Carg18647 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18647
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-box protein 1a-like
Location	Carg_Chr12: 11962315 .. 11964348 (+)
RNA-Seq Expression	Carg18647
Synteny	Carg18647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATAATGATGTAATTATAATATTACACTATAAAACAAACTTAAATGGTAATAACAAATTTCATTGAAAATAAAAAATTCAAGACGCAGCTACAGCTACAGGAAATCGGTCCGCCCGTGTCAAGGAGACGGATTAAGAAGCATCTTTCTTGCAACTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCCACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGGTAATTACGGAACCCTAATCTTTAGCCCTTCACACGGCGTTGCTATTACTGCTCTCACTCTCCCGTTTTGCCTTCTTACATCGGAATCCTCCTCTCTAATTTTTGTGTTATTCATTTCTTAATTCAGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGTAAGTTTATCATCATTTGATCAAGTTCTAAGATATCTGGAATGATCTTCCTCTTAATTTTCTATATTATTTGTATTTTCTTTAGCCATTCACCATTGTTTGTTATGTAGGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGTACGTTTGTTTTTTTTATAAAAACATTTCCTCTCCCTATCCCCAATCCATTCACGCAGACACAATGTGCTATTATTTTCTACCTCGCTCCTTACGGATACTGAGGTGGATGATTGGGCCTCTATGCTGAATATTTAAAGCCATGTCATATTTTCTAATTAGGAGGATGTCGAAGTGCGTTCCCTTCATATCAATGGTTGCTTTTCTGTCAATTCCTCAGACCTTTAGCTTGTTTTTTAACACAGCCATACTGACCTAATCCGTAGTAAGCTAACCTGGGAGGCCAAAATTCTGGAAAAGTGAAAGTCTTCCTATGGATTCTGATACAAGGGAAACTGAGTACGTGTGAGAAGCTTCAATGAAGCGTTCCGAATGGCTGGTGATGTATCCTGTGCAGGAAAGACAAGAGAGCCATTTTCATGTTTTTGTCCACTGCCCATTTTCTGCCGCTATTTGTTGAGCTAAGCATTGTTATGTATTTGGTATGAGTTGATGCTCCCGTAAGACCTCTGAGAATTACTGCCATCCAACTGTTAGGGCATAAGCTAAATGGTCAAATTATAATCAGAGACTTTTTAAGAGGGTTGATTCTAGCTCGGAAAGCTTTTGGGATCTCAGGAAACTCTATTAAGAACTGAACTTGTTATTTAACTTAAAAAGATTGCCTTTTGGATTGATTGATTATTACTCTATCCAACTTACAGTATGAAACATTATTTTGCAATCGCCCTTGATGTGGAATTATAGCAGGAGCCAACGACTGATGATACCTGGTGTTGAATTTTTATATATTTGTAGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCGTTGGGTATGCATTTCACATTCTTGCCCAGCCTTTCAACCACAATTTTTTTTCTAAAAAAATGAATTTTGGTAATTGAAGAAAGCTTTGCCATTTTACAGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTGCTGCTGAGAATATGGATCCTTAAATTCTCATGGATCTCTAATGTTGTCGACGATGAACTCTCTCCATACATGGTTTCTGAAATTTGCGATCTGAAGATGCATTTTGTTGAGCAACTACAATTGTCCAGAGAATTATGTGATTTTATTTGGGAGTTGTTTGTAGAAATAGGCTAGCACTCAAACGTTAGTTCTTGTTTTACCGTTTACCATTTCTGTACTTGTATTTATGTTAACATCTCACTTGGTTCATCTGGAAAATTTGGATCTTATTGTTGCCTATTTGCTCTTCGGTTCTTGTTTGTCTATCGGATATTCTTCTTCCCATAATATAATCGTGTTCTTCACCGAATGAATTCTTCTAAAGTGATCTTACTTTAG

mRNA sequence

ACATAATGATGTAATTATAATATTACACTATAAAACAAACTTAAATGGTAATAACAAATTTCATTGAAAATAAAAAATTCAAGACGCAGCTACAGCTACAGGAAATCGGTCCGCCCGTGTCAAGGAGACGGATTAAGAAGCATCTTTCTTGCAACTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCCACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCGTTGGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTGCTGCTGAGAATATGGATCCTTAAATTCTCATGGATCTCTAATGTTGTCGACGATGAACTCTCTCCATACATGGTTTCTGAAATTTGCGATCTGAAGATGCATTTTGTTGAGCAACTACAATTGTCCAGAGAATTATGTGATTTTATTTGGGAGTTGTTTGTAGAAATAGGCTAGCACTCAAACGTTAGTTCTTGTTTTACCGTTTACCATTTCTGTACTTGTATTTATGTTAACATCTCACTTGGTTCATCTGGAAAATTTGGATCTTATTGTTGCCTATTTGCTCTTCGGTTCTTGTTTGTCTATCGGATATTCTTCTTCCCATAATATAATCGTGTTCTTCACCGAATGAATTCTTCTAAAGTGATCTTACTTTAG

Coding sequence (CDS)

ATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCCACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCGTTGGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAG

Protein sequence

MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Homology

[Close]

BLAST of Carg18647 vs. NCBI nr
Match: XP_022937741.1 (RING-box protein 1a-like [Cucurbita moschata] >XP_022966069.1 RING-box protein 1a-like isoform X1 [Cucurbita maxima] >XP_023537816.1 RING-box protein 1a-like [Cucurbita pepo subsp. pepo] >KAG7021354.1 RING-box protein 1a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.3 bits (643), Expect = 2.0e-63
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 114

[Close]

BLAST of Carg18647 vs. NCBI nr
Match: XP_015889019.1 (RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [Momordica charantia])

HSP 1 Score: 248.8 bits (634), Expect = 2.2e-62
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Carg18647 vs. NCBI nr
Match: XP_007218617.1 (RING-box protein 1a [Prunus persica] >XP_008232851.1 PREDICTED: RING-box protein 1a-like [Prunus mume] >XP_008232852.1 PREDICTED: RING-box protein 1a-like [Prunus mume] >XP_034202694.1 RING-box protein 1a-like [Prunus dulcis] >XP_034202695.1 RING-box protein 1a-like [Prunus dulcis] >PQP92865.1 RING-box protein 1a [Prunus yedoensis var. nudiflora] >CAB4269841.1 unnamed protein product [Prunus armeniaca] >ONI22810.1 hypothetical protein PRUPE_2G152700 [Prunus persica] >CAB4300233.1 unnamed protein product [Prunus armeniaca] >VVA19386.1 PREDICTED: RING-box [Prunus dulcis])

HSP 1 Score: 247.7 bits (631), Expect = 4.9e-62
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVPVGEASSSAGPSSTK+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPVGEASSSAGPSSTKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Carg18647 vs. NCBI nr
Match: XP_004306863.1 (PREDICTED: RING-box protein 1a-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 246.9 bits (629), Expect = 8.4e-62
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV M+PVGE SSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMIPVGEGSSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Carg18647 vs. NCBI nr
Match: XP_027926839.1 (RING-box protein 1a isoform X2 [Vigna unguiculata])

HSP 1 Score: 246.1 bits (627), Expect = 1.4e-61
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDVTMVP GE SSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVTMVPAGEPSSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Carg18647 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.8e-60
Identity = 106/115 (92.17%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 60
           +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 4   LDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLC 63

Query: 61  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of Carg18647 vs. ExPASy Swiss-Prot
Match: Q9M2B0 (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-52
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 60
           ++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 4   LNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLC 63

Query: 61  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           IEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 64  IECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of Carg18647 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-52
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 7   MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 66
           M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 67  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of Carg18647 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-52
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 7   MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 66
           M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 67  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of Carg18647 vs. ExPASy Swiss-Prot
Match: Q9W5E1 (RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.3e-52
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 19  PSSTKK--PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 78
           PSS+ K   KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV
Sbjct: 11  PSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70

Query: 79  AWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           AWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct: 71  AWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108

[Close]

BLAST of Carg18647 vs. ExPASy TrEMBL
Match: A0A6J1HSM1 (RING-box protein 1a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465785 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 9.7e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 114

[Close]

BLAST of Carg18647 vs. ExPASy TrEMBL
Match: A0A6J1FB79 (RING-box protein 1a-like OS=Cucurbita moschata OX=3662 GN=LOC111444049 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 9.7e-64
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 114

[Close]

BLAST of Carg18647 vs. ExPASy TrEMBL
Match: A0A6P4A6G4 (RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Carg18647 vs. ExPASy TrEMBL
Match: A0A6J1DPM4 (RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Carg18647 vs. ExPASy TrEMBL
Match: M5X2V0 (RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_2G152700 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.4e-62
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 60
           +DSDV MVPVGEASSSAGPSSTK+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI
Sbjct: 4   LDSDVPMVPVGEASSSAGPSSTKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCI 63

Query: 61  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Carg18647 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 232.3 bits (591), Expect = 2.0e-61
Identity = 106/115 (92.17%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 60
           +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 4   LDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLC 63

Query: 61  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 64  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of Carg18647 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 218.8 bits (556), Expect = 2.3e-57
Identity = 106/139 (76.26%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 60
           +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 4   LDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLC 63

Query: 61  IECQANQASATSEECTVAW------------------------GVCNHAFHFHCISRWLK 115
           IECQANQASATSEECTVAW                        GVCNHAFHFHCISRWLK
Sbjct: 64  IECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISRWLK 123

[Close]

BLAST of Carg18647 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 218.4 bits (555), Expect = 3.0e-57
Identity = 105/133 (78.95%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWD----------------- 60
           +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAW                  
Sbjct: 4   LDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLSMFR 63

Query: 61  -IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 115
            IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP
Sbjct: 64  YIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 123

[Close]

BLAST of Carg18647 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-53
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLC 60
           ++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLC
Sbjct: 4   LNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLC 63

Query: 61  IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 115
           IEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 64  IECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of Carg18647 vs. TAIR 10
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11 )

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-16
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 24  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 83
           K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNH 61

Query: 84  AFHFHCISRWL--KTRQV-CPLDNSEWEFQK 112
           AFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87

The following BLAST results are available for this feature:

BLAST of Carg18647 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937741.1	2.0e-63	100.00	RING-box protein 1a-like [Cucurbita moschata] >XP_022966069.1 RING-box protein 1...	[more]
XP_015889019.1	2.2e-62	98.25	RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [...	[more]
XP_007218617.1	4.9e-62	97.37	RING-box protein 1a [Prunus persica] >XP_008232851.1 PREDICTED: RING-box protein...	[more]
XP_004306863.1	8.4e-62	96.49	PREDICTED: RING-box protein 1a-like [Fragaria vesca subsp. vesca]	[more]
XP_027926839.1	1.4e-61	96.49	RING-box protein 1a isoform X2 [Vigna unguiculata]	[more]

BLAST of Carg18647 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X7	2.8e-60	92.17	RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1	[more]
Q9M2B0	2.8e-52	83.48	RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1	[more]
P62877	3.7e-52	83.33	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1	[more]
P62878	3.7e-52	83.33	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1	[more]
Q9W5E1	6.3e-52	91.84	RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1	[more]

BLAST of Carg18647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HSM1	9.7e-64	100.00	RING-box protein 1a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465785 ...	[more]
A0A6J1FB79	9.7e-64	100.00	RING-box protein 1a-like OS=Cucurbita moschata OX=3662 GN=LOC111444049 PE=4 SV=1	[more]
A0A6P4A6G4	1.1e-62	98.25	RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1	[more]
A0A6J1DPM4	1.1e-62	98.25	RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=...	[more]
M5X2V0	2.4e-62	97.37	RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_2G152700 ...	[more]

BLAST of Carg18647 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20570.1	2.0e-61	92.17	RING-box 1	[more]
AT5G20570.2	2.3e-57	76.26	RING-box 1	[more]
AT5G20570.3	3.0e-57	78.95	RING-box 1	[more]
AT3G42830.1	2.0e-53	83.48	RING/U-box superfamily protein	[more]
AT3G05870.1	4.4e-16	39.56	anaphase-promoting complex/cyclosome 11	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 15..114 e-value: 1.3E-35 score: 123.5
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 46..104 e-value: 1.7E-25 score: 89.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR11210:SF41	E3 UBIQUITIN-PROTEIN LIGASE RBX1	coord: 1..114
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 1..114
None	No IPR available	CDD	cd16485	mRING-H2-C3H2C2D_RBX1	coord: 46..107 e-value: 4.81835E-44 score: 135.96
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 26..111
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..104 score: 9.30263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18647-RA	Carg18647-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0016462	pyrophosphatase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding