Carg18598 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18598
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 11752982 .. 11755177 (-)
RNA-Seq ExpressionCarg18598
SyntenyCarg18598
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAACCCGTGATCATCTAATTAAGCCGAAGCCGGATTTGAGCAGTGAATCGTATATTTATGTAATTTTCATTTTTCTTTCCCTCTTTCGAAACCCTTAATTTTCTCTTCTTCTTCATTCATTCTTTAATTCCTTTTTGTTTTATTTTTACACATAATTTTATTTGGTTTTTGTTGGATTTTAATGAGTAGTTTTGGTTTCAGGTTCAAAAGGCTCTGTACAGTGTAAAGGAGAATTTGTGTTTAATATATATATATATTTTTTCTTACTTTGTTATGTGATAAGATATGAATATTGATTTATTGCTTTTTTTTTATTTGTTCTTTTTAAGATAAAACTTGTGGGTTTCACTTTAATGGGTAGCTAGATCCGCTACCCGATCATGACTTTCCTACCCTTAGAGGAAAAAATCCTCTTTTTTGCCGGTTGTGGGCAAAGAGGGATTCGAACCCCCAACACTGTGGTTCGTAGCCACGTGCTTTAATCCTCTGAGCTACAAATCTCACCCCGTCTCCACTGGATCTGTTCTTGAGGTACCCTAAGGAACCTTTCCTCTCCTCAGCCATTTGCCATTTCGATGTGAAAGTTCCTCCCTCGATAAGAATGGTGTGTTCCAAGGTGTGAAGTGAAAAAGAAAAGTGGGAGAGAAGGAGTTGGCTGTTTTTTTTTTTTTTTTTTTTTTGTAGGACCTCCCCTACGGTATCGTCACCACAGTAGAGTTTAACCGCTGAGTTTGGGATGGATTAGTGTGGTTCCTCTATGCTTAGGACACCAAAATATTGAACCATGAACTAAGAACGGCATAGGAGAAAAACATATTGGCTAGTAATTGTGAGGTCCCAATTCTTGACCCGAGGGAACACTAAAGACCTTTGCCCTACCATCCCATGGATAGATGAATCCCATGGATAGATGAATGGATAGATGAATCCCATGGATAGATGAATGCAAGACGATGAATGCAAGACGAAAACTAACTTGAATAGATTTTCAATGAGAAGTAGGGTGCACAAACTTTACAAATATGCTCAACATTGTACTGCTGAATCCATGGTGTGAATCAGGATGTTTGGTATCTTCCAACAGCCATGGCGCAGACCCTAAAATGCATTAGAATACCAGATTCCCTGTTACAGAAAAGCCAGAAAATAGATTCATGAAGCCAAGTACCAGAACACTGAGACGCGAACTCGACAAACACCGACAACGCCCAGCCGAAGAACAAGCAAATTATAACATCGGAGACTGGAAACAACAGCAACTGCCAACCATAAAACCAGAAAATGATGCCAAAAACTCTTATATGCTGAGCATGAACATAAACACAAGCCATAAGAACTTGAGAAAAAATGCCCTCAACTTCTAAATCATTCATACACAATGACCACCCAAAAAGGGAGCAACCTGAAATGAAGCCTTTACATATGAAAACTACAATGAACACCAAAAGATTCTGCACTTGAATGACTAATTCATGCGCATTGAACAGACCGATTATCATAAAAGATCATGAAGAACAGCTCAACCAAAAGAAAACGAATCTATACCATCAAATGAGTGAAGAAATCTAAGGGAAACAAAAATTCAAGTAAAAAACTTAAGAACTCAATGGATATTGTAATAGCAACACATGCAATCCTTTCATCTATAACCTGAGCTAATTGTACAATTCAGCGTAGTGTGAAAGATTATTAGATAAATTCGTAACAATGTCAGCATTGCACACAATAATCAATAATTTGAAGTAATCTATAACACATGCCTTCTTATCTCAAAATCTCAGCTTAATTCAAGCCTGTTTTATTTGTACTCAAAATTTGGCACAGGCGGTGCATCAAAGCTTTCCAAAATCGTTGTCTCACTTCCTCCACTCGACACTGCAGATTCCTTCTTCTTGCCTCCACCAAACCAACCTCCAAACCACGAATCACTACCAGAATCTGAAGAAGACGAAGAAGAAAGGCTTGTCAACTCCGCTTGCGGTAGAGACAGGGGAGGAGCACGGCCAGGTAATTGGCCTGTAGGATATCCAGGTACACTAGCCATACCAGCAGGCTCCTCCGTGACAACAGGCATATTCTGTTGCTGGCTGAGGACTTTATTGAGCATAATCCCAGCTCCTTCAATCAACGCTAACAAAACGCCGCCAAAAACAGCAGAACGAGCTGCTGATGCAGGTCCCTGTCGCATCTGA

mRNA sequence

ATGATAACCCGTGATCATCTAATTAAGCCGAAGCCGGATTTGAGCAGTGAATCGTATATTTATGACCTCCCCTACGGCGGTGCATCAAAGCTTTCCAAAATCGTTGTCTCACTTCCTCCACTCGACACTGCAGATTCCTTCTTCTTGCCTCCACCAAACCAACCTCCAAACCACGAATCACTACCAGAATCTGAAGAAGACGAAGAAGAAAGGCTTGTCAACTCCGCTTGCGGTAGAGACAGGGGAGGAGCACGGCCAGGTAATTGGCCTGTAGGATATCCAGGTACACTAGCCATACCAGCAGGCTCCTCCGTGACAACAGGCATATTCTGTTGCTGGCTGAGGACTTTATTGAGCATAATCCCAGCTCCTTCAATCAACGCTAACAAAACGCCGCCAAAAACAGCAGAACGAGCTGCTGATGCAGGTCCCTGTCGCATCTGA

Coding sequence (CDS)

ATGATAACCCGTGATCATCTAATTAAGCCGAAGCCGGATTTGAGCAGTGAATCGTATATTTATGACCTCCCCTACGGCGGTGCATCAAAGCTTTCCAAAATCGTTGTCTCACTTCCTCCACTCGACACTGCAGATTCCTTCTTCTTGCCTCCACCAAACCAACCTCCAAACCACGAATCACTACCAGAATCTGAAGAAGACGAAGAAGAAAGGCTTGTCAACTCCGCTTGCGGTAGAGACAGGGGAGGAGCACGGCCAGGTAATTGGCCTGTAGGATATCCAGGTACACTAGCCATACCAGCAGGCTCCTCCGTGACAACAGGCATATTCTGTTGCTGGCTGAGGACTTTATTGAGCATAATCCCAGCTCCTTCAATCAACGCTAACAAAACGCCGCCAAAAACAGCAGAACGAGCTGCTGATGCAGGTCCCTGTCGCATCTGA

Protein sequence

MITRDHLIKPKPDLSSESYIYDLPYGGASKLSKIVVSLPPLDTADSFFLPPPNQPPNHESLPESEEDEEERLVNSACGRDRGGARPGNWPVGYPGTLAIPAGSSVTTGIFCCWLRTLLSIIPAPSINANKTPPKTAERAADAGPCRI
Homology
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BLAST of Carg18598 vs. NCBI nr
Match: KAG7021306.1 (hypothetical protein SDJN02_17995, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.1 bits (780), Expect = 3.4e-79
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 

Query: 1   MITRDHLIKPKPDLSSESYIYDLPYGGASKLSKIVVSLPPLDTADSFFLPPPNQPPNHES 60
           MITRDHLIKPKPDLSSESYIYDLPYGGASKLSKIVVSLPPLDTADSFFLPPPNQPPNHES
Sbjct: 1   MITRDHLIKPKPDLSSESYIYDLPYGGASKLSKIVVSLPPLDTADSFFLPPPNQPPNHES 60

Query: 61  LPESEEDEEERLVNSACGRDRGGARPGNWPVGYPGTLAIPAGSSVTTGIFCCWLRTLLSI 120
           LPESEEDEEERLVNSACGRDRGGARPGNWPVGYPGTLAIPAGSSVTTGIFCCWLRTLLSI
Sbjct: 61  LPESEEDEEERLVNSACGRDRGGARPGNWPVGYPGTLAIPAGSSVTTGIFCCWLRTLLSI 120

Query: 121 IPAPSINANKTPPKTAERAADAGPCRI 148
           IPAPSINANKTPPKTAERAADAGPCRI
Sbjct: 121 IPAPSINANKTPPKTAERAADAGPCRI 147

The following BLAST results are available for this feature:
BLAST of Carg18598 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021306.13.4e-79100.00hypothetical protein SDJN02_17995, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg18598 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18598 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18598 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18598-RACarg18598-RAmRNA