Carg18591 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18591
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein phosphatase 1 regulatory subunit pprA
Location	Carg_Chr12: 11729514 .. 11730113 (-)
RNA-Seq Expression	Carg18591
Synteny	Carg18591

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATATTTGTTATGCCTTAACTCTGTTCCTTGACCTAACTTTTCAGTATTGTGTTGCTTCGGAAGGGCACTATCTAAGCCAAAATGGAGTTTCAGAACTTGAAGGCATCTCAACCTTGGTCAATCTTCCTATATTTTGAATGTTTCATTAAATAAGCTAATGAATGCTAATGACATTCAAAATCTGACATCGTTTCAAGAATTTCGTATCTCCCATCATATGTAACATGGTTATCGTTTCCAGGGTGATATCTGGTTACTTCGTTGGATCGACGTTTGTAGTCTAGAAGATTTATGCTTAAAGACAGCCAAATAGAACCACTTGAAAGCATTGCTGAGGATGTAGCTGGTTCAAGAGAGGAACCGACAACCATCTACCTCAAGAACAATCAATGTGTAAGTTTCCATACTGAATAACTTTTATGACTAGAAAATTTGCTTCTGATCTCTTGGTGCTTCACTAGTGCTAGTGTCTGGATTTCTGCATGACCCATATATTTCAGCTATAAATTCTATGGGGAAAAGTATCGATATCATTTTATAACTTTTTTTTAATTTTTAGTTTTTCGTTTTTAAAGAATAAAACTCTTTACTAA

mRNA sequence

ATGGCAAATATTTGTTATGCCTTAACTCTGTTCCTTGACCTAACTTTTCAGTATTGTGTTGCTTCGGAAGGGCACTATCTAAGCCAAAATGGAGTTTCAGAACTTGAAGGCATCTCAACCTTGTCTAGAAGATTTATGCTTAAAGACAGCCAAATAGAACCACTTGAAAGCATTGCTGAGGATGTAGCTGGTTCAAGAGAGGAACCGACAACCATCTACCTCAAGAACAATCAATGTAATAAAACTCTTTACTAA

Coding sequence (CDS)

ATGGCAAATATTTGTTATGCCTTAACTCTGTTCCTTGACCTAACTTTTCAGTATTGTGTTGCTTCGGAAGGGCACTATCTAAGCCAAAATGGAGTTTCAGAACTTGAAGGCATCTCAACCTTGTCTAGAAGATTTATGCTTAAAGACAGCCAAATAGAACCACTTGAAAGCATTGCTGAGGATGTAGCTGGTTCAAGAGAGGAACCGACAACCATCTACCTCAAGAACAATCAATGTAATAAAACTCTTTACTAA

Protein sequence

MANICYALTLFLDLTFQYCVASEGHYLSQNGVSELEGISTLSRRFMLKDSQIEPLESIAEDVAGSREEPTTIYLKNNQCNKTLY

Homology

[Close]

BLAST of Carg18591 vs. NCBI nr
Match: KAG7021300.1 (hypothetical protein SDJN02_17988, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.9 bits (429), Expect = 9.6e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MANICYALTLFLDLTFQYCVASEGHYLSQNGVSELEGISTLSRRFMLKDSQIEPLESIAE 60
          MANICYALTLFLDLTFQYCVASEGHYLSQNGVSELEGISTLSRRFMLKDSQIEPLESIAE
Sbjct: 1  MANICYALTLFLDLTFQYCVASEGHYLSQNGVSELEGISTLSRRFMLKDSQIEPLESIAE 60

Query: 61 DVAGSREEPTTIYLKNNQCNKTLY 85
          DVAGSREEPTTIYLKNNQCNKTLY
Sbjct: 61 DVAGSREEPTTIYLKNNQCNKTLY 84

[Close]

BLAST of Carg18591 vs. NCBI nr
Match: XP_038877428.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Benincasa hispida] >XP_038877429.1 protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL---------SRRFM---------------LKDSQ 75
           FQ CVA E  YLS NG+S++EG+STL         S + M               L D+Q
Sbjct: 218 FQDCVALEELYLSHNGISKIEGVSTLVNLRILDVSSNKLMSVSDIQNLTCLEDLWLNDNQ 277

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LE+IAEDVAGSRE+ TTIYL+NN C KT
Sbjct: 278 IESLETIAEDVAGSREKLTTIYLENNPCAKT 308

[Close]

BLAST of Carg18591 vs. NCBI nr
Match: XP_004139355.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucumis sativus] >KGN60590.1 hypothetical protein Csa_019357 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ CVA E  YLS NG+S++EG+STL                             L D+Q
Sbjct: 218 FEDCVALEELYLSHNGISKIEGVSTLVNLRILDVSSNKLTSVSDVQNLTCLEDLWLNDNQ 277

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LE+IAEDVAGSRE+ TTIYL+NN C KT
Sbjct: 278 IESLETIAEDVAGSREKLTTIYLENNPCAKT 308

[Close]

BLAST of Carg18591 vs. NCBI nr
Match: XP_022946403.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ C+A E  YLS NG+S++EGISTL                             L D+Q
Sbjct: 224 FEGCIALEELYLSHNGISKIEGISTLVNLRILDVSSNKLTSVSGTEKLTRLEDLWLNDNQ 283

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LESI+EDVAGSRE+ TTIYL+NN C KT
Sbjct: 284 IESLESISEDVAGSREKLTTIYLENNPCAKT 314

[Close]

BLAST of Carg18591 vs. NCBI nr
Match: XP_023547162.1 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita pepo subsp. pepo] >XP_023547163.1 protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ C+A E  YLS NG+S++EGISTL                             L D+Q
Sbjct: 224 FEGCIALEELYLSHNGISKIEGISTLVNLRILDVSSNKLTSVSGTEKLTRLEDLWLNDNQ 283

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LESI+EDVAGSRE+ TTIYL+NN C KT
Sbjct: 284 IESLESISEDVAGSREKLTTIYLENNPCAKT 314

[Close]

BLAST of Carg18591 vs. ExPASy Swiss-Prot
Match: Q84WJ9 (Protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g19680 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-09
Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ CVA E  YLS NG+S++EG+S L                             L D+Q
Sbjct: 215 FEECVALEELYLSHNGISKMEGLSALVNLRVLDVSNNKLTSVDDIQNLTKLEDLWLNDNQ 274

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LE+I E V GS+E+ TTIYL+NN C K+
Sbjct: 275 IESLEAITEAVTGSKEKLTTIYLENNPCAKS 305

[Close]

BLAST of Carg18591 vs. ExPASy TrEMBL
Match: A0A6J1KFL4 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111493850 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ C+A E  YLS NG+S++EGISTL                             L D+Q
Sbjct: 224 FEGCIALEELYLSHNGISKIEGISTLVNLRILDVSSNKLTSVSGTEKLTRLEDLWLNDNQ 283

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LESI+EDVAGSRE+ TTIYL+NN C KT
Sbjct: 284 IESLESISEDVAGSREKLTTIYLENNPCAKT 314

[Close]

BLAST of Carg18591 vs. ExPASy TrEMBL
Match: A0A0A0LEZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000970 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ CVA E  YLS NG+S++EG+STL                             L D+Q
Sbjct: 218 FEDCVALEELYLSHNGISKIEGVSTLVNLRILDVSSNKLTSVSDVQNLTCLEDLWLNDNQ 277

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LE+IAEDVAGSRE+ TTIYL+NN C KT
Sbjct: 278 IESLETIAEDVAGSREKLTTIYLENNPCAKT 308

[Close]

BLAST of Carg18591 vs. ExPASy TrEMBL
Match: A0A6J1G3P9 (protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111450470 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ C+A E  YLS NG+S++EGISTL                             L D+Q
Sbjct: 224 FEGCIALEELYLSHNGISKIEGISTLVNLRILDVSSNKLTSVSGTEKLTRLEDLWLNDNQ 283

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LESI+EDVAGSRE+ TTIYL+NN C KT
Sbjct: 284 IESLESISEDVAGSREKLTTIYLENNPCAKT 314

[Close]

BLAST of Carg18591 vs. ExPASy TrEMBL
Match: A0A1S3C7Y5 (protein phosphatase 1 regulatory subunit pprA OS=Cucumis melo OX=3656 GN=LOC103497998 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ CVA E  YLS NG+S++EG+STL                             L D+Q
Sbjct: 218 FEDCVALEELYLSHNGISKIEGVSTLVNLRILDVSSNKLTSVSDIQNLTCLEDLWLNDNQ 277

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LE+IAEDVAGSRE+ TTIYL+NN C KT
Sbjct: 278 IESLETIAEDVAGSREKLTTIYLENNPCAKT 308

[Close]

BLAST of Carg18591 vs. ExPASy TrEMBL
Match: A0A5D3CKJ2 (Protein phosphatase 1 regulatory subunit pprA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00500 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-09
Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ CVA E  YLS NG+S++EG+STL                             L D+Q
Sbjct: 218 FEDCVALEELYLSHNGISKIEGVSTLVNLRILDVSSNKLTSVSDIQNLTCLEDLWLNDNQ 277

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQC 80
           IE LE+IAEDVAGSRE+ TTIYL+NN C
Sbjct: 278 IESLETIAEDVAGSREKLTTIYLENNPC 305

[Close]

BLAST of Carg18591 vs. TAIR 10
Match: AT5G19680.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-10
Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 16  FQYCVASEGHYLSQNGVSELEGISTL------------------------SRRFMLKDSQ 75
           F+ CVA E  YLS NG+S++EG+S L                             L D+Q
Sbjct: 215 FEECVALEELYLSHNGISKMEGLSALVNLRVLDVSNNKLTSVDDIQNLTKLEDLWLNDNQ 274

Query: 76  IEPLESIAEDVAGSREEPTTIYLKNNQCNKT 83
           IE LE+I E V GS+E+ TTIYL+NN C K+
Sbjct: 275 IESLEAITEAVTGSKEKLTTIYLENNPCAKS 305

The following BLAST results are available for this feature:

BLAST of Carg18591 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021300.1	9.6e-39	100.00	hypothetical protein SDJN02_17988, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038877428.1	2.5e-10	50.55	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Benincasa his...	[more]
XP_004139355.1	2.1e-09	47.25	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucumis sativ...	[more]
XP_022946403.1	2.1e-09	47.25	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita mos...	[more]
XP_023547162.1	2.1e-09	47.25	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Cucurbita pep...	[more]

BLAST of Carg18591 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WJ9	4.8e-09	40.66	Protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Arabidopsis...	[more]

BLAST of Carg18591 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFL4	1.0e-09	47.25	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Cucurbita m...	[more]
A0A0A0LEZ4	1.0e-09	47.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000970 PE=4 SV=1	[more]
A0A6J1G3P9	1.0e-09	47.25	protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog OS=Cucurbita m...	[more]
A0A1S3C7Y5	1.0e-09	47.25	protein phosphatase 1 regulatory subunit pprA OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3CKJ2	6.6e-09	46.59	Protein phosphatase 1 regulatory subunit pprA OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Carg18591 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19680.1	3.4e-10	40.66	Leucine-rich repeat (LRR) family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18591-RA	Carg18591-RA	mRNA