Carg18638 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18638
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Photosystem II PsbX
Location	Carg_Chr12: 11925010 .. 11925381 (-)
RNA-Seq Expression	Carg18638
Synteny	Carg18638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGTGAGGAGCACCGAGGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAATTGCTGCATCAAAATCCAGCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAATTGCTGGATTGGCTGCAACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCAGGAGCTGGAGTTACCCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCTATCTTGGGTGCAATTATCGGTGTCTCCAATTTCGACCCCGTAAAGCGGACCTGA

mRNA sequence

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGTGAGGAGCACCGAGGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAATTGCTGCATCAAAATCCAGCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAATTGCTGGATTGGCTGCAACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCAGGAGCTGGAGTTACCCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCTATCTTGGGTGCAATTATCGGTGTCTCCAATTTCGACCCCGTAAAGCGGACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGTGAGGAGCACCGAGGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAATTGCTGCATCAAAATCCAGCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAATTGCTGGATTGGCTGCAACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCAGGAGCTGGAGTTACCCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCTATCTTGGGTGCAATTATCGGTGTCTCCAATTTCGACCCCGTAAAGCGGACCTGA

Protein sequence

MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPVKRT

Homology

[Close]

BLAST of Carg18638 vs. NCBI nr
Match: KAG6586487.1 (Protein Brevis radix-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.5 bits (537), Expect = 4.2e-51
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA
Sbjct: 392 MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 451

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 452 IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 511

Query: 121 KRT 124
           KRT
Sbjct: 512 KRT 514

[Close]

BLAST of Carg18638 vs. NCBI nr
Match: XP_023537653.1 (uncharacterized protein LOC111798628 [Cucurbita pepo subsp. pepo] >KAG7021345.1 hypothetical protein SDJN02_18034, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.5 bits (537), Expect = 4.2e-51
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 123

[Close]

BLAST of Carg18638 vs. NCBI nr
Match: XP_022938093.1 (uncharacterized protein LOC111444282 [Cucurbita moschata])

HSP 1 Score: 210.3 bits (534), Expect = 9.4e-51
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRAS+KEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASVKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 123

[Close]

BLAST of Carg18638 vs. NCBI nr
Match: XP_022965530.1 (uncharacterized protein LOC111465405 [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQV+ASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVQASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 123

[Close]

BLAST of Carg18638 vs. NCBI nr
Match: XP_022946746.1 (uncharacterized protein LOC111450721 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-45
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKR RST+AFAKALPLRPSNKP  AS +S AKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKP-TASSNSRAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           +AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Carg18638 vs. ExPASy TrEMBL
Match: A0A6J1FHW0 (uncharacterized protein LOC111444282 OS=Cucurbita moschata OX=3662 GN=LOC111444282 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.6e-51
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRAS+KEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASVKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 123

[Close]

BLAST of Carg18638 vs. ExPASy TrEMBL
Match: A0A6J1HNZ4 (uncharacterized protein LOC111465405 OS=Cucurbita maxima OX=3661 GN=LOC111465405 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.9e-51
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQV+ASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVQASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 123

[Close]

BLAST of Carg18638 vs. ExPASy TrEMBL
Match: A0A6J1G4H3 (uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC111450721 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKR RST+AFAKALPLRPSNKP  AS +S AKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKP-TASSNSRAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           +AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Carg18638 vs. ExPASy TrEMBL
Match: A0A6J1KCH8 (uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.9e-45
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSAVSMAMPITNATQKR RST+AFAKALPLRPSNKP  AS +S AKFQVRASLKEKA
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKP-TASSNSRAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           +AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAGGVVV AILGAIIGVSNFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Carg18638 vs. ExPASy TrEMBL
Match: A0A0A0LIL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 7.0e-44
Identity = 108/123 (87.80%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSA+SMAMPITNA QKR R  EAFAK LPLRPSNKP + S SSSAKFQVRASLKEKA
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKP-SGSSSSSAKFQVRASLKEKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           +AGLAATALTASMVLPEVAEAAG+GV+PSLKNFLLSIAAGGVVVTAILGA+IGV+NFDPV
Sbjct: 61  VAGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPV 120

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 122

[Close]

BLAST of Carg18638 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-26
Identity = 69/123 (56.10%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKA 60
           MASTSA+S+  P+ N T+     +  F K LPL+PS K + A+   + + QV+A   +KA
Sbjct: 1   MASTSAMSLVTPL-NQTR-----SSPFLKPLPLKPS-KALVATGGRAQRLQVKALKMDKA 60

Query: 61  IAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPV 120
           + G++A ALTASMV+PE+AEAAG+G++PSLKNFLLSIA+GG+V+T I+G ++GVSNFDPV
Sbjct: 61  LTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPV 116

Query: 121 KRT 124
           KRT
Sbjct: 121 KRT 116

The following BLAST results are available for this feature:

BLAST of Carg18638 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586487.1	4.2e-51	100.00	Protein Brevis radix-like 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023537653.1	4.2e-51	100.00	uncharacterized protein LOC111798628 [Cucurbita pepo subsp. pepo] >KAG7021345.1 ...	[more]
XP_022938093.1	9.4e-51	99.19	uncharacterized protein LOC111444282 [Cucurbita moschata]	[more]
XP_022965530.1	1.2e-50	99.19	uncharacterized protein LOC111465405 [Cucurbita maxima]	[more]
XP_022946746.1	2.7e-45	91.87	uncharacterized protein LOC111450721 [Cucurbita moschata]	[more]

BLAST of Carg18638 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHW0	4.6e-51	99.19	uncharacterized protein LOC111444282 OS=Cucurbita moschata OX=3662 GN=LOC1114442...	[more]
A0A6J1HNZ4	5.9e-51	99.19	uncharacterized protein LOC111465405 OS=Cucurbita maxima OX=3661 GN=LOC111465405...	[more]
A0A6J1G4H3	1.3e-45	91.87	uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A6J1KCH8	4.9e-45	91.06	uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667...	[more]
A0A0A0LIL7	7.0e-44	87.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1	[more]

BLAST of Carg18638 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	2.2e-26	56.10	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 86..123 e-value: 4.9E-18 score: 64.9
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 85..123 e-value: 4.6E-13 score: 50.7
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18638-RA	Carg18638-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0019904	protein domain specific binding