Sbjct: 241 FKTIGSY 247

[Close]

BLAST of Carg18679 vs. NCBI nr
Match: XP_023547955.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471.1 bits (1211), Expect = 5.9e-129
Identity = 242/247 (97.98%), Postives = 244/247 (98.79%), Query Frame = 0


Query: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIAT 60
           MAA ISPLAFFSAAAASTG TAPKLPQIPPPQKPQIIP+LQSKPSLSSLTAAGSAIAIA 
Sbjct: 1   MAAAISPLAFFSAAAASTGTTAPKLPQIPPPQKPQIIPILQSKPSLSSLTAAGSAIAIAA 60

Query: 61  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120
           IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV
Sbjct: 61  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120

Query: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180
           EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS
Sbjct: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180

Query: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHES 240
           AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVHES
Sbjct: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES 240

Query: 241 FKTIGSY 248
           FKTIGSY
Sbjct: 241 FKTIGSY 247

[Close]

BLAST of Carg18679 vs. NCBI nr
Match: XP_022991922.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 445.7 bits (1145), Expect = 2.7e-121
Identity = 233/247 (94.33%), Postives = 236/247 (95.55%), Query Frame = 0


Query: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIAT 60
           MA  ISPLAFFSAAAASTG TAPKL     PQKPQIIP+LQSKPSLSSLTAA SAIAIA 
Sbjct: 24  MATAISPLAFFSAAAASTGTTAPKL-----PQKPQIIPILQSKPSLSSLTAACSAIAIAA 83

Query: 61  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120
           IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVSKV
Sbjct: 84  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKV 143

Query: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180
           EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS
Sbjct: 144 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 203

Query: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHES 240
           AEEKKDENGQIYYEYEID AGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVHES
Sbjct: 204 AEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES 263

Query: 241 FKTIGSY 248
           FKTIGSY
Sbjct: 264 FKTIGSY 265

[Close]

BLAST of Carg18679 vs. NCBI nr
Match: XP_038896859.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 416.8 bits (1070), Expect = 1.3e-112
Identity = 217/251 (86.45%), Postives = 230/251 (91.63%), Query Frame = 0


Query: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTA----AGSAI 60
           MA  I+PLAFFSAAAASTG TAPK PQ PP  KPQ IP+LQSKP LS+ TA    A + I
Sbjct: 1   MATAITPLAFFSAAAASTGTTAPKPPQTPPLPKPQ-IPILQSKPPLSTSTAPISIAATTI 60

Query: 61  AIATIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERL 120
           A+A I+ST+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEY+YDVP+GWKERL
Sbjct: 61  AVAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERL 120

Query: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 181 ESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRH 240
           ESF AEEKKDENGQIYY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRH
Sbjct: 181 ESFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240

Query: 241 VHESFKTIGSY 248
           VHESFKTIGSY
Sbjct: 241 VHESFKTIGSY 250

[Close]

BLAST of Carg18679 vs. NCBI nr
Match: KAG7025659.1 (Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 407.5 bits (1046), Expect = 8.1e-110
Identity = 217/250 (86.80%), Postives = 226/250 (90.40%), Query Frame = 0


Query: 1   MAAVISPLAFFSA-AAASTGATAPKLPQIPPPQKPQIIPVLQSKPS--LSSLTAAGSAIA 60
           MA  ISPLAFFSA AAA+TGA  PK  Q PP  KP +IPVLQS PS  LSSLTA  SAIA
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKP-LIPVLQSNPSGPLSSLTAPISAIA 60

Query: 61  IATIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLV 120
           +A I+ST+PPSLADAG AFNVYYGTAASAANYGG GGNA+KKDSAEY+YDVP+GWKERLV
Sbjct: 61  VAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHV 240
            FSAEEKKDENGQIYY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW RDQDMLRHV
Sbjct: 181 GFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHV 240

Query: 241 HESFKTIGSY 248
           HESFKT+GSY
Sbjct: 241 HESFKTVGSY 249

[Close]

BLAST of Carg18679 vs. ExPASy Swiss-Prot
Match: P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-74
Identity = 143/221 (64.71%), Postives = 173/221 (78.28%), Query Frame = 0


Query: 26  PQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIATIVSTSPPSLADAGPAFNVYYGTAAS 85
           P I   + P I+P   +    +SL AA +A ++ T+V    P+  +    + +YYGTAAS
Sbjct: 10  PVISATRTP-IVPKAIASRLGTSLAAALAATSVLTMVPVL-PAAGEGNQTYKIYYGTAAS 69

Query: 86  AANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTF 145
           AANYGG GGN+++K SAEYVYDVP+GWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTF
Sbjct: 70  AANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTF 129

Query: 146 LAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSL 205
           LAG RQL P+DVILNNLALSDV LQD IA A+   +EE+KDE GQ+YY YEIDG G HSL
Sbjct: 130 LAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSL 189

Query: 206 ISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHESFKTIGS 247
           I+VTC+KN+LYAHFVNAP PEW+RD D L H+ +SFKT+ S
Sbjct: 190 ITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

[Close]

BLAST of Carg18679 vs. ExPASy TrEMBL
Match: A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.3e-121
Identity = 233/247 (94.33%), Postives = 236/247 (95.55%), Query Frame = 0


Query: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIAT 60
           MA  ISPLAFFSAAAASTG TAPKL     PQKPQIIP+LQSKPSLSSLTAA SAIAIA 
Sbjct: 24  MATAISPLAFFSAAAASTGTTAPKL-----PQKPQIIPILQSKPSLSSLTAACSAIAIAA 83

Query: 61  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120
           IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVSKV
Sbjct: 84  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKV 143

Query: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180
           EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS
Sbjct: 144 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 203

Query: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHES 240
           AEEKKDENGQIYYEYEID AGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVHES
Sbjct: 204 AEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES 263

Query: 241 FKTIGSY 248
           FKTIGSY
Sbjct: 264 FKTIGSY 265

[Close]

BLAST of Carg18679 vs. ExPASy TrEMBL
Match: A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.5e-109
Identity = 211/251 (84.06%), Postives = 226/251 (90.04%), Query Frame = 0


Query: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTA----AGSAI 60
           MA  I+PLAF ++ AASTG TAPK PQ  P  KPQ IP+LQSK  LS  TA    A +AI
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60

Query: 61  AIATIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERL 120
           A+A I++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKERL
Sbjct: 61  AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120

Query: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 181 ESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRH 240
           ESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRH
Sbjct: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240

Query: 241 VHESFKTIGSY 248
           VHESFKT+GSY
Sbjct: 241 VHESFKTVGSY 250

[Close]

BLAST of Carg18679 vs. ExPASy TrEMBL
Match: A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.5e-109
Identity = 211/251 (84.06%), Postives = 226/251 (90.04%), Query Frame = 0


Query: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTA----AGSAI 60
           MA  I+PLAF ++ AASTG TAPK PQ  P  KPQ IP+LQSK  LS  TA    A +AI
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60

Query: 61  AIATIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERL 120
           A+A I++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKERL
Sbjct: 61  AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120

Query: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 181 ESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRH 240
           ESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRH
Sbjct: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240

Query: 241 VHESFKTIGSY 248
           VHESFKT+GSY
Sbjct: 241 VHESFKTVGSY 250

[Close]

BLAST of Carg18679 vs. ExPASy TrEMBL
Match: A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.6e-109
Identity = 215/250 (86.00%), Postives = 225/250 (90.00%), Query Frame = 0


Query: 1   MAAVISPLAFFSA-AAASTGATAPKLPQIPPPQKPQIIPVLQSKPS--LSSLTAAGSAIA 60
           MA  ISPLAFFSA AAA+TGA  PK  Q PP  KP +IPVLQS PS  LSSL+A  SAIA
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKP-LIPVLQSNPSGPLSSLSAPISAIA 60

Query: 61  IATIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLV 120
           +A I+ST+PPSLADAG AFNVYYGTAASAANYGG GGNA+KKDSAEY+YDVP+GWKERLV
Sbjct: 61  VAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHV 240
             SAEEKKDENGQIYY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW RDQDMLRHV
Sbjct: 181 GISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHV 240

Query: 241 HESFKTIGSY 248
           HESFKT+GSY
Sbjct: 241 HESFKTVGSY 249

[Close]

BLAST of Carg18679 vs. ExPASy TrEMBL
Match: A0A0A0K624 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.5e-106
Identity = 207/250 (82.80%), Postives = 223/250 (89.20%), Query Frame = 0


Query: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSS---LTAAGSAIA 60
           MA  I+PLAF +    STG TAPK PQ     KPQ IP+LQSKP LSS   ++ A +AIA
Sbjct: 1   MATAIAPLAFLT----STGTTAPKPPQASSLPKPQ-IPILQSKPPLSSTAPISIAATAIA 60

Query: 61  IATIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLV 120
           +A I+ST+ PSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEY+YDVP+GWKERLV
Sbjct: 61  VAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHV 240
           SF AEEKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTIGSY 248
           H+SFKT+GSY
Sbjct: 241 HDSFKTVGSY 245

[Close]

BLAST of Carg18679 vs. TAIR 10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 228.0 bits (580), Expect = 8.2e-60
Identity = 106/140 (75.71%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 107 DVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSD 166
           +V +GWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFLAG RQL P+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 167 VNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPE 226
           V LQD IA A+   +EE+KDE GQ+YY YEIDG G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 227 WSRDQDMLRHVHESFKTIGS 247
           W+RD D L H+ +SFKT+ S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

The following BLAST results are available for this feature:

BLAST of Carg18679 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575683.1	6.3e-131	100.00	Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma...	[more]
XP_023547955.1	5.9e-129	97.98	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_022991922.1	2.7e-121	94.33	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_038896859.1	1.3e-112	86.45	thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida]	[more]
KAG7025659.1	8.1e-110	86.80	Thylakoid lumenal 19 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. a...	[more]

BLAST of Carg18679 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82658	1.1e-74	64.71	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg18679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN94	1.3e-121	94.33	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]
A0A5D3CG07	1.5e-109	84.06	Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CES2	1.5e-109	84.06	thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1H7M1	5.6e-109	86.00	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]
A0A0A0K624	1.5e-106	82.80	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 S...	[more]

BLAST of Carg18679 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63540.1	8.2e-60	75.71	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 102..242 e-value: 6.5E-12 score: 45.8
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 82..243 e-value: 5.7E-18 score: 67.4
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 5..244
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 5..244
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 101..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18679-RA	Carg18679-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding