Carg18553 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18553
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 2924393 .. 2924606 (-)
RNA-Seq ExpressionCarg18553
SyntenyCarg18553
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTATTCTAAACGTACCTGTCCGTGAAGATTGGTAAAAAAGAAGCAGCAGAGTATCAGAGTCAACCGGAGATGCTCCGTCATGGTCATCATTTCTCCGTCTTCGCCTTCGAATTTTGAAGTACAGAGGATGAAGCGATTCTCCTCCGTCGTCGAATGGAAGGAAGCGACAGTTTTGGCCTCAGTTTCCGTTTCCGACGACTCTGTTTAA

mRNA sequence

ATGGGATTGGTAAAAAAGAAGCAGCAGAGTATCAGAGTCAACCGGAGATGCTCCGTCATGGTCATCATTTCTCCGTCTTCGCCTTCGAATTTTGAAGTACAGAGGATGAAGCGATTCTCCTCCGTCGTCGAATGGAAGGAAGCGACAGTTTTGGCCTCAGTTTCCGTTTCCGACGACTCTGTTTAA

Coding sequence (CDS)

ATGGGATTGGTAAAAAAGAAGCAGCAGAGTATCAGAGTCAACCGGAGATGCTCCGTCATGGTCATCATTTCTCCGTCTTCGCCTTCGAATTTTGAAGTACAGAGGATGAAGCGATTCTCCTCCGTCGTCGAATGGAAGGAAGCGACAGTTTTGGCCTCAGTTTCCGTTTCCGACGACTCTGTTTAA

Protein sequence

MGLVKKKQQSIRVNRRCSVMVIISPSSPSNFEVQRMKRFSSVVEWKEATVLASVSVSDDSV
Homology
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BLAST of Carg18553 vs. NCBI nr
Match: KAG7026939.1 (hypothetical protein SDJN02_10947, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGLVKKKQQSIRVNRRCSVMVIISPSSPSNFEVQRMKRFSSVVEWKEATVLASVSVSDDS 60
          MGLVKKKQQSIRVNRRCSVMVIISPSSPSNFEVQRMKRFSSVVEWKEATVLASVSVSDDS
Sbjct: 1  MGLVKKKQQSIRVNRRCSVMVIISPSSPSNFEVQRMKRFSSVVEWKEATVLASVSVSDDS 60

Query: 61 V 62
          V
Sbjct: 61 V 61

The following BLAST results are available for this feature:
BLAST of Carg18553 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026939.11.6e-22100.00hypothetical protein SDJN02_10947, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg18553 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18553 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg18553 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18553-RACarg18553-RAmRNA