Carg18562 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18562
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ribonuclease III domain-containing protein RNC1, chloroplastic
Location	Carg_Chr07: 2972439 .. 2976339 (+)
RNA-Seq Expression	Carg18562
Synteny	Carg18562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTTCTTCTTCTTTTGTTAAACTCTCATCCTCGACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAAATTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAAATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAGACGACAATCCCGCAAAACAATTCGACACTCTCTCTTATATTTGGCCTTCCAGCATCCCTCATGCGAAAGAACAAAGGCACGACACATAAGATCAGGGCACTCCAGGCTTTTGTTTTTGGGGCAATACGTGCTCGAATTGGCGTTAGCAGAGTATTTTTTACAGAGGTATCCGAGGGAGTCGCCTGGTCCAATGAGGAAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAAGTGGATTAAGGCTGCCAGTTTACAGAATTTGATATTCCCATATGATGATATGGATAAGCTGATCAGGAAGGACCGTGTATGGTATTGTCTTTTCATTGGTTCTAATGCTTCTTTTTTAATCATGCTATGAGTAAGATACTTGTAAGATATAGTGTTTTGAGCTTTAAGTGATTTGAGAGTTCTTTCATTGATGTGTTAAGCTTCATATTAAGTTTGAGAAGCATCACAAAATATGGGAAGCTGATTATGCAATATGATGATAATGCGTTGTGCATAGTTGCTGCTCCTGGAAATCCAAAGTTAGTGAATTTTGATGGTTGTGGACTTTGAGTTTCTTTATATAGATGGCAAACCCATTTAGTGAAGATAATGCTGCATAAAACCAAGAAGAGACCATGTTAAGGAGGTTCTTTGAGTCAAAACTGACAATGTGGCCTAAAGCCATAATTTAAGGTTGATAAGAACCCTAATCGTCAGCCCAACATAAGTTTTTGTTGAAGGAAAAACATAGTAATTAACACCTCCTTATATGAAATTTGTATCAAGCAAAAGATAAAAGCTAGAATTAGATTACCGAAGATTTAGAAGTAAGATTTTTAATTCTAAATTGAGTCACCCCACAATCGAACTTGATCGAGGCTTGATTGAATGACTCGGCAATTCTACGACAATAATTGTTTGAAACTTAGAAATGACAAAATTGATGCTCGGATTTCTAAGGAAAACGTCCCAATTCGAGATTCAATTTCATTCGTTTACCAATCTGATTTTTACACAACATATTGTGGGTATTTATAGTCTCCCGACTAAAGACATTTGTGGACATTTGTGGCCTGGATACAATCCTGATCCCCTTTAATCCCCATGAAAGATGAAGTCAATTTTGACCATTTGACATTTTAAAGTTTTCTAACTCCAACCGTGCAAATATTCAGAATGTTTGTTGAATCTACCAAAGAAAATGAATGTTTGTTGAATCTTCTTGGCCTTGTATCGTGTAATAGGTCAAGTTGTAACATTTGGAACACCGTGATTCTTATCAAATGTTATTTAGGTGGCGTTGTGATATGAACCAAGAGACATCATTCATACAATATATTTCAATGAAGATGTGAAGAAAATGTTGTCAAAATTATCAAAAGAGGTTGCAATTCATGCCACATTGAAAGGGAATGAAGTTTGATGGTTATAAATTTTGGGTGGGTTGATTTCCATATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAAGATCGAAACCTATGAACTCCTCCAAATTCGTTTGTCTTTCACAAACTTATTTCAGGCTAATATGGTTAATTTTTACCAGCTTGGCTTCGGCAAATCTGGCTTTGATATCACTTGTCACGGGATCACATATAAGATAAAGATTCGGCCTTGTGAAGCCTGGTATCATGGTGGGACTTGGGAGATCGGATTTTCTGTACCGACTTGTGTACTTAGTTTGCATGATTCATCGAAGTCTCATTTTTGTATGATGGAACATGTACTATTAGTTGATACAGCGAAACATGTATTGTGAGATCCTACATCGGCTGGAGAGGAGAACGTAACATTCCTTATAAGGGTGTGGAAACTCTCTCTAGTAGACGCGTTTTAAAACCTTGAGAGAAAGCCTAAAAAGGAAAGTCCGAAGAGGACAATATCTGCTAACGGTGGGCTTGAACTATTACAAATAAGTCAAATACCGGACAATGTGCTAGTGAGGACGCTGGTCCCCTAAGGGGGTGGATTGTGAGATCTCACATTGGTTGGAAAGAGAACGAAACATTCCTTATAAAAGTGTGGAAACCTCTCCCTAAACACGTTTTCAGAAGAGAAAGCCCAAAGAGGACGATATCTACTAGTGGTAGGACATGCTTTCACGTCTAATCACGAGTGAACTAACCTACTTATGATTAGTAACTTAAAATTCCCATCTTTCCTCTTTCTATTACACTGATTCAATGTATTATATCAAACAATTTGAAACTAATATTTACTTACTTCAAGCAGATCTGTAATTGTGGGCGTTGTTTGGGGCAATATATTTATGTTTCGGAATGCCAGAAGTGTATCGGGTCCTTTTCGAAGTGTTCGGAATGGATCCCGATTCAGAGGAATGTGAACCGAGATTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGATTGCAGGTAATTACACCTTATCTGTGAAGTGATAATTTGTCAATGTGTATGGTGTAGAACGTTTGCTTGATGCTTGATATAGATCAATTTAATCCTGTTTATCAAGAAAATCTCAGGCAAGTTCTTAATCAAATGCAGCTTTGCCTTTTGCACCCATCAAAATACAAGTTCGAGCATCCTCGTTTCTGCTACGAACGATTAGAATACCTCGGCCCAAAGATCCAGGTAAGATCGTTTACATGTATTAAGGAGAGATCATACTCCTTTCTCTCTATCAACATCCTGTCTACTTGTGGCGTTCAGTCGGAGCGTGTTCTTCGTTGTAGGATATGTGTATATATATATTGGGCAATGTTTTTTTTTAAAACTTGTCTCCTGCAATATTCCTTCAATCCAGTTTCTGTCTCTTCTGATGGGATGCGATTTTTTTTTTTTTTTTTTTTTTGTTCTATTTTGATTTTTTATTTAGTTTGTTTATTTGTAACTAAGAGATTTTTTAGAATATTAAAAATTATGAGTGTAACCACTCTGGCCCACCACAAGCAAATATGGCTCTATTTGGACTTTTGTTGTTGTGCTTTCTCTCAAGGCTTTAAAACGCGTTTGCTAACGGTTTCCATACCCTTATAAATGGTGATTTCTTCTCTTTCCCAACCAATGTGTGACATCACAATCCACCCATTTCAGGGCCCAGCGTCCTCACTCGCAATCTTTCCTTTTTTCGATCGATGTGGGACTGCCCCCAAATACACTCCCTTTGGGGCCTAGCATCTTTACTAGCACACCGCTTCGGTGTTTGGCTCTGATACCATTGATAACGACTCATATTTATCACTAGCAGATATTGTTCTTTTGGGCTTTTCTTTCGGGCGGCTAGGAGTAAAATACAAAAATTAAAAATTATGAATTCATACATTTTTAATTTTATATAAAAAAAAGTTAGACCCATTAAATTCGTAAAATATTGGAGTATTATTGTATATTTTTTTTAGGTTAAAAAAATTTAA

mRNA sequence

ATGGAGCTTTCTTCTTCTTTTGTTAAACTCTCATCCTCGACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAAATTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAAATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATACATCCCTCATGCGAAAGAACAAAGGCACGACACATAAGATCAGGGCACTCCAGGCTTTTGTTTTTGGGGCAATACGTGCTCGAATTGGCGTTAGCAGAAGGTATCCGAGGGAGTCGCCTGGTCCAATGAGGAAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAAGTGGATTAAGGCTGCCAGTTTACAGAATTTGATATTCCCATATGATGATATGGATAAGCTGATCAGGAAGGACCAAGTGTATCGGGTCCTTTTCGAAGTGTTCGGAATGGATCCCGATTCAGAGGAATGTGAACCGAGATTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGATTGCAGGCAAGTTCTTAATCAAATGCAGCTTTGCCTTTTGCACCCATCAAAATACAAGTTCGAGCATCCTCGTTTCTGCTACGAACGATTAGAATACCTCGGCCCAAAGATCCAGGTTAAAAAAATTTAA

Coding sequence (CDS)

ATGGAGCTTTCTTCTTCTTTTGTTAAACTCTCATCCTCGACTAATTACTCTTTCTCGTCTTCTTTTACTCCATTTATTGTAAAAATTCACCCCAATAGTCCCAATTTCCCGAACCCCACATCGGGAAATTTGCGTATTTTTGCAGTTGCAGTCGACCCACAACAAGAATTGCCCAAAAACAACCCTCAGAGACTGCTAAAAGAGCTCGCGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTGCCCCCAAGAAGGTATATTCTTCGGCCGCCACTGGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTATTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCCGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAACAAGCCCTTGGATACCCCCTTGAGCCCTCCGATACATCCCTCATGCGAAAGAACAAAGGCACGACACATAAGATCAGGGCACTCCAGGCTTTTGTTTTTGGGGCAATACGTGCTCGAATTGGCGTTAGCAGAAGGTATCCGAGGGAGTCGCCTGGTCCAATGAGGAAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAAGTGGATTAAGGCTGCCAGTTTACAGAATTTGATATTCCCATATGATGATATGGATAAGCTGATCAGGAAGGACCAAGTGTATCGGGTCCTTTTCGAAGTGTTCGGAATGGATCCCGATTCAGAGGAATGTGAACCGAGATTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGATTGCAGGCAAGTTCTTAATCAAATGCAGCTTTGCCTTTTGCACCCATCAAAATACAAGTTCGAGCATCCTCGTTTCTGCTACGAACGATTAGAATACCTCGGCCCAAAGATCCAGGTTAAAAAAATTTAA

Protein sequence

MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIRARIGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAASLQNLIFPYDDMDKLIRKDQVYRVLFEVFGMDPDSEECEPRLRRQLEDVDYVSVDCRQVLNQMQLCLLHPSKYKFEHPRFCYERLEYLGPKIQVKKI

Homology

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BLAST of Carg18562 vs. NCBI nr
Match: KAG7026948.1 (Ribonuclease III domain-containing protein RNC1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 625.2 bits (1611), Expect = 3.1e-175
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIRAR 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIRAR
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIRAR 180

Query: 181 IGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAASLQNLIFPYDDMDKLIRKDQVYRVL 240
           IGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAASLQNLIFPYDDMDKLIRKDQVYRVL
Sbjct: 181 IGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAASLQNLIFPYDDMDKLIRKDQVYRVL 240

Query: 241 FEVFGMDPDSEECEPRLRRQLEDVDYVSVDCRQVLNQMQLCLLHPSKYKFEHPRFCYERL 300
           FEVFGMDPDSEECEPRLRRQLEDVDYVSVDCRQVLNQMQLCLLHPSKYKFEHPRFCYERL
Sbjct: 241 FEVFGMDPDSEECEPRLRRQLEDVDYVSVDCRQVLNQMQLCLLHPSKYKFEHPRFCYERL 300

Query: 301 EYLGPKIQVKKI 313
           EYLGPKIQVKKI
Sbjct: 301 EYLGPKIQVKKI 312

[Close]

BLAST of Carg18562 vs. NCBI nr
Match: XP_022963342.1 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 465.3 bits (1196), Expect = 4.1e-127
Identity = 267/429 (62.24%), Postives = 281/429 (65.50%), Query Frame = 0


Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT-------------------------SL 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+                         + 
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPSKQFDTXLYLAFQHPSCERTK 180

Query: 181 MRKNKGTTHKIRALQAFVFGAIRARIGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAA 240
            R  +    ++  L  +V     A   + +RYP+ESPGPMR+RVFALIGKRNLPKWIKAA
Sbjct: 181 ARHIRSGHSRLLFLGQYVLELALAEYFL-QRYPKESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEE 300
           SLQNLIFPYDDMDKLIRKD                       +VYRVLFEVFGMDPDSEE
Sbjct: 241 SLQNLIFPYDDMDKLIRKDREPPVKSVFWALFGAIYLCFGIPEVYRVLFEVFGMDPDSEE 300

Query: 301 CEPRLRRQLEDVDYVSVDCR---------------------------------------- 309
           CEPRLRRQLEDVDYVSV+                                          
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMITYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

[Close]

BLAST of Carg18562 vs. NCBI nr
Match: XP_023003680.1 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 456.1 bits (1172), Expect = 2.5e-124
Identity = 265/431 (61.48%), Postives = 276/431 (64.04%), Query Frame = 0


Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVK SSSTNYSFSSSFTPFIVK+HPNSPNFPNPTSG+LRIFAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVF------ 180
           PSSRLNNA KTW DEYLLEAKQALGYPLEPSD+     N     +   L    F      
Sbjct: 121 PSSRLNNAXKTWTDEYLLEAKQALGYPLEPSDS---YGNDNPAKQFDTLLYLAFQHPSCE 180

Query: 181 --GAIRARIGVSR-------------------RYPRESPGPMRKRVFALIGKRNLPKWIK 240
              A   R G SR                   RYPRESPGPMR+RVFALIGKRNLPKWIK
Sbjct: 181 RTKARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIK 240

Query: 241 AASLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDS 300
           AASLQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGMDPDS
Sbjct: 241 AASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDS 300

Query: 301 EECEPRLRRQLEDVDYVSVDCR-------------------------------------- 309
           EECEPRLRRQLEDVDYVSV+                                        
Sbjct: 301 EECEPRLRRQLEDVDYVSVEFEDKKISWQDMIAYKPPEDALFAHPRLFRACVPPGMHRFR 360

[Close]

BLAST of Carg18562 vs. NCBI nr
Match: XP_023518761.1 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 455.3 bits (1170), Expect = 4.3e-124
Identity = 262/429 (61.07%), Postives = 278/429 (64.80%), Query Frame = 0


Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVK SSSTNY FSSSFTPFIVK+HPNS NFPNPTSGNLR+FAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKFSSSTNYYFSSSFTPFIVKLHPNSLNFPNPTSGNLRVFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           +PQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  HPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT-------------------------SL 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+                         + 
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180

Query: 181 MRKNKGTTHKIRALQAFVFGAIRARIGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAA 240
            R  +    ++  L  +V     A   + +RYPRESPGPMR+R FALIGKRNLPKWIKAA
Sbjct: 181 ARHIRSGHSRLLFLGQYVLELALAEYFL-QRYPRESPGPMRERFFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEE 300
           SLQNLIFPYDDMDKLIRKD                       +VYRVLFEVFGMDPDSEE
Sbjct: 241 SLQNLIFPYDDMDKLIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDSEE 300

Query: 301 CEPRLRRQLEDVDYVSVDCR---------------------------------------- 309
           CEPRLRRQLEDVDYVSV+                                          
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMITYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

[Close]

BLAST of Carg18562 vs. NCBI nr
Match: XP_004141878.1 (ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucumis sativus] >KGN48593.1 hypothetical protein Csa_003755 [Cucumis sativus])

HSP 1 Score: 444.9 bits (1143), Expect = 5.8e-121
Identity = 254/428 (59.35%), Postives = 275/428 (64.25%), Query Frame = 0


Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVKLSS +NYSFSSS TPFIVKIHPN P FPNP+S NLR+FAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDK+LAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT--------------------SLMRKNK 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+                        + K
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180

Query: 181 GTTHKIRALQAFVFGAIRARIGVS----RRYPRESPGPMRKRVFALIGKRNLPKWIKAAS 240
               +    + F  G     + ++    +RYPRESPGPMR+RVFALIGKRNLPKWIKAAS
Sbjct: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240

Query: 241 LQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEEC 300
           LQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGMDPD++EC
Sbjct: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300

Query: 301 EPRLRRQLEDVDYVSV-------------------------------------------- 309
           EPRLRRQLEDVDYVSV                                            
Sbjct: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360

[Close]

BLAST of Carg18562 vs. ExPASy Swiss-Prot
Match: Q9SZV0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.6e-89
Identity = 214/428 (50.00%), Postives = 241/428 (56.31%), Query Frame = 0


Query: 4   SSSFVKL--SSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKNN 63
           SSS +++  SS+   SFSSS + F  K              NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+R+ILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAI-RAR 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+ SL   N           AF   +  RAR
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSE-SLGDDNPAKHFDTLLYLAFQHPSCDRAR 188

Query: 184 I-----GVSR-------------------RYPRESPGPMRKRVFALIGKRNLPKWIKAAS 243
                 G SR                   RYPRESPGPMR+RVFALIGKR LPKWIKAAS
Sbjct: 189 ARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAAS 248

Query: 244 LQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEEC 303
           LQNLIFPYDDMDKLIRK+                       +VYRVLFEVFGMDPD++EC
Sbjct: 249 LQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADEC 308

Query: 304 EPRLRRQLEDVDYVSVD------------------------------------------- 309
           +PR RRQLEDVDYVSV+                                           
Sbjct: 309 QPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNI 368

[Close]

BLAST of Carg18562 vs. ExPASy Swiss-Prot
Match: A6YSL1 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=4577 GN=RNC1 PE=1 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.3e-80
Identity = 181/400 (45.25%), Postives = 221/400 (55.25%), Query Frame = 0


Query: 40  TSGNLRIFAVAVD------PQQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPL 99
           +S  +R+ AVA D      P  E P N+P RLL+ELA+RK+A SPKKK PPRR+IL+PPL
Sbjct: 23  SSRRVRVLAVAADQTPPPAPPSE-PANSPSRLLRELAQRKKAVSPKKKHPPRRFILKPPL 82

Query: 100 DDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT 159
           DD++L  RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMDEYLLEAKQALGYPL PS+T
Sbjct: 83  DDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMDEYLLEAKQALGYPLAPSET 142

Query: 160 -----------------------------SLMRKNKGTTHKIRALQAFVFGAIRARIGVS 219
                                        + MR  +    ++  L  +V         + 
Sbjct: 143 LGEGDDCPARHFDVLFYLAFQHLDPSSERTRMRHVRNGHSRLWFLGQYVLELAFCEFFL- 202

Query: 220 RRYPRESPGPMRKRVFALIGKRNLPKWIKAASLQNLIFPYDDMDKLIRKD---------- 279
           +RYPRESPGPMR+RVFALIGK+ LP+W+KAASL NL+FPYDD+DK+IRKD          
Sbjct: 203 QRYPRESPGPMRERVFALIGKKVLPRWLKAASLHNLVFPYDDLDKMIRKDREPPSKAVFW 262

Query: 280 -------------QVYRVLFEVFGMDPDSEECEPRLRRQLEDVDYVSVDC--RQVLNQ-- 309
                        +VYRVLFE FGMDPD E C+P+LRRQLEDVDYVSV+   RQ+  Q  
Sbjct: 263 AIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDV 322

[Close]

BLAST of Carg18562 vs. ExPASy Swiss-Prot
Match: Q8S1Z0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 5.7e-79
Identity = 181/402 (45.02%), Postives = 217/402 (53.98%), Query Frame = 0


Query: 44  LRIFAVAVD---------PQQELPKNNPQRLLKELAERKRATSPKKKVPPRRYILRPPLD 103
           +R+ AVA D              P N+P RLL+ELAERK+A SPKKK PPRR+IL+PPLD
Sbjct: 29  VRVLAVAADHTPPPPPSPSSPPEPANSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLD 88

Query: 104 DKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTS 163
           D++L +RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMDEYLLEAKQALGYPL PS+T 
Sbjct: 89  DERLTQRFLSSPQLSLKALPLLSSCLPSAPLSAADRTWMDEYLLEAKQALGYPLAPSETL 148

Query: 164 LMRKNKGTTHKIRALQAFVFGAIR-------------ARIGVSR---------------- 223
               + G     R     ++ A +              R G SR                
Sbjct: 149 GDGDDDGC--PARHFDVLLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEF 208

Query: 224 ---RYPRESPGPMRKRVFALIGKRNLPKWIKAASLQNLIFPYDDMDKLIRKD-------- 283
              RYPRESPGPMR+RVFALIGKR +PKWIKAASL NL+FPYDD+DK+IRKD        
Sbjct: 209 FLQRYPRESPGPMRERVFALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAV 268

Query: 284 ---------------QVYRVLFEVFGMDPDSEECEPRLRRQLEDVDYVSVDCR------- 309
                          +VYRVLFE FGMDP+ E C+P+LRRQLEDVDYVSV+         
Sbjct: 269 FWALFGAIYLCFGMPEVYRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQ 328

[Close]

BLAST of Carg18562 vs. ExPASy TrEMBL
Match: A0A6J1HF14 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111463577 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 2.0e-127
Identity = 267/429 (62.24%), Postives = 281/429 (65.50%), Query Frame = 0


Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT-------------------------SL 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+                         + 
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPSKQFDTXLYLAFQHPSCERTK 180

Query: 181 MRKNKGTTHKIRALQAFVFGAIRARIGVSRRYPRESPGPMRKRVFALIGKRNLPKWIKAA 240
            R  +    ++  L  +V     A   + +RYP+ESPGPMR+RVFALIGKRNLPKWIKAA
Sbjct: 181 ARHIRSGHSRLLFLGQYVLELALAEYFL-QRYPKESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEE 300
           SLQNLIFPYDDMDKLIRKD                       +VYRVLFEVFGMDPDSEE
Sbjct: 241 SLQNLIFPYDDMDKLIRKDREPPVKSVFWALFGAIYLCFGIPEVYRVLFEVFGMDPDSEE 300

Query: 301 CEPRLRRQLEDVDYVSVDCR---------------------------------------- 309
           CEPRLRRQLEDVDYVSV+                                          
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMITYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

[Close]

BLAST of Carg18562 vs. ExPASy TrEMBL
Match: A0A6J1KSH3 (LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111497202 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.2e-124
Identity = 265/431 (61.48%), Postives = 276/431 (64.04%), Query Frame = 0


Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVK SSSTNYSFSSSFTPFIVK+HPNSPNFPNPTSG+LRIFAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKFSSSTNYSFSSSFTPFIVKLHPNSPNFPNPTSGDLRIFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVF------ 180
           PSSRLNNA KTW DEYLLEAKQALGYPLEPSD+     N     +   L    F      
Sbjct: 121 PSSRLNNAXKTWTDEYLLEAKQALGYPLEPSDS---YGNDNPAKQFDTLLYLAFQHPSCE 180

Query: 181 --GAIRARIGVSR-------------------RYPRESPGPMRKRVFALIGKRNLPKWIK 240
              A   R G SR                   RYPRESPGPMR+RVFALIGKRNLPKWIK
Sbjct: 181 RTKARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIK 240

Query: 241 AASLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDS 300
           AASLQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGMDPDS
Sbjct: 241 AASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDS 300

Query: 301 EECEPRLRRQLEDVDYVSVDCR-------------------------------------- 309
           EECEPRLRRQLEDVDYVSV+                                        
Sbjct: 301 EECEPRLRRQLEDVDYVSVEFEDKKISWQDMIAYKPPEDALFAHPRLFRACVPPGMHRFR 360

[Close]

BLAST of Carg18562 vs. ExPASy TrEMBL
Match: A0A0A0KGG7 (RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.8e-121
Identity = 254/428 (59.35%), Postives = 275/428 (64.25%), Query Frame = 0


Query: 1   MELSSSFVKLSSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKN 60
           MELSSSFVKLSS +NYSFSSS TPFIVKIHPN P FPNP+S NLR+FAVAVDPQQELPKN
Sbjct: 1   MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60

Query: 61  NPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCL 120
           NPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDK+LAERFLNSPQLTLKSFPLLSSCL
Sbjct: 61  NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120

Query: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDT--------------------SLMRKNK 180
           PSSRLNNADKTWMDEYLLEAKQALGYPLEPSD+                        + K
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180

Query: 181 GTTHKIRALQAFVFGAIRARIGVS----RRYPRESPGPMRKRVFALIGKRNLPKWIKAAS 240
               +    + F  G     + ++    +RYPRESPGPMR+RVFALIGKRNLPKWIKAAS
Sbjct: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240

Query: 241 LQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEEC 300
           LQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGMDPD++EC
Sbjct: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300

Query: 301 EPRLRRQLEDVDYVSV-------------------------------------------- 309
           EPRLRRQLEDVDYVSV                                            
Sbjct: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFRGNI 360

[Close]

BLAST of Carg18562 vs. ExPASy TrEMBL
Match: A0A1S3B1J9 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484834 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.6e-121
Identity = 261/435 (60.00%), Postives = 277/435 (63.68%), Query Frame = 0


Query: 1   MELSSSFVKLSS-STNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPK 60
           MELSSSFVKLSS S NYSFSSS TPFIVKIHPN P FPNP+SGNLRIFAVAVDPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIR- 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPL+PSD      + G  +  +     ++ A + 
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSD------SYGDDNPAKQFDTLLYLAFQH 180

Query: 181 ----------ARIGVSR-------------------RYPRESPGPMRKRVFALIGKRNLP 240
                      R G SR                   RYPRESPGPMR+RVFALIGKRNLP
Sbjct: 181 PSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLP 240

Query: 241 KWIKAASLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGM 300
           KWIKAASLQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGM
Sbjct: 241 KWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGM 300

Query: 301 DPDSEECEPRLRRQLEDVDYVSV------------------------------------- 309
           DPD+EECEPRLRRQLEDVDYVSV                                     
Sbjct: 301 DPDAEECEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGM 360

[Close]

BLAST of Carg18562 vs. ExPASy TrEMBL
Match: A0A6J1BVK6 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005910 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 1.5e-119
Identity = 257/435 (59.08%), Postives = 277/435 (63.68%), Query Frame = 0


Query: 1   MELSSSFVKLSSST-NYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPK 60
           MELSSSFV+L+S T NYSFSSS TPF  KI+PN+P+FPNPTSGNLRIFAVAVDPQQELPK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKK+VPPRR+ILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAIR- 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD      N G  +  +     ++ A + 
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSD------NYGDDNPAKQFDTLLYLAFQH 180

Query: 181 ----------ARIGVSR-------------------RYPRESPGPMRKRVFALIGKRNLP 240
                      R G SR                   RYPRESPGPMR+RVFALIGKR+LP
Sbjct: 181 PSCERTKARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLP 240

Query: 241 KWIKAASLQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGM 300
           KWIKAASLQNLIFPYDDMDK+IRKD                       +VYRVLFEVFGM
Sbjct: 241 KWIKAASLQNLIFPYDDMDKMIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGM 300

Query: 301 DPDSEECEPRLRRQLEDVDYVSV------------------------------------- 309
           DPD+EECEPRLRRQLEDVDYVSV                                     
Sbjct: 301 DPDAEECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGM 360

[Close]

BLAST of Carg18562 vs. TAIR 10
Match: AT4G37510.1 (Ribonuclease III family protein )

HSP 1 Score: 330.9 bits (847), Expect = 1.1e-90
Identity = 214/428 (50.00%), Postives = 241/428 (56.31%), Query Frame = 0


Query: 4   SSSFVKL--SSSTNYSFSSSFTPFIVKIHPNSPNFPNPTSGNLRIFAVAVDPQQELPKNN 63
           SSS +++  SS+   SFSSS + F  K              NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRYILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+R+ILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWMDEYLLEAKQALGYPLEPSDTSLMRKNKGTTHKIRALQAFVFGAI-RAR 183
           SS+LNNADKTW+DEYLLE KQALGY LEPS+ SL   N           AF   +  RAR
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSE-SLGDDNPAKHFDTLLYLAFQHPSCDRAR 188

Query: 184 I-----GVSR-------------------RYPRESPGPMRKRVFALIGKRNLPKWIKAAS 243
                 G SR                   RYPRESPGPMR+RVFALIGKR LPKWIKAAS
Sbjct: 189 ARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAAS 248

Query: 244 LQNLIFPYDDMDKLIRKD-----------------------QVYRVLFEVFGMDPDSEEC 303
           LQNLIFPYDDMDKLIRK+                       +VYRVLFEVFGMDPD++EC
Sbjct: 249 LQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADEC 308

Query: 304 EPRLRRQLEDVDYVSVD------------------------------------------- 309
           +PR RRQLEDVDYVSV+                                           
Sbjct: 309 QPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNI 368

The following BLAST results are available for this feature:

BLAST of Carg18562 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026948.1	3.1e-175	100.00	Ribonuclease III domain-containing protein RNC1, chloroplastic, partial [Cucurbi...	[more]
XP_022963342.1	4.1e-127	62.24	LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas...	[more]
XP_023003680.1	2.5e-124	61.48	LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas...	[more]
XP_023518761.1	4.3e-124	61.07	LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas...	[more]
XP_004141878.1	5.8e-121	59.35	ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucum...	[more]

BLAST of Carg18562 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZV0	1.6e-89	50.00	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th...	[more]
A6YSL1	1.3e-80	45.25	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=45...	[more]
Q8S1Z0	5.7e-79	45.02	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s...	[more]

BLAST of Carg18562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HF14	2.0e-127	62.24	LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas...	[more]
A0A6J1KSH3	1.2e-124	61.48	LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplas...	[more]
A0A0A0KGG7	2.8e-121	59.35	RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 P...	[more]
A0A1S3B1J9	3.6e-121	60.00	ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo O...	[more]
A0A6J1BVK6	1.5e-119	59.08	ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica char...	[more]

BLAST of Carg18562 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37510.1	1.1e-90	50.00	Ribonuclease III family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 1..155 coord: 185..271
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 278..308
None	No IPR available	PANTHER	PTHR11207:SF21	RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTIC	coord: 1..155
None	No IPR available	PANTHER	PTHR11207:SF21	RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTIC	coord: 185..271
None	No IPR available	PANTHER	PTHR11207:SF21	RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTIC	coord: 278..308

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18562-RA	Carg18562-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016075	rRNA catabolic process
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding