Carg18607 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18607
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr12: 11801287 .. 11803637 (-)
RNA-Seq Expression	Carg18607
Synteny	Carg18607

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACAGGAACGACGTGAAGCAGTTCGACTCATCAAGAAATGCAAGTTTATCGGATAGAAAAAACTTGGTTGTTCTTGCACGAAAAAGAATGACCTTCTCGTTTAAACTTTCAAACCAGGTACTTGAGACATACTTTCATTCGCACCTTGGGATATTTAGCTGTTATAATAAATGTGACATCAATGATTTATTCCTCTATTTGTAAAAGCTTTACACCGAGCAAATCTATTATAGGAAACTTTCATTTTTTTCCCCTTTATCCTTCGTGTTTTACCTTTATAGTTACCAAGAACAATTCCTTATATAGGGTGAACAAGAACGAACTTTAACTAGCGTTCAAACTTTCTTAATATCCTTAGATTTTAAACCGAGTAGATAGAGGTATGTTGAAGAAAGATCATTATTGTTTAAACAATACTTGAGAGGGATTTAGAAATGGTGAAAATCACGTTTAAAAGTGTAGAATCAAACACTAAATTGATTCGAGCGTGACGTATTTGAGTTAAAAGATGTCGAATATAAAGAGTAGTAGACAAACAAAGAACACCGAGATAGCGTCTTTTTTTTTTTTTTTATTGTTTTAATAAAGAAAAGAGTAAAGAAAAGAAAAGGGGTTGAGAGACAAAATGAAGAAGCATGGGCAGAAATCTGCTGGGGGAACACATCATAGTTAAGAAGCTTCATCATGATTTGCTTCTTGACTGATCAAAGGAAGTATGTCATAAACGTGAAGACTAACCATCATCTGATCAAATTGCTTTTGTGGGCCACAAGATTTCCCAAGTTTAGACCACGTCATTCCCTCTGGGCTCCACACCCTTTTTATTTCCGTCCACAGTTTTTTCTCCCTTTTCTTTTCTAAACCCTAATTAATTAATTAACTCTAATACCTCACAAACCCATCTCGAGAGAGAGAATGAAGACTTTGTTATGTGATTAATTATATTTATATGATTATTTAAACATGTAATTGAAAGGGGTGGTGGTGGTCCATCAAATATACTGCTCATTTGCCTTGCATATCAAGCAACCTCCTTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCACAGCAACATTCATGGCTAAAAGCATAATGACCAGCACCTCGGCTCGATACCCATGTGAGTTTCTCTCTCTCTCTCTTTCTCTCTCTAGCATTTCCTCATGAACAAACTTAGGCTCGAAAGTGAAACAGTCATGCAAAAAATGTAAAAAAAAAAAAAAAAAAAAAAGTACACAGAAAAAAGACAAAAACAAGAGGTGGGTGATTGTTAAATTTTTTTTTCTCTAGGATCTGAGTTTGTACTCAAAGATTTTGCCACGTTCAAGGCTTCTTATCACTTCAAGTTGGTAGTCGGTTGTTTTATCTTCATCTCCAAAACCTATTATTTCTACCCTCTCAACCTAACCTAACTGTGAGATACAAATCTCAAATTTTCTTTTCTAATCAAAGATATATGCGTTAACGAGTTGAGTTATGTTCAAATTGGATAAGGAAAAAAGAGAGAGTAAGTGGGTTGTGTGTGAAAATGGAGAAGTGGGTGTGGGCTAAAACAAAACGAAAAGATAGGATGGATGGAGTGAAATATTCGAAAGCCTTAGGAATTGGGCCTAAGAGATTAACAGCTGTGAAAGAAGGCCGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGCCTTTTGCTTTTGTAGTCAAGGGTTGAAGCAAAAGAAACAAACAAGGCAGCAGACAGAGATCAGCTCCTTGAGCCTTTACAAATCTCTCTCTCTCTCTCTCTCTTTCTTTTCCCACAAACCGCCTACATATGATATCATTTGATATTATGATATCATTTTGTTCTAAATTTCCCCAAACCCTTAAAGCTTCTGTGTAGGTTTTGAGGCTCACCTTTTTCTTTTCCCTTCTCTCTCTCTCTCTCTCTCTGTTCAGTTAAAGTTAAGAGCAAATTCTGGTTTGCTTCTCTACTTCTTCTTTCTCTTGTTAAAGCAAACCTTATAGCTCTCTCCAAACCCAAATCCACAGTTTCTTCTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTAGGGTAAGTAAGTAAGTAAGTATATAGCTTTTATCTTCTCTTCTCTGTGGGTTTCAACAAAATTGAAGCTTTCCCTTCATCCTCTTTCTATTTTGAACAAAACCCAGTTCTTAGATTTCAAATTCAATCACTGGGGTTTCAAAAAGTTACCTCCTTTTTGTTTACAGTGATGAGAATTCACAATACCAAGTTGATATCAAGCTTGAAAGATAGAAGAAGAAGAAGAAGAAGGAGCTTCTAAAACGACGGCGTACAAAGAAGAATATCAAAGGGACGTT

mRNA sequence

ATTACAGGAACGACGTGAAGCAGTTCGACTCATCAAGAAATGCAAGTTTATCGGATAGAAAAAACTTGGTTGTTCTTGCACGAAAAAGAATGACCTTCTCGTTTAAACTTTCAAACCAGATAGAAGAAGAAGAAGAAGAAGGAGCTTCTAAAACGACGGCGTACAAAGAAGAATATCAAAGGGACGTT

Coding sequence (CDS)

ATGACCTTCTCGTTTAAACTTTCAAACCAGATAGAAGAAGAAGAAGAAGAAGGAGCTTCTAAAACGACGGCGTACAAAGAAGAATATCAAAGGGACGTT

Protein sequence

MTFSFKLSNQIEEEEEEGASKTTAYKEEYQRDV

Homology

[Close]

BLAST of Carg18607 vs. NCBI nr
Match: KAG7021315.1 (hypothetical protein SDJN02_18004, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-07
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1  MTFSFKLSNQIEEEEEEGASKTTAYKEEYQRDV 34
          MTFSFKLSNQIEEEEEEGASKTTAYKEEYQRDV
Sbjct: 1  MTFSFKLSNQIEEEEEEGASKTTAYKEEYQRDV 33

The following BLAST results are available for this feature:

BLAST of Carg18607 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021315.1	3.8e-07	100.00	hypothetical protein SDJN02_18004, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg18607 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18607 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18607 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18607-RA	Carg18607-RA	mRNA