Carg18643 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18643
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L18a-like protein
Location	Carg_Chr12: 11943452 .. 11945467 (-)
RNA-Seq Expression	Carg18643
Synteny	Carg18643

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTAGTCAAGCTAGGTTATTTTATTACCAATTCATCGGATGGCTTGTGGAAGATTGAAAAGCTCCATAGGCTAGTGTCTTCAATTGAGTAGTTTTCTTTTTAGTCAACATGAAAGTCTGATGAATTTGATAAAAGAAACTTGGATTATTTGGATTTTAAATACCAAACTAGGGGGAATTTTCATTCCAGATGCAATTCTTCTGATTGCTGCATCTTGTCGGGTGTCATTTGATTATATTGTTCTAACTACTGAGTAGATTTTAATCTCTTGACACAGGTGTAGAAAGTGGATAGCGCAAACTTGAAGAGCTCATCCTTCCATAAACTCCAGCTTCAACATGGATCCAAGTACCGTAATTCTTCTTATAACTTGGATTCCTCATAATAATAATAAAAAAGAAGGCATGATGTTTTATTTTGTTGGGTTGTAACATAGTTCTTGCCTAGTAATTTCTTTAATATTCAAGGTTCATTAAGGTGTCTTGGACATTCATATGTGCCTATGCTCATTGTTATGCTTTCACTCCTTAGTTATACGTTTCATTAAAGAATGTAGTCACATTCAGAAATTGAAGCTAATTTCGTGTCTAATAATTGGTTTATGACACTCTGTTGGCAGTCTTCATGATAGCAATAACACAAGATCGAACTGAAATAATAGTTTTTACAAAATAGATGGAACAATTTCTTGAGTTGTGAACATGTTTTCTGGATGTTAAAAATGCAGAAGTTGAGCAGACAGTGCAACTGGTGGAATCGGTCTCTGATAAGCATCCTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCCATATTCAAAGGTAAATCAGGGATAATAAAACATGCTGGCTAGGACATTTTTATAATAAAACATGCTGGGCTAGGACATTAGGACATTTTTGTTGAGGATTGTTGGGAGGAAGTCTTGGCTAATTTAGGGAATGATAATGGGTTTATAAGTAACGAATACATCTCTATTGGTATGAGGCCTTCTTGGGAAGTCCAATATAAAGACATGAGAGTTTATGCTCAAAGTAGACAATATTATACCATTATGGAGAGTCGTGATTCCTAACAATTTTATGGTCCAATATTACCTTATATTGGTTGCTGGAGTCTTTTGCTTGTCTAGTCATTTATGTCCAAAATGATTAATGATGAAAGCCATCCTTACATTAGTGCTTGTATTCACCTAGGCCAAGAAAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGCATTGGATGGTTCTCGTGAGTATCGTGTAACTTTCTCTGTACAAACAATTTGGGGAACCTGTCGTCAAGTTTACTGATCTTACCTTTGTATCTTTGTCGTTCTTTTCAGTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTTTGGAACGTCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCTGCGTCTGCCATTGCTGTAAGTGTTCCTTTTTTCTTTCCCACTCCCACCCCAACCATGAAAATCTTAGGAAAAACAAACATAATGACATCGAGTAGCCAAATTCCTTACATTGCTATGTACCTTGCCATCTCCCATGAGCTGTTCATTGAACGTGATTCAGCTTCTAAAGAAGCAAAACAATTGTAAATGGTGCAGGCATTTGCATGTTCGGTCATCTTGTTAGTCATCGTAGCTGTTCTCCTATTATAGCCTCCCCTGTCTCTCGACTCGCACTGCATTCTCTTTGCCCCTTCAACCTCAAAGAATTATAAATGAATAAAAACCACATGGAAATAACAATTTGGGCATTACAGTCCCAAACAGAACAGCTTCCGTGGATATGAAGATAAAGATCGAGGGGCTCTGTTGCGGGACAATGGTGATTTCTTTTACTTTTCTTTACATCAAATGTAAATGTTTATAAATCATATTTACATATATTTGCCACCTCTTTCAAG

mRNA sequence

AATTTTAGTCAAGCTAGGTTATTTTATTACCAATTCATCGGATGGCTTGTGGAAGATTGAAAAGCTCCATAGGCTAGTGTCTTCAATTGAGTAGTTTTCTTTTTAGTCAACATGAAAGTCTGATGAATTTGATAAAAGAAACTTGGATTATTTGGATTTTAAATACCAAACTAGGGGGAATTTTCATTCCAGATGCAATTCTTCTGATTGCTGCATCTTGTCGGGTGTCATTTGATTATATTGTTCTAACTACTGAGTAGATTTTAATCTCTTGACACAGGTGTAGAAAGTGGATAGCGCAAACTTGAAGAGCTCATCCTTCCATAAACTCCAGCTTCAACATGGATCCAAAAGTTGAGCAGACAGTGCAACTGGTGGAATCGGTCTCTGATAAGCATCCTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCCATATTCAAAGGCCAAGAAAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGCATTGGATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTTTGGAACGTCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCTGCGTCTGCCATTGCTGCATTTGCATGTTCGGTCATCTTGTTAGTCATCGTAGCTGTTCTCCTATTATAGCCTCCCCTGTCTCTCGACTCGCACTGCATTCTCTTTGCCCCTTCAACCTCAAAGAATTATAAATGAATAAAAACCACATGGAAATAACAATTTGGGCATTACAGTCCCAAACAGAACAGCTTCCGTGGATATGAAGATAAAGATCGAGGGGCTCTGTTGCGGGACAATGGTGATTTCTTTTACTTTTCTTTACATCAAATGTAAATGTTTATAAATCATATTTACATATATTTGCCACCTCTTTCAAG

Coding sequence (CDS)

ATGGATCCAAAAGTTGAGCAGACAGTGCAACTGGTGGAATCGGTCTCTGATAAGCATCCTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCCATATTCAAAGGCCAAGAAAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGCATTGGATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTTTGGAACGTCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCTGCGTCTGCCATTGCTGCATTTGCATGTTCGGTCATCTTGTTAGTCATCGTAGCTGTTCTCCTATTATAG

Protein sequence

MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACSVILLVIVAVLLL

Homology

[Close]

BLAST of Carg18643 vs. NCBI nr
Match: KAG7021350.1 (hypothetical protein SDJN02_18039 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-66
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLVIVAVLLL 133
           VILLVIVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of Carg18643 vs. NCBI nr
Match: XP_022937742.1 (uncharacterized protein LOC111444050 [Cucurbita moschata] >XP_022937743.1 uncharacterized protein LOC111444050 [Cucurbita moschata])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLVIVAVLLL 133
           VILLVIVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of Carg18643 vs. NCBI nr
Match: KAG6586492.1 (hypothetical protein SDJN03_19225, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.3 bits (669), Expect = 2.2e-66
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESVSDKHPDLLRPSAR+CSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARLCSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLVIVAVLLL 133
           VILLVIVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of Carg18643 vs. NCBI nr
Match: XP_023538492.1 (uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo] >XP_023538493.1 uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKD  DHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDACDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLVIVAVLLL 133
           VILLVIVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of Carg18643 vs. NCBI nr
Match: XP_022965444.1 (uncharacterized protein LOC111465349 [Cucurbita maxima] >XP_022965445.1 uncharacterized protein LOC111465349 [Cucurbita maxima])

HSP 1 Score: 257.7 bits (657), Expect = 5.5e-65
Identity = 128/132 (96.97%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESV DKHPDLLRPSARICSIF+GQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN RRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLVIVAVLLL 133
           VILL+IVAVLLL
Sbjct: 121 VILLIIVAVLLL 132

[Close]

BLAST of Carg18643 vs. ExPASy TrEMBL
Match: A0A6J1FC32 (uncharacterized protein LOC111444050 OS=Cucurbita moschata OX=3662 GN=LOC111444050 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.3e-67
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLVIVAVLLL 133
           VILLVIVAVLLL
Sbjct: 121 VILLVIVAVLLL 132

[Close]

BLAST of Carg18643 vs. ExPASy TrEMBL
Match: A0A6J1HNQ0 (uncharacterized protein LOC111465349 OS=Cucurbita maxima OX=3661 GN=LOC111465349 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 128/132 (96.97%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIG 60
           MDPKVEQTVQLVESV DKHPDLLRPSARICSIF+GQEKDVSDHTKNKYTLLKDVEDLQIG
Sbjct: 1   MDPKVEQTVQLVESVPDKHPDLLRPSARICSIFEGQEKDVSDHTKNKYTLLKDVEDLQIG 60

Query: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFACS 120
           LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN RRDPRERAGLAASAIAAFACS
Sbjct: 61  LYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNTRRDPRERAGLAASAIAAFACS 120

Query: 121 VILLVIVAVLLL 133
           VILL+IVAVLLL
Sbjct: 121 VILLIIVAVLLL 132

[Close]

BLAST of Carg18643 vs. ExPASy TrEMBL
Match: A0A1S3CAZ9 (uncharacterized protein LOC103498658 OS=Cucumis melo OX=3656 GN=LOC103498658 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.0e-56
Identity = 111/133 (83.46%), Postives = 122/133 (91.73%), Query Frame = 0


Query: 1   MDP--KVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQ 60
           MDP  K++QTVQLV+SVSDKH DLLRPSARICSIFKGQ KD  DH ++KYTLL+DVED Q
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 61  IGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFA 120
           +GLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN RRDPRERAGLAASAIAA A
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 121 CSVILLVIVAVLL 132
           CS+ILL++VAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of Carg18643 vs. ExPASy TrEMBL
Match: A0A5D3CGZ6 (60S ribosomal protein L18a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001100 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.0e-56
Identity = 111/133 (83.46%), Postives = 122/133 (91.73%), Query Frame = 0


Query: 1   MDP--KVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQ 60
           MDP  K++QTVQLV+SVSDKH DLLRPSARICSIFKGQ KD  DH ++KYTLL+DVED Q
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 61  IGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFA 120
           +GLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN RRDPRERAGLAASAIAA A
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 121 CSVILLVIVAVLL 132
           CS+ILL++VAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of Carg18643 vs. ExPASy TrEMBL
Match: A0A6J1G4J6 (uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC111450686 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.5e-55
Identity = 112/134 (83.58%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MDP--KVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQ 60
           MDP  K++ TVQLV+SVSD+H DLLRPSARICSIFKGQ KD SDH ++KYTLL+DVED Q
Sbjct: 1   MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 61  IGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLAASAIAAFA 120
           +GLYDKPLPCFGCGIGWFSFLLGFLFP+MWYYATILYFWN RRDPRERAGLAAS+IAA A
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAGLAASSIAALA 120

Query: 121 CSVILLVIVAVLLL 133
           CSVILLV+VAV LL
Sbjct: 121 CSVILLVVVAVRLL 134

[Close]

BLAST of Carg18643 vs. TAIR 10
Match: AT4G26060.1 (Ribosomal protein L18ae family )

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-35
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 8   TVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLP 67
           + +LV+SV+DKH  L+RP A+  S      KD     K +YTL+KDV++++ G+YDKPLP
Sbjct: 12  SAELVKSVADKHAGLVRPVAKYYSAV----KDAMVCGKGRYTLVKDVDEVENGVYDKPLP 71

Query: 68  CFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAAFACSVILLVI 127
           CFGCGIGWFSFLLGF+FP +WYYAT+LYF N  R+DPRERAGLAASAI A   S++LLVI
Sbjct: 72  CFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDPRERAGLAASAITAMGFSLLLLVI 128

[Close]

BLAST of Carg18643 vs. TAIR 10
Match: AT5G57060.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33
Identity = 70/120 (58.33%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 10  QLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCF 69
           +LV+ ++D+H  L++ ++R  S      KD     K +YTL+KDV+D++ G YDKPLPCF
Sbjct: 15  ELVKFIADRHAKLMKQASRHYSAI----KDAMARGKKRYTLVKDVDDMETGAYDKPLPCF 74

Query: 70  GCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAAFACSVILLVIVA 129
           GCGIGWFSFLLGF+FP +WYYA  LYF N  R+DPRERAGLAASAI A   S++LLVI A
Sbjct: 75  GCGIGWFSFLLGFMFPFLWYYAAFLYFGNYYRKDPRERAGLAASAITAMGFSLVLLVIFA 130

[Close]

BLAST of Carg18643 vs. TAIR 10
Match: AT5G57060.2 (BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 130.6 bits (327), Expect = 9.5e-31
Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 38  KDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 97
           KD     K +YTL+KDV+D++ G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF 
Sbjct: 12  KDAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFG 71

Query: 98  N-VRRDPRERAGLAASAIAAFACSVILLVIVA 129
           N  R+DPRERAGLAASAI A   S++LLVI A
Sbjct: 72  NYYRKDPRERAGLAASAITAMGFSLVLLVIFA 103

[Close]

BLAST of Carg18643 vs. TAIR 10
Match: AT1G54217.2 (Ribosomal protein L18ae family )

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-23
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 39  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 98
           D+ +  K KY L++ D ED ++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  
Sbjct: 5   DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64

Query: 99  N-VRRDPRERAGLAASAIAAFACSVILLVIVAVLL 132
           +   RDPRER+GLAASAIAA   SV L++ V VL+
Sbjct: 65  SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 99

[Close]

BLAST of Carg18643 vs. TAIR 10
Match: AT1G54217.1 (Ribosomal protein L18ae family )

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-22
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 39  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFW 98
           ++ +  K KY L++ D ED ++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  
Sbjct: 4   NLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 63

Query: 99  N-VRRDPRERAGLAASAIAAFACSVILLVIVAVLL 132
           +   RDPRER+GLAASAIAA   SV L++ V VL+
Sbjct: 64  SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 98

The following BLAST results are available for this feature:

BLAST of Carg18643 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021350.1	1.3e-66	100.00	hypothetical protein SDJN02_18039 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022937742.1	1.7e-66	99.24	uncharacterized protein LOC111444050 [Cucurbita moschata] >XP_022937743.1 unchar...	[more]
KAG6586492.1	2.2e-66	99.24	hypothetical protein SDJN03_19225, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023538492.1	1.5e-65	98.48	uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo] >XP_023538493....	[more]
XP_022965444.1	5.5e-65	96.97	uncharacterized protein LOC111465349 [Cucurbita maxima] >XP_022965445.1 uncharac...	[more]

BLAST of Carg18643 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18643 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FC32	8.3e-67	99.24	uncharacterized protein LOC111444050 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]
A0A6J1HNQ0	2.7e-65	96.97	uncharacterized protein LOC111465349 OS=Cucurbita maxima OX=3661 GN=LOC111465349...	[more]
A0A1S3CAZ9	5.0e-56	83.46	uncharacterized protein LOC103498658 OS=Cucumis melo OX=3656 GN=LOC103498658 PE=...	[more]
A0A5D3CGZ6	5.0e-56	83.46	60S ribosomal protein L18a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1G4J6	1.5e-55	83.58	uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]

BLAST of Carg18643 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26060.1	1.3e-35	61.98	Ribosomal protein L18ae family	[more]
AT5G57060.1	1.2e-33	58.33	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-...	[more]
AT5G57060.2	9.5e-31	68.48	BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR...	[more]
AT1G54217.2	7.3e-23	58.95	Ribosomal protein L18ae family	[more]
AT1G54217.1	2.8e-22	57.89	Ribosomal protein L18ae family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46666	60S RIBOSOMAL L18A-LIKE PROTEIN	coord: 7..128
None	No IPR available	PANTHER	PTHR46666:SF6	BNAC08G12080D PROTEIN	coord: 7..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18643-RA	Carg18643-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane