Carg18640 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18640
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit
Location	Carg_Chr12: 11933257 .. 11936304 (+)
RNA-Seq Expression	Carg18640
Synteny	Carg18640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGATCCTTTTCTTTGATGAACGAGTGTGCTATCGTAGTCTTGTACCAGTGTATACTTATTTTTCCTTTATGTGTAAAGTTGACAATATTATAGTGTTTTCTTATTTGAATTGTAGCAACTTTGGTAGCTTACAATTACGTTCGAACGAAGGGTACTTATCAAACCATGTAGTACTTGAAAGATTATTAAGAAAATTAAGTGAAAATGCCATTTTGTCTTAAATTGTGATTCTACTTGTTAGTTGGTTTTCCCTTTCTTTAGCACCTTATCTTCTAGTGTGCATGTTCAGTACCACATATTGTCTTACCTTATTGACATACTTTTAAGTGTATCATGTTTTGAATTGAGCTAAGTATGGTGAGAAGAACATTTACATTGCTTTATCACCTTGTTTGGCCCATTATATGTGATTTCAGACTTGCTGACGAAACATGATGGCCATTCCACGTGAGAACTTTGCCCAGAAAAATCTTGATCAAAACTCTGTCCATTTATTGTTTCCATATACTGTTGATTCTATGCCCTGGCGGAATTCAAATGAACAGAAGATTCAAATGGCTTTGTCTGATAATATAACTCTAAAGAATGAAACTCCCCCACAACCTCACCACGAACAATCAGGCCTTCGGTTACGAGATCAGGAGTCATCCACAGCCTATTCAATGGGTCAATCTCTTCATAAAGTCCGTGCTATGGAAGTGCAAAATGCTCAAGAGCAATGTATTTCTTCAGAGTCTGGTACTTTCATCCTCGGGTTCCACGGGTTATTTATTTTTCATTCAATGTTTATTTGATTAGTAGTAGTGTGGGTTATTTGATTAGTAGTAGTGTGGGTCACCTTGACATGGTTAACAAAACAAGAAATTGAAAAATGAGGAGTATGTGGAGCTCCAATACTATCACTGTATTAATGACTTGCTAAGGCATGAAACTTTAACCCCTGTGGCACCCTTAGAGTCTCGGACACTTGGTTAAGGACGGTAGCTGAACTGCTGAAGGGCTAACGAATACGAATTTTATGCATTCCTCAAATGCAGCTGAAGGGCTAATGAATACGAATTTTATGCATTCCTCAAATGCATTCTATTCTATTTATACAGATACCGAACGATATTAGAGTGGTTAAGGATGTTTGCAGCAGTAAAAGTTTTTTGCCCTACTTATCTTTTACATGTTTTCAACGTTCCGGATGGGTTTTAGGTTATCTAACCTTTATTAAGTCTTTCTGATTCAGGTCTAGATGAAAATTATGGCGAGAGCGTAGAGAATCAGATGAAACCAGTTATTTTGTTTAGCAACCCTGAATATATGTTCAATCCTCCCCAAGTTGATAGCAGCCATTTAATGGTAGGTTAAACTGTGTTATTTGATTTGTGCTTCTTATTTGCTGCTACGCTAATTTGTCTCTCAATTTTAGGCTCGAGTGCCGTATCCATATCCATACGTAGATCCTTCGTATGGAGGGCTATTCTGCAGTGCCTATGGTCAGATGGCTAGTAATGTAAGTTTTGTTTTGTTGTTGGTTATCTTGTTTCATCTCATCCTTTGAACTTATCTGGTTCTTGACTGATGTCAATTACATGATTCTGATCAGACTGAAGCTCAAGTAAATTCCAATGTTGTTGGAAGTACACCTGCACGAGTCCCCTTGCCGCATGGTCTCGCTGAAGATGGGCTGATCTATGTCAATGCAAAACAATACCATGGAATCATTAGAAGAAGGAAGTCTCGAGCAAAGCTCGAGGCTCAAAATAAAGTCATAAGAAATCGAAAGGTATCTCTATCCACCGAGCTCCGTTTGAATTTGATTCCTTCTTTCTGTTGATTTTGAACACTTCCTATAGACAATCAATTCCGATGGAATCCGTGGGACTTAAATATAGGATGAGAAGAACTCAAGCGTAATAATTTTGAAAGAGAAAGTAAATGTTTCTCGGACTTCCTAAGTTGGCATGTGTAATGGCCCAAGCCCTCCACTAGCAAATATTGTCCATTTTGGGCTTTCTCTTTCAGGCTTCCCTAAAACGCGTCTGTTAGGGAAAAGGTTTCCACACCCTTATGAAGGGTGTTTTGTTCTCTTCCCTAACCAAGACGGGATATCACAATCCACCCCCGTTCAGGGGGCCCAGTGTCCTTGTCAGCACTTGTTCCTGGGACCCCTACCAAATCCACCCCCTTCGAGGCCCAGCGTCCTTACTGGCACACCGCCTCGTGTCTACCCCCTTCAGGGAATAGTCTCCTCGTTGGCACGTCGTCCGGTGTCTAACTCTGATACCATTTGTGACGGCCCAAGCCCACTGTTAGGAGATATTGTCCTCTTTGGGCTTTCCTTTCGAGCTGCCCCTCAAGGTTTTTAAAACGTATCTGCTAGGGAAAGGTTTCCACACCCTTGGGTGTTTTGCTCTACTCTCCAACCAACGTGGGATGTCACATGCCCTAAAGGGGAAAGGGGAAGCCTATAGCTTGTATTTCAATTGCATTACATTTTCTGCTTCATGTTTGATGACAGCAGCACACTTGCACTGTTCTATTTGTTCATAGTGTTTATATGAACTAATCTCTCACTTTTTTATTAGACAACGACATCATTTCACTTTTATGCTCAAATTATCCCTTCATTGCAGCCATATCTTCACGAGTCCCGACATCGTCATGCAGTGAACAGAGTGAGGGGATCTGGTGGACGCTTTCTCAGCGCAAATAAAGACCAGCCACCCGACCATATAACCCCTCCTCCGACCGATTGGTGCCAACAGAAAGACACACCAGACTTCAATACCTGTAGCTCCGAAACTGGCGACCCTGGCACCATGACTGCAACTTGCTCTGAGACCACAAGCATCTCTAGTGGCTCAGTAATGTTTGGTCGGACATGGTCAGACAGTCAGTTCTCCGCCGTCTCTTCCCGTGGTGGCTTTGTGCACGATGGAGCGTGAAACCATGCATCAGTTGTCTAATGAAAAACGGGGAGGTGGAAGAAGAGCAGACCACCAGAAGCCTCCACATGATTCAATTAGACCCCGGCAAATCATCCTTGGCTTTGTT

mRNA sequence

AAAAGATCCTTTTCTTTGATGAACGAGTGTGCTATCGTAGTCTTGTACCAGTGTATACTTATTTTTCCTTTATGTGTAAAGTTGACAATATTATAGTGTTTTCTTATTTGAATTGTAGCAACTTTGGTAGCTTACAATTACGTTCGAACGAAGGGTACTTATCAAACCATGTAGTACTTGAAAGATTATTAAGAAAATTAAGTGAAAATGCCATTTTGTCTTAAATTGTGATTCTACTTGTTAGTTGGTTTTCCCTTTCTTTAGCACCTTATCTTCTAGTGTGCATGTTCAGTACCACATATTGTCTTACCTTATTGACATACTTTTAAGTGTATCATGTTTTGAATTGAGCTAAGTATGGTGAGAAGAACATTTACATTGCTTTATCACCTTGTTTGGCCCATTATATGTGATTTCAGACTTGCTGACGAAACATGATGGCCATTCCACGTGAGAACTTTGCCCAGAAAAATCTTGATCAAAACTCTGTCCATTTATTGTTTCCATATACTGTTGATTCTATGCCCTGGCGGAATTCAAATGAACAGAAGATTCAAATGGCTTTGTCTGATAATATAACTCTAAAGAATGAAACTCCCCCACAACCTCACCACGAACAATCAGGCCTTCGGTTACGAGATCAGGAGTCATCCACAGCCTATTCAATGGGTCAATCTCTTCATAAAGTCCGTGCTATGGAAGTGCAAAATGCTCAAGAGCAATGTATTTCTTCAGAGTCTGGTCTAGATGAAAATTATGGCGAGAGCGTAGAGAATCAGATGAAACCAGTTATTTTGTTTAGCAACCCTGAATATATGTTCAATCCTCCCCAAGTTGATAGCAGCCATTTAATGGCTCGAGTGCCGTATCCATATCCATACGTAGATCCTTCGTATGGAGGGCTATTCTGCAGTGCCTATGGTCAGATGGCTAGTAATACTGAAGCTCAAGTAAATTCCAATGTTGTTGGAAGTACACCTGCACGAGTCCCCTTGCCGCATGGTCTCGCTGAAGATGGGCTGATCTATGTCAATGCAAAACAATACCATGGAATCATTAGAAGAAGGAAGTCTCGAGCAAAGCTCGAGGCTCAAAATAAAGTCATAAGAAATCGAAAGCCATATCTTCACGAGTCCCGACATCGTCATGCAGTGAACAGAGTGAGGGGATCTGGTGGACGCTTTCTCAGCGCAAATAAAGACCAGCCACCCGACCATATAACCCCTCCTCCGACCGATTGGTGCCAACAGAAAGACACACCAGACTTCAATACCTGTAGCTCCGAAACTGGCGACCCTGGCACCATGACTGCAACTTGCTCTGAGACCACAAGCATCTCTAGTGGCTCAGTAATGTTTGGTCGGACATGGTCAGACAGTCAGTTCTCCGCCGTCTCTTCCCGTGGTGGCTTTGTGCACGATGGAGCGTGAAACCATGCATCAGTTGTCTAATGAAAAACGGGGAGGTGGAAGAAGAGCAGACCACCAGAAGCCTCCACATGATTCAATTAGACCCCGGCAAATCATCCTTGGCTTTGTT

Coding sequence (CDS)

ATGATGGCCATTCCACGTGAGAACTTTGCCCAGAAAAATCTTGATCAAAACTCTGTCCATTTATTGTTTCCATATACTGTTGATTCTATGCCCTGGCGGAATTCAAATGAACAGAAGATTCAAATGGCTTTGTCTGATAATATAACTCTAAAGAATGAAACTCCCCCACAACCTCACCACGAACAATCAGGCCTTCGGTTACGAGATCAGGAGTCATCCACAGCCTATTCAATGGGTCAATCTCTTCATAAAGTCCGTGCTATGGAAGTGCAAAATGCTCAAGAGCAATGTATTTCTTCAGAGTCTGGTCTAGATGAAAATTATGGCGAGAGCGTAGAGAATCAGATGAAACCAGTTATTTTGTTTAGCAACCCTGAATATATGTTCAATCCTCCCCAAGTTGATAGCAGCCATTTAATGGCTCGAGTGCCGTATCCATATCCATACGTAGATCCTTCGTATGGAGGGCTATTCTGCAGTGCCTATGGTCAGATGGCTAGTAATACTGAAGCTCAAGTAAATTCCAATGTTGTTGGAAGTACACCTGCACGAGTCCCCTTGCCGCATGGTCTCGCTGAAGATGGGCTGATCTATGTCAATGCAAAACAATACCATGGAATCATTAGAAGAAGGAAGTCTCGAGCAAAGCTCGAGGCTCAAAATAAAGTCATAAGAAATCGAAAGCCATATCTTCACGAGTCCCGACATCGTCATGCAGTGAACAGAGTGAGGGGATCTGGTGGACGCTTTCTCAGCGCAAATAAAGACCAGCCACCCGACCATATAACCCCTCCTCCGACCGATTGGTGCCAACAGAAAGACACACCAGACTTCAATACCTGTAGCTCCGAAACTGGCGACCCTGGCACCATGACTGCAACTTGCTCTGAGACCACAAGCATCTCTAGTGGCTCAGTAATGTTTGGTCGGACATGGTCAGACAGTCAGTTCTCCGCCGTCTCTTCCCGTGGTGGCTTTGTGCACGATGGAGCGTGA

Protein sequence

MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHHEQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVILFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTSISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA

Homology

[Close]

BLAST of Carg18640 vs. NCBI nr
Match: KAG7021347.1 (Nuclear transcription factor Y subunit A-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 667.2 bits (1720), Expect = 7.6e-188
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH
Sbjct: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI
Sbjct: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180
           LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS
Sbjct: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180

Query: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240
           TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV
Sbjct: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240

Query: 241 NRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS 300
           NRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS
Sbjct: 241 NRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS 300

Query: 301 ISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 332
           ISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA
Sbjct: 301 ISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 331

[Close]

BLAST of Carg18640 vs. NCBI nr
Match: XP_022938088.1 (nuclear transcription factor Y subunit A-3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 653.7 bits (1685), Expect = 8.7e-184
Identity = 326/331 (98.49%), Postives = 327/331 (98.79%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETP QPHH
Sbjct: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPLQPHH 60

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI
Sbjct: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180
           LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS
Sbjct: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180

Query: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240
           TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV
Sbjct: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240

Query: 241 NRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS 300
           NRVRGSGGRFLSA KDQPPDHITPPPTDWCQQKDTPDFNTCSSETGD GTMTATCSETTS
Sbjct: 241 NRVRGSGGRFLSAKKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDHGTMTATCSETTS 300

Query: 301 ISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 332
           ISSGSVMFGRTWSDS+FSAVSS GGFVHDGA
Sbjct: 301 ISSGSVMFGRTWSDSRFSAVSSSGGFVHDGA 331

[Close]

BLAST of Carg18640 vs. NCBI nr
Match: XP_022965525.1 (nuclear transcription factor Y subunit A-3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 652.9 bits (1683), Expect = 1.5e-183
Identity = 324/331 (97.89%), Postives = 328/331 (99.09%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNET PQPHH
Sbjct: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETLPQPHH 60

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI
Sbjct: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180
           LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFC+AYGQMASNT+AQVNSNVVGS
Sbjct: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCNAYGQMASNTQAQVNSNVVGS 180

Query: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240
           TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV
Sbjct: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240

Query: 241 NRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS 300
           NRVRGSGGRFLSA KDQPP+HITPPPTDWCQ+KDTPDFNTCSSETGDPGTMTATCSETTS
Sbjct: 241 NRVRGSGGRFLSAKKDQPPNHITPPPTDWCQRKDTPDFNTCSSETGDPGTMTATCSETTS 300

Query: 301 ISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 332
           ISSGSVMFGRTWSDSQFSAVSS GGFVHDGA
Sbjct: 301 ISSGSVMFGRTWSDSQFSAVSSSGGFVHDGA 331

[Close]

BLAST of Carg18640 vs. NCBI nr
Match: XP_023537396.1 (nuclear transcription factor Y subunit A-3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 651.4 bits (1679), Expect = 4.3e-183
Identity = 326/331 (98.49%), Postives = 327/331 (98.79%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH
Sbjct: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI
Sbjct: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180
           LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNT+AQVNSNVVGS
Sbjct: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTQAQVNSNVVGS 180

Query: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240
           TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRH HAV
Sbjct: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHCHAV 240

Query: 241 NRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS 300
           NRVRGSGGRFLSA KDQPPDHIT PPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS
Sbjct: 241 NRVRGSGGRFLSAKKDQPPDHIT-PPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS 300

Query: 301 ISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 332
           ISSGSVMFGRTWSDSQFSAVSS GGFVHDGA
Sbjct: 301 ISSGSVMFGRTWSDSQFSAVSSSGGFVHDGA 330

[Close]

BLAST of Carg18640 vs. NCBI nr
Match: XP_022938084.1 (nuclear transcription factor Y subunit A-3-like isoform X1 [Cucurbita moschata] >XP_022938086.1 nuclear transcription factor Y subunit A-3-like isoform X1 [Cucurbita moschata] >XP_022938087.1 nuclear transcription factor Y subunit A-3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 647.1 bits (1668), Expect = 8.1e-182
Identity = 326/337 (96.74%), Postives = 327/337 (97.03%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETP QPHH
Sbjct: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPLQPHH 60

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI
Sbjct: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASN------TEAQVN 180
           LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASN      TEAQVN
Sbjct: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNLHDSDQTEAQVN 180

Query: 181 SNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHES 240
           SNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHES
Sbjct: 181 SNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHES 240

Query: 241 RHRHAVNRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTAT 300
           RHRHAVNRVRGSGGRFLSA KDQPPDHITPPPTDWCQQKDTPDFNTCSSETGD GTMTAT
Sbjct: 241 RHRHAVNRVRGSGGRFLSAKKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDHGTMTAT 300

Query: 301 CSETTSISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 332
           CSETTSISSGSVMFGRTWSDS+FSAVSS GGFVHDGA
Sbjct: 301 CSETTSISSGSVMFGRTWSDSRFSAVSSSGGFVHDGA 337

[Close]

BLAST of Carg18640 vs. ExPASy Swiss-Prot
Match: Q93ZH2 (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana OX=3702 GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 6.1e-31
Identity = 108/331 (32.63%), Postives = 158/331 (47.73%), Query Frame = 0


Query: 13  NLDQNSVHLLFPYTVDSMPWRNSNEQKI--QMALSDNITLKNETPPQPHHEQSGLRLRDQ 72
           N   ++ H   PY   S+ W       +  +   +++++LK ++ P        +  +DQ
Sbjct: 7   NKKDSATHSTLPYLNTSISWGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQISFQDQ 66

Query: 73  ESSTAYSMGQSLHKVRAMEVQNAQEQ-CISSESGLDENYGESVENQMKPVILFSNPEYMF 132
           +SS+  S GQS  +V +    N   Q   S++SG +    +   +  K   +   P   F
Sbjct: 67  DSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTGFPNIHF 126

Query: 133 NPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPARVPLPH 192
            P Q +         + + Y DP YGGL  + Y   A       N  +V   P RVPLP 
Sbjct: 127 APAQAN---------FSFHYADPHYGGLLAATYLPQAPT----CNPQMVSMIPGRVPLPA 186

Query: 193 GLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVRGSGGR 252
            L E   ++VNAKQYH I+RRR+ RAKLEAQNK+IR RKPYLHESRH HA+ R RGSGGR
Sbjct: 187 ELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGR 246

Query: 253 FLSANK-----------DQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSET 312
           FL+  K           +Q  D +        ++ +   F     +     + T + S+ 
Sbjct: 247 FLNTKKLLQESEQAAAREQEQDKLGQQVN---RKTNMSRFEAHMLQNNKDRSSTTSGSDI 306

Query: 313 TSISSGSVMFGRT-WSDSQFSAVSSRGGFVH 329
           TS+S G+ +FG T +  S F    +R   VH
Sbjct: 307 TSVSDGADIFGHTEFQFSGFPTPINRAMLVH 321

[Close]

BLAST of Carg18640 vs. ExPASy Swiss-Prot
Match: Q9SYH4 (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana OX=3702 GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.4e-27
Identity = 88/235 (37.45%), Postives = 129/235 (54.89%), Query Frame = 0


Query: 28  DSMPWRNSNEQKIQ-MALSDNITLKNETPPQPHHEQSGLRLRDQESSTAYSMGQSLHKVR 87
           +SMP  NSN Q  +  +L+ ++ +     P   H  SGL+L++Q+S+++ S  +      
Sbjct: 14  NSMPTTNSNIQGSESFSLTKDMIMSTTQLPAMKH--SGLQLQNQDSTSSQSTEEESGGGE 73

Query: 88  AMEVQNAQEQCIS----SESGLDENYGESVENQMKPVILFSNPEYMFNPPQVDSSHLMAR 147
                  +    S    + SG  EN G+ +EN  K +   S    M +   V  +    +
Sbjct: 74  VASFGEYKRYGCSIVNNNLSGYIENLGKPIENYTKSITTSS----MVSQDSVFPAPTSGQ 133

Query: 148 VPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPARVPLPHGLAEDGLIYVNAK 207
           + +     + S+   F +   + AS   A  +  ++G   +RVPLPH + E+  I+VNAK
Sbjct: 134 ISWSLQCAETSHFNGFLAP--EYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAK 193

Query: 208 QYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVRGSGGRFLSANKDQ 258
           QYH I+RRRK RAKLEAQNK+I+ RKPYLHESRH HA+ R RGSGGRFL+  K Q
Sbjct: 194 QYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQ 240

[Close]

BLAST of Carg18640 vs. ExPASy Swiss-Prot
Match: Q9LVJ7 (Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana OX=3702 GN=NFYA6 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.9e-25
Identity = 87/262 (33.21%), Postives = 126/262 (48.09%), Query Frame = 0


Query: 23  FPYTVDSMP-----WRNSNEQKIQMALSDNITLKNETPPQPHHEQSGLRLRDQESSTAYS 82
           F  + DS+P     W NS      +  S ++T  N        +Q+G +++  +SS+  S
Sbjct: 4   FHSSKDSLPCPATSWDNSVFTNSNVQGSSSLTDNNTLSLTMEMKQTGFQMQHYDSSSTQS 63

Query: 83  MGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVILFSNPEYMFNPPQVDSS 142
            G   +              ++S S     YG +       +++     Y  NP     S
Sbjct: 64  TGGESYSE------------VASLSEPTNRYGHN-------IVVTHLSGYKENPENPIGS 123

Query: 143 HLMARV------------PYP-YPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPAR 202
           H +++V             +P +  V P + G     Y    +    Q+     G  P+R
Sbjct: 124 HSISKVSQDSVVLPIEAASWPLHGNVTPHFNGFLSFPYASQHTVQHPQIR----GLVPSR 183

Query: 203 VPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVR 262
           +PLPH + E+  I+VNAKQY  I+RRR+ RAKLEAQNK+I+ RKPYLHESRH HA+ RVR
Sbjct: 184 MPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVR 242

Query: 263 GSGGRFLSANKDQPPDHITPPP 267
           GSGGRFL+  K Q  +    PP
Sbjct: 244 GSGGRFLNTKKHQESNSSLSPP 242

[Close]

BLAST of Carg18640 vs. ExPASy Swiss-Prot
Match: Q9LNP6 (Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana OX=3702 GN=NFYA8 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-23
Identity = 100/299 (33.44%), Postives = 142/299 (47.49%), Query Frame = 0


Query: 20  HLLFPYTVDSMPWRNSNEQKIQMALSDNITLK-NETPPQPHHEQSGLRLRDQESSTAYSM 79
           H   PY   S+ W    +      ++++++LK  +  P+       +  +DQ+SS+  S 
Sbjct: 13  HSTPPYLSTSISWGLPTKSN---GVTESLSLKVVDARPERLINTKNISFQDQDSSSTLSS 72

Query: 80  GQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVILFSNPEYMFNPPQVDSSH 139
            QS + V +    N   Q IS  +  D   G   E Q K   + S           D   
Sbjct: 73  AQSSNDVTSSGDDNPSRQ-ISFLAHSDVCKGFE-ETQRKRFAIKSGSS---TAGIADIHS 132

Query: 140 LMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPARVPLPHGLAEDGLIY 199
             ++  + + Y DP +GGL  +AY   A+    Q+          RVPLP  L E+  ++
Sbjct: 133 SPSKANFSFHYADPHFGGLMPAAYLPQATIWNPQM---------TRVPLPFDLIENEPVF 192

Query: 200 VNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVRGSGGRFLSANKDQP 259
           VNAKQ+H I+RRR+ RAKLEAQNK+I+ RKPYLHESRH HA+ R RGSGGRFL+  K Q 
Sbjct: 193 VNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQ- 252

Query: 260 PDHITPPPTDWCQQKDTPDFNTCS------SETGDPGTMTATCSETTSISSGSVMFGRT 312
               T P  D   Q+     N           + D    T + S+ TS S    +FG +
Sbjct: 253 --ESTDPKQDMPIQQQHATGNMSRFVLYQLQNSNDCDCSTTSRSDITSASDSVNLFGHS 291

[Close]

BLAST of Carg18640 vs. ExPASy Swiss-Prot
Match: Q84JP1 (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NFYA7 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.7e-23
Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 144 PYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPARVPLPHGLAEDGLIYVNAKQ 203
           P  YPY DP Y  +F              V+  ++G     VPLP    E+  ++VNAKQ
Sbjct: 55  PGQYPYPDPYYRSIFAP-----PPQPYTGVHLQLMGVQQQGVPLPSDAVEEP-VFVNAKQ 114

Query: 204 YHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVRGSGGRFLSANKD 257
           YHGI+RRR+SRA+LE+QNKVI++RKPYLHESRH HA+ R RG GGRFL+A K+
Sbjct: 115 YHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKE 161

[Close]

BLAST of Carg18640 vs. ExPASy TrEMBL
Match: A0A6J1FHV4 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111444277 PE=3 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 4.2e-184
Identity = 326/331 (98.49%), Postives = 327/331 (98.79%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETP QPHH
Sbjct: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPLQPHH 60

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI
Sbjct: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180
           LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS
Sbjct: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180

Query: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240
           TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV
Sbjct: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240

Query: 241 NRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS 300
           NRVRGSGGRFLSA KDQPPDHITPPPTDWCQQKDTPDFNTCSSETGD GTMTATCSETTS
Sbjct: 241 NRVRGSGGRFLSAKKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDHGTMTATCSETTS 300

Query: 301 ISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 332
           ISSGSVMFGRTWSDS+FSAVSS GGFVHDGA
Sbjct: 301 ISSGSVMFGRTWSDSRFSAVSSSGGFVHDGA 331

[Close]

BLAST of Carg18640 vs. ExPASy TrEMBL
Match: A0A6J1HNZ0 (Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC111465401 PE=3 SV=1)

HSP 1 Score: 652.9 bits (1683), Expect = 7.1e-184
Identity = 324/331 (97.89%), Postives = 328/331 (99.09%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNET PQPHH
Sbjct: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETLPQPHH 60

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI
Sbjct: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180
           LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFC+AYGQMASNT+AQVNSNVVGS
Sbjct: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCNAYGQMASNTQAQVNSNVVGS 180

Query: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240
           TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV
Sbjct: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240

Query: 241 NRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS 300
           NRVRGSGGRFLSA KDQPP+HITPPPTDWCQ+KDTPDFNTCSSETGDPGTMTATCSETTS
Sbjct: 241 NRVRGSGGRFLSAKKDQPPNHITPPPTDWCQRKDTPDFNTCSSETGDPGTMTATCSETTS 300

Query: 301 ISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 332
           ISSGSVMFGRTWSDSQFSAVSS GGFVHDGA
Sbjct: 301 ISSGSVMFGRTWSDSQFSAVSSSGGFVHDGA 331

[Close]

BLAST of Carg18640 vs. ExPASy TrEMBL
Match: A0A6J1FD18 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111444277 PE=3 SV=1)

HSP 1 Score: 647.1 bits (1668), Expect = 3.9e-182
Identity = 326/337 (96.74%), Postives = 327/337 (97.03%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETP QPHH
Sbjct: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPLQPHH 60

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI
Sbjct: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASN------TEAQVN 180
           LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASN      TEAQVN
Sbjct: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNLHDSDQTEAQVN 180

Query: 181 SNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHES 240
           SNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHES
Sbjct: 181 SNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHES 240

Query: 241 RHRHAVNRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTAT 300
           RHRHAVNRVRGSGGRFLSA KDQPPDHITPPPTDWCQQKDTPDFNTCSSETGD GTMTAT
Sbjct: 241 RHRHAVNRVRGSGGRFLSAKKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDHGTMTAT 300

Query: 301 CSETTSISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 332
           CSETTSISSGSVMFGRTWSDS+FSAVSS GGFVHDGA
Sbjct: 301 CSETTSISSGSVMFGRTWSDSRFSAVSSSGGFVHDGA 337

[Close]

BLAST of Carg18640 vs. ExPASy TrEMBL
Match: A0A6J1HKJ5 (Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC111465401 PE=3 SV=1)

HSP 1 Score: 646.4 bits (1666), Expect = 6.7e-182
Identity = 324/337 (96.14%), Postives = 328/337 (97.33%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNET PQPHH
Sbjct: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETLPQPHH 60

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI
Sbjct: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASN------TEAQVN 180
           LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFC+AYGQMASN      T+AQVN
Sbjct: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCNAYGQMASNLHDSDQTQAQVN 180

Query: 181 SNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHES 240
           SNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHES
Sbjct: 181 SNVVGSTPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHES 240

Query: 241 RHRHAVNRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTAT 300
           RHRHAVNRVRGSGGRFLSA KDQPP+HITPPPTDWCQ+KDTPDFNTCSSETGDPGTMTAT
Sbjct: 241 RHRHAVNRVRGSGGRFLSAKKDQPPNHITPPPTDWCQRKDTPDFNTCSSETGDPGTMTAT 300

Query: 301 CSETTSISSGSVMFGRTWSDSQFSAVSSRGGFVHDGA 332
           CSETTSISSGSVMFGRTWSDSQFSAVSS GGFVHDGA
Sbjct: 301 CSETTSISSGSVMFGRTWSDSQFSAVSSSGGFVHDGA 337

[Close]

BLAST of Carg18640 vs. ExPASy TrEMBL
Match: A0A6J1KA88 (Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC111493659 PE=3 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 1.6e-119
Identity = 235/325 (72.31%), Postives = 264/325 (81.23%), Query Frame = 0


Query: 1   MMAIPRENFAQKNLDQNSVHLLFPYTVDSMPWRNSNEQKIQMALSDNITLKNETPPQPHH 60
           MMAIP +NF+QKNLDQ+SVH +FP++VD  PWRNSNE+KI + LSDN TLK ETPPQ HH
Sbjct: 3   MMAIPLKNFSQKNLDQDSVHSVFPFSVDCTPWRNSNERKIPLPLSDNTTLKLETPPQHHH 62

Query: 61  EQSGLRLRDQESSTAYSMGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVI 120
           +  G +L DQESSTA+S+GQSLHKV  MEVQNAQEQCISSESG +EN GESVENQMKPVI
Sbjct: 63  KHLGFQLPDQESSTAHSIGQSLHKVCTMEVQNAQEQCISSESGQEENCGESVENQMKPVI 122

Query: 121 LFSNPEYMFNPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGS 180
           LFSNPE+MF+ PQVD S  M RV   YPY+DP YGGL CSAY Q A N +AQVN+NVVG 
Sbjct: 123 LFSNPEFMFSTPQVDGSQPMTRV--SYPYIDPYYGGLLCSAYTQQAINNQAQVNTNVVGM 182

Query: 181 TPARVPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAV 240
            PARVP+PH LAEDG IYVNAKQYHGI+RRR+SRAKLE+QN+VIRNRKPYLHESRH HA+
Sbjct: 183 APARVPIPHALAEDGPIYVNAKQYHGILRRRQSRAKLESQNRVIRNRKPYLHESRHLHAL 242

Query: 241 NRVRGSGGRFLSANKDQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSETTS 300
           NRVRGSGGRFLS+ K+Q P   T P T   QQ +TPDFNTCSSET D G      SE TS
Sbjct: 243 NRVRGSGGRFLSSKKNQSPVQST-PSTTLSQQMNTPDFNTCSSETSDRG----MSSEITS 302

Query: 301 ISSGSVMFGRTWSDSQFSAVSSRGG 326
           IS+GSV FGR  SDSQ SA+SSR G
Sbjct: 303 ISNGSVRFGR--SDSQLSALSSRMG 318

[Close]

BLAST of Carg18640 vs. TAIR 10
Match: AT1G72830.1 (nuclear factor Y, subunit A3 )

HSP 1 Score: 136.3 bits (342), Expect = 4.3e-32
Identity = 108/331 (32.63%), Postives = 158/331 (47.73%), Query Frame = 0


Query: 13  NLDQNSVHLLFPYTVDSMPWRNSNEQKI--QMALSDNITLKNETPPQPHHEQSGLRLRDQ 72
           N   ++ H   PY   S+ W       +  +   +++++LK ++ P        +  +DQ
Sbjct: 7   NKKDSATHSTLPYLNTSISWGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQISFQDQ 66

Query: 73  ESSTAYSMGQSLHKVRAMEVQNAQEQ-CISSESGLDENYGESVENQMKPVILFSNPEYMF 132
           +SS+  S GQS  +V +    N   Q   S++SG +    +   +  K   +   P   F
Sbjct: 67  DSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTGFPNIHF 126

Query: 133 NPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPARVPLPH 192
            P Q +         + + Y DP YGGL  + Y   A       N  +V   P RVPLP 
Sbjct: 127 APAQAN---------FSFHYADPHYGGLLAATYLPQAPT----CNPQMVSMIPGRVPLPA 186

Query: 193 GLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVRGSGGR 252
            L E   ++VNAKQYH I+RRR+ RAKLEAQNK+IR RKPYLHESRH HA+ R RGSGGR
Sbjct: 187 ELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGR 246

Query: 253 FLSANK-----------DQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSET 312
           FL+  K           +Q  D +        ++ +   F     +     + T + S+ 
Sbjct: 247 FLNTKKLLQESEQAAAREQEQDKLGQQVN---RKTNMSRFEAHMLQNNKDRSSTTSGSDI 306

Query: 313 TSISSGSVMFGRT-WSDSQFSAVSSRGGFVH 329
           TS+S G+ +FG T +  S F    +R   VH
Sbjct: 307 TSVSDGADIFGHTEFQFSGFPTPINRAMLVH 321

[Close]

BLAST of Carg18640 vs. TAIR 10
Match: AT1G72830.2 (nuclear factor Y, subunit A3 )

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-30
Identity = 108/332 (32.53%), Postives = 158/332 (47.59%), Query Frame = 0


Query: 13  NLDQNSVHLLFPYTVDSMPWRNSNEQKI--QMALSDNITLKNETPPQPHHEQSGLRLRDQ 72
           N   ++ H   PY   S+ W       +  +   +++++LK ++ P        +  +DQ
Sbjct: 7   NKKDSATHSTLPYLNTSISWGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQISFQDQ 66

Query: 73  ESSTAYSMGQSLHKVRAMEVQNAQEQ-CISSESGLDENYGESVENQMKPVILFSNPEYMF 132
           +SS+  S GQS  +V +    N   Q   S++SG +    +   +  K   +   P   F
Sbjct: 67  DSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTGFPNIHF 126

Query: 133 NPPQVDSSHLMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPARVPLPH 192
            P Q +         + + Y DP YGGL  + Y   A       N  +V   P RVPLP 
Sbjct: 127 APAQAN---------FSFHYADPHYGGLLAATYLPQAPT----CNPQMVSMIPGRVPLPA 186

Query: 193 GLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRK-PYLHESRHRHAVNRVRGSGG 252
            L E   ++VNAKQYH I+RRR+ RAKLEAQNK+IR RK PYLHESRH HA+ R RGSGG
Sbjct: 187 ELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGG 246

Query: 253 RFLSANK-----------DQPPDHITPPPTDWCQQKDTPDFNTCSSETGDPGTMTATCSE 312
           RFL+  K           +Q  D +        ++ +   F     +     + T + S+
Sbjct: 247 RFLNTKKLLQESEQAAAREQEQDKLGQQVN---RKTNMSRFEAHMLQNNKDRSSTTSGSD 306

Query: 313 TTSISSGSVMFGRT-WSDSQFSAVSSRGGFVH 329
            TS+S G+ +FG T +  S F    +R   VH
Sbjct: 307 ITSVSDGADIFGHTEFQFSGFPTPINRAMLVH 322

[Close]

BLAST of Carg18640 vs. TAIR 10
Match: AT1G54160.1 (nuclear factor Y, subunit A5 )

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-28
Identity = 88/235 (37.45%), Postives = 129/235 (54.89%), Query Frame = 0


Query: 28  DSMPWRNSNEQKIQ-MALSDNITLKNETPPQPHHEQSGLRLRDQESSTAYSMGQSLHKVR 87
           +SMP  NSN Q  +  +L+ ++ +     P   H  SGL+L++Q+S+++ S  +      
Sbjct: 14  NSMPTTNSNIQGSESFSLTKDMIMSTTQLPAMKH--SGLQLQNQDSTSSQSTEEESGGGE 73

Query: 88  AMEVQNAQEQCIS----SESGLDENYGESVENQMKPVILFSNPEYMFNPPQVDSSHLMAR 147
                  +    S    + SG  EN G+ +EN  K +   S    M +   V  +    +
Sbjct: 74  VASFGEYKRYGCSIVNNNLSGYIENLGKPIENYTKSITTSS----MVSQDSVFPAPTSGQ 133

Query: 148 VPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPARVPLPHGLAEDGLIYVNAK 207
           + +     + S+   F +   + AS   A  +  ++G   +RVPLPH + E+  I+VNAK
Sbjct: 134 ISWSLQCAETSHFNGFLAP--EYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAK 193

Query: 208 QYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVRGSGGRFLSANKDQ 258
           QYH I+RRRK RAKLEAQNK+I+ RKPYLHESRH HA+ R RGSGGRFL+  K Q
Sbjct: 194 QYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQ 240

[Close]

BLAST of Carg18640 vs. TAIR 10
Match: AT3G14020.1 (nuclear factor Y, subunit A6 )

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-26
Identity = 87/262 (33.21%), Postives = 126/262 (48.09%), Query Frame = 0


Query: 23  FPYTVDSMP-----WRNSNEQKIQMALSDNITLKNETPPQPHHEQSGLRLRDQESSTAYS 82
           F  + DS+P     W NS      +  S ++T  N        +Q+G +++  +SS+  S
Sbjct: 4   FHSSKDSLPCPATSWDNSVFTNSNVQGSSSLTDNNTLSLTMEMKQTGFQMQHYDSSSTQS 63

Query: 83  MGQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVILFSNPEYMFNPPQVDSS 142
            G   +              ++S S     YG +       +++     Y  NP     S
Sbjct: 64  TGGESYSE------------VASLSEPTNRYGHN-------IVVTHLSGYKENPENPIGS 123

Query: 143 HLMARV------------PYP-YPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPAR 202
           H +++V             +P +  V P + G     Y    +    Q+     G  P+R
Sbjct: 124 HSISKVSQDSVVLPIEAASWPLHGNVTPHFNGFLSFPYASQHTVQHPQIR----GLVPSR 183

Query: 203 VPLPHGLAEDGLIYVNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVR 262
           +PLPH + E+  I+VNAKQY  I+RRR+ RAKLEAQNK+I+ RKPYLHESRH HA+ RVR
Sbjct: 184 MPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVR 242

Query: 263 GSGGRFLSANKDQPPDHITPPP 267
           GSGGRFL+  K Q  +    PP
Sbjct: 244 GSGGRFLNTKKHQESNSSLSPP 242

[Close]

BLAST of Carg18640 vs. TAIR 10
Match: AT1G17590.1 (nuclear factor Y, subunit A8 )

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-24
Identity = 100/299 (33.44%), Postives = 142/299 (47.49%), Query Frame = 0


Query: 20  HLLFPYTVDSMPWRNSNEQKIQMALSDNITLK-NETPPQPHHEQSGLRLRDQESSTAYSM 79
           H   PY   S+ W    +      ++++++LK  +  P+       +  +DQ+SS+  S 
Sbjct: 13  HSTPPYLSTSISWGLPTKSN---GVTESLSLKVVDARPERLINTKNISFQDQDSSSTLSS 72

Query: 80  GQSLHKVRAMEVQNAQEQCISSESGLDENYGESVENQMKPVILFSNPEYMFNPPQVDSSH 139
            QS + V +    N   Q IS  +  D   G   E Q K   + S           D   
Sbjct: 73  AQSSNDVTSSGDDNPSRQ-ISFLAHSDVCKGFE-ETQRKRFAIKSGSS---TAGIADIHS 132

Query: 140 LMARVPYPYPYVDPSYGGLFCSAYGQMASNTEAQVNSNVVGSTPARVPLPHGLAEDGLIY 199
             ++  + + Y DP +GGL  +AY   A+    Q+          RVPLP  L E+  ++
Sbjct: 133 SPSKANFSFHYADPHFGGLMPAAYLPQATIWNPQM---------TRVPLPFDLIENEPVF 192

Query: 200 VNAKQYHGIIRRRKSRAKLEAQNKVIRNRKPYLHESRHRHAVNRVRGSGGRFLSANKDQP 259
           VNAKQ+H I+RRR+ RAKLEAQNK+I+ RKPYLHESRH HA+ R RGSGGRFL+  K Q 
Sbjct: 193 VNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQ- 252

Query: 260 PDHITPPPTDWCQQKDTPDFNTCS------SETGDPGTMTATCSETTSISSGSVMFGRT 312
               T P  D   Q+     N           + D    T + S+ TS S    +FG +
Sbjct: 253 --ESTDPKQDMPIQQQHATGNMSRFVLYQLQNSNDCDCSTTSRSDITSASDSVNLFGHS 291

The following BLAST results are available for this feature:

BLAST of Carg18640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021347.1	7.6e-188	100.00	Nuclear transcription factor Y subunit A-3 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022938088.1	8.7e-184	98.49	nuclear transcription factor Y subunit A-3-like isoform X2 [Cucurbita moschata]	[more]
XP_022965525.1	1.5e-183	97.89	nuclear transcription factor Y subunit A-3-like isoform X2 [Cucurbita maxima]	[more]
XP_023537396.1	4.3e-183	98.49	nuclear transcription factor Y subunit A-3-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_022938084.1	8.1e-182	96.74	nuclear transcription factor Y subunit A-3-like isoform X1 [Cucurbita moschata] ...	[more]

BLAST of Carg18640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZH2	6.1e-31	32.63	Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SYH4	2.4e-27	37.45	Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9LVJ7	2.9e-25	33.21	Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9LNP6	2.1e-23	33.44	Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q84JP1	4.7e-23	52.21	Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Carg18640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHV4	4.2e-184	98.49	Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1HNZ0	7.1e-184	97.89	Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC1114654...	[more]
A0A6J1FD18	3.9e-182	96.74	Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1HKJ5	6.7e-182	96.14	Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC1114654...	[more]
A0A6J1KA88	1.6e-119	72.31	Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC1114936...	[more]

BLAST of Carg18640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72830.1	4.3e-32	32.63	nuclear factor Y, subunit A3	[more]
AT1G72830.2	1.1e-30	32.53	nuclear factor Y, subunit A3	[more]
AT1G54160.1	1.7e-28	37.45	nuclear factor Y, subunit A5	[more]
AT3G14020.1	2.1e-26	33.21	nuclear factor Y, subunit A6	[more]
AT1G17590.1	1.5e-24	33.44	nuclear factor Y, subunit A8	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001289	Nuclear transcription factor Y subunit A	PRINTS	PR00616	CCAATSUBUNTB	coord: 227..250 score: 76.62 coord: 196..218 score: 69.32
IPR001289	Nuclear transcription factor Y subunit A	SMART	SM00521	cbf3	coord: 192..253 e-value: 6.6E-33 score: 125.3
IPR001289	Nuclear transcription factor Y subunit A	PFAM	PF02045	CBFB_NFYA	coord: 197..250 e-value: 3.2E-25 score: 88.5
IPR001289	Nuclear transcription factor Y subunit A	PANTHER	PTHR12632	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	coord: 26..321
IPR001289	Nuclear transcription factor Y subunit A	PROSITE	PS51152	NFYA_HAP2_2	coord: 193..253 score: 34.441677
None	No IPR available	GENE3D	6.10.250.2430		coord: 194..254 e-value: 5.6E-29 score: 102.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..273
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..70
None	No IPR available	PANTHER	PTHR12632:SF53	CCAAT-BINDING TRANSCRIPTION FACTOR	coord: 26..321
IPR018362	CCAAT-binding factor, conserved site	PROSITE	PS00686	NFYA_HAP2_1	coord: 198..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18640-RA	Carg18640-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity