Carg18551 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18551
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription factor GRAS
Location	Carg_Chr07: 2915594 .. 2917072 (+)
RNA-Seq Expression	Carg18551
Synteny	Carg18551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACCTTGTTTCGGCTTGTCAATCTTCAGTCCGAACAATCTTACAACTCCAGTAGAAGTAGAACCAATTCTAGCAGCTCCAGATCGTCTAGACAAAACCAATATCATTACCATCAACAGGAAGACGAAGAATGCTACAACGTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCTTACCTTCCCAACCCATCTTCCACCGTCTGCACCACGCCCACCGCCACCACCCCAACCCCGATCGATCAATTCTCATTCGTCTCCCCCGCTCCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTGGAAACCGCCAGGGCCATTTCTGACAGGAATAGTGCTCGTGTTCAGCAGCTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTCCTGCAGGCCTTGTTTACCCGCATGACTGATTCCGGCGACCGTAATTATCGCGCTTTGTCCTCCGCCTCAGAGAAATCATGCTCATTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATAATCGATATCAGTAACACGTATTGCACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGATACGCCCCACCTACGCCTCACAACTGTCGTCATCACTAAGCCCGGCGATGGAAGTGGAGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTATACCATTCCGGTGACCTTTCAGATTTGGACTTGGCGAAATTAGACATCAAAGAAGACGAGGCACTCGCCGTCAACTGCATCGGAGCGTTACATTCCGTGGCGGCAGTTGATAACCGCCGAGATTTCTTGATTGCATCTTTCCGCAGTTTACGGCCGCGGATAATCACAGTGATAGAAGAGGAAGCCGACCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGTGGGTTCCAAGAATGTCTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACAAGCAACGAGCGGTTGATGCTTGAGAGAGCAGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCAGCGGAGTCGGTGGAGAGAAGGGAATCGGCAGCGCGGTGGGCACAGCGGTTGCATGGAAGCGGTTTCAGTCCGCTGATATTCAGCGACGAAGTATGCGACGACGTAAGGGCACTATTGAGGAGGTACAAGGAAGGGTGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAAACCTTGA

mRNA sequence

ATGGATACCTTGTTTCGGCTTGTCAATCTTCAGTCCGAACAATCTTACAACTCCAGTAGAAGTAGAACCAATTCTAGCAGCTCCAGATCGTCTAGACAAAACCAATATCATTACCATCAACAGGAAGACGAAGAATGCTACAACGTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCTTACCTTCCCAACCCATCTTCCACCGTCTGCACCACGCCCACCGCCACCACCCCAACCCCGATCGATCAATTCTCATTCGTCTCCCCCGCTCCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTGGAAACCGCCAGGGCCATTTCTGACAGGAATAGTGCTCGTGTTCAGCAGCTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTCCTGCAGGCCTTGTTTACCCGCATGACTGATTCCGGCGACCGTAATTATCGCGCTTTGTCCTCCGCCTCAGAGAAATCATGCTCATTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATAATCGATATCAGTAACACGTATTGCACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGATACGCCCCACCTACGCCTCACAACTGTCGTCATCACTAAGCCCGGCGATGGAAGTGGAGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTATACCATTCCGGTGACCTTTCAGATTTGGACTTGGCGAAATTAGACATCAAAGAAGACGAGGCACTCGCCGTCAACTGCATCGGAGCGTTACATTCCGTGGCGGCAGTTGATAACCGCCGAGATTTCTTGATTGCATCTTTCCGCAGTTTACGGCCGCGGATAATCACAGTGATAGAAGAGGAAGCCGACCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGTGGGTTCCAAGAATGTCTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACAAGCAACGAGCGGTTGATGCTTGAGAGAGCAGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCAGCGGAGTCGGTGGAGAGAAGGGAATCGGCAGCGCGGTGGGCACAGCGGTTGCATGGAAGCGGTTTCAGTCCGCTGATATTCAGCGACGAAGTATGCGACGACGTAAGGGCACTATTGAGGAGGTACAAGGAAGGGTGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAAACCTTGA

Coding sequence (CDS)

ATGGATACCTTGTTTCGGCTTGTCAATCTTCAGTCCGAACAATCTTACAACTCCAGTAGAAGTAGAACCAATTCTAGCAGCTCCAGATCGTCTAGACAAAACCAATATCATTACCATCAACAGGAAGACGAAGAATGCTACAACGTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCTTACCTTCCCAACCCATCTTCCACCGTCTGCACCACGCCCACCGCCACCACCCCAACCCCGATCGATCAATTCTCATTCGTCTCCCCCGCTCCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTGGAAACCGCCAGGGCCATTTCTGACAGGAATAGTGCTCGTGTTCAGCAGCTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTCCTGCAGGCCTTGTTTACCCGCATGACTGATTCCGGCGACCGTAATTATCGCGCTTTGTCCTCCGCCTCAGAGAAATCATGCTCATTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGGCATGTTTCTTGCAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATAATCGATATCAGTAACACGTATTGCACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGATACGCCCCACCTACGCCTCACAACTGTCGTCATCACTAAGCCCGGCGATGGAAGTGGAGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTATACCATTCCGGTGACCTTTCAGATTTGGACTTGGCGAAATTAGACATCAAAGAAGACGAGGCACTCGCCGTCAACTGCATCGGAGCGTTACATTCCGTGGCGGCAGTTGATAACCGCCGAGATTTCTTGATTGCATCTTTCCGCAGTTTACGGCCGCGGATAATCACAGTGATAGAAGAGGAAGCCGACCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGTGGGTTCCAAGAATGTCTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACAAGCAACGAGCGGTTGATGCTTGAGAGAGCAGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCAGCGGAGTCGGTGGAGAGAAGGGAATCGGCAGCGCGGTGGGCACAGCGGTTGCATGGAAGCGGTTTCAGTCCGCTGATATTCAGCGACGAAGTATGCGACGACGTAAGGGCACTATTGAGGAGGTACAAGGAAGGGTGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAAACCTTGA

Protein sequence

MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSSNSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP

Homology

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BLAST of Carg18551 vs. NCBI nr
Match: KAG7026937.1 (Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 978.0 bits (2527), Expect = 3.0e-281
Identity = 492/492 (100.00%), Postives = 492/492 (100.00%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60
           MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS
Sbjct: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60

Query: 61  NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA
Sbjct: 61  NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS
Sbjct: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA
Sbjct: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS
Sbjct: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE
Sbjct: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK
Sbjct: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAWKP
Sbjct: 481 EQPVVWASAWKP 492

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BLAST of Carg18551 vs. NCBI nr
Match: KAG6594979.1 (Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 973.8 bits (2516), Expect = 5.6e-280
Identity = 490/492 (99.59%), Postives = 491/492 (99.80%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60
           MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS
Sbjct: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60

Query: 61  NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSG+WAPDILLETARA
Sbjct: 61  NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGKWAPDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS
Sbjct: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA
Sbjct: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS
Sbjct: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLSDLDLAKLDIKEDEALAVNCIGAL SVAAVDNRRDFLIASFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE
Sbjct: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK
Sbjct: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAWKP
Sbjct: 481 EQPVVWASAWKP 492

[Close]

BLAST of Carg18551 vs. NCBI nr
Match: XP_023003798.1 (protein SHORT-ROOT-like [Cucurbita maxima] >XP_023517414.1 protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 969.9 bits (2506), Expect = 8.1e-279
Identity = 489/492 (99.39%), Postives = 490/492 (99.59%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60
           MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS
Sbjct: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60

Query: 61  NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           NSRQYYNPYLPNPSSTV TTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA
Sbjct: 61  NSRQYYNPYLPNPSSTVSTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEK+
Sbjct: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKT 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA
Sbjct: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS
Sbjct: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLSDLDLAKLDIKEDEALAVNCIGAL SVAAVDNRRDFLIASFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE
Sbjct: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK
Sbjct: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAWKP
Sbjct: 481 EQPVVWASAWKP 492

[Close]

BLAST of Carg18551 vs. NCBI nr
Match: XP_022962666.1 (protein SHORT-ROOT-like [Cucurbita moschata])

HSP 1 Score: 969.1 bits (2504), Expect = 1.4e-278
Identity = 489/492 (99.39%), Postives = 490/492 (99.59%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60
           MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEE+FSSSS
Sbjct: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEENFSSSS 60

Query: 61  NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           NSRQYYNPYLPNPSSTV TTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA
Sbjct: 61  NSRQYYNPYLPNPSSTVSTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS
Sbjct: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA
Sbjct: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS
Sbjct: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLSDLDLAKLDIKEDEALAVNCIGAL SVAAVDNRRDFLIASFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE
Sbjct: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK
Sbjct: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAWKP
Sbjct: 481 EQPVVWASAWKP 492

[Close]

BLAST of Carg18551 vs. NCBI nr
Match: XP_038883581.1 (protein SHORT-ROOT-like [Benincasa hispida])

HSP 1 Score: 897.1 bits (2317), Expect = 6.7e-257
Identity = 452/494 (91.50%), Postives = 474/494 (95.95%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60
           MDTLFRLVNLQSEQSYNS  SRTNSSSSRSSRQNQYHYHQ EDEECYN+LMD+EDFSSSS
Sbjct: 1   MDTLFRLVNLQSEQSYNS--SRTNSSSSRSSRQNQYHYHQHEDEECYNLLMDDEDFSSSS 60

Query: 61  NSRQYYNPYLPNPSSTVC-TTPTA-TTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETA 120
           NSRQYYNPY P+P ST   TT TA TTPTPIDQFSF SP+PDFNFEFSGRWAPDILLETA
Sbjct: 61  NSRQYYNPYHPHPPSTATPTTATASTTPTPIDQFSFASPSPDFNFEFSGRWAPDILLETA 120

Query: 121 RAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASE 180
           RAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALF+RMTDSGDRNYRAL+SASE
Sbjct: 121 RAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASE 180

Query: 181 KSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLL 240
           K+CSFESTRK+MLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLL
Sbjct: 181 KTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLL 240

Query: 241 EALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLY 300
           EALATRTDDTPHLRLTTVV +KP  G+GVAASQKVMKEIGTRMEKFARLMGVPFKF+ LY
Sbjct: 241 EALATRTDDTPHLRLTTVVTSKPSGGTGVAASQKVMKEIGTRMEKFARLMGVPFKFNALY 300

Query: 301 HSGDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEE 360
           HSGDLS+LD AKLDIKEDEALAVNC+GAL SVAA++NRRDFLI+SFRSLRPRIITVIEEE
Sbjct: 301 HSGDLSELDFAKLDIKEDEALAVNCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEE 360

Query: 361 ADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSA 420
           ADLDVGVDGIEF+ GFQECLRWFRVYFETLDESF+RTSNERLMLERAAGRAIVDLVACSA
Sbjct: 361 ADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSA 420

Query: 421 AESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLT 480
           A+SVERRESAARW QRLHG+GFSP+ FSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLT
Sbjct: 421 ADSVERRESAARWTQRLHGNGFSPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLT 480

Query: 481 WKEQPVVWASAWKP 493
           WKEQPVVWASAW+P
Sbjct: 481 WKEQPVVWASAWRP 492

[Close]

BLAST of Carg18551 vs. ExPASy Swiss-Prot
Match: Q9SZF7 (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 587.0 bits (1512), Expect = 1.9e-166
Identity = 314/532 (59.02%), Postives = 392/532 (73.68%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQ------SYNSSRSRTNSSSSRSSRQNQYHYH-QQED--EECYNVLM 60
           MDTLFRLV+LQ +Q      +  SS SRT S+++  S Q  YHY+  Q D  EEC+N  M
Sbjct: 1   MDTLFRLVSLQQQQQSDSIITNQSSLSRT-STTTTGSPQTAYHYNFPQNDVVEECFNFFM 60

Query: 61  DEEDFSSSSNSRQYYNPYLPNPSSTVCTTPT----ATTPTPI------------------ 120
           DEED SSSS+   ++N   PN   +  TTPT    AT+ TP                   
Sbjct: 61  DEEDLSSSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGHH 120

Query: 121 ---DQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDT 180
                FS     P F+F  + +WA  +LLE ARA SD+++AR QQ++W LNELSSPYGDT
Sbjct: 121 NDPSAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDT 180

Query: 181 DQKLAAYFLQALFTRMTDSGDRNYRAL--SSASEKSCSFESTRKMMLKFQEVSPWTTFGH 240
           +QKLA+YFLQALF RMT SG+R YR +  ++A+EK+CSFESTRK +LKFQEVSPW TFGH
Sbjct: 181 EQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGH 240

Query: 241 VSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDG 300
           V+ NGA++EA++GE+K+HI+DIS+T+CTQWPTLLEALATR+DDTPHLRLTTVV+      
Sbjct: 241 VAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANK-FV 300

Query: 301 SGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCI 360
           +   AS ++MKEIG RMEKFARLMGVPFKF+ ++H GDLS+ DL +LD+K DE LA+NC+
Sbjct: 301 NDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCV 360

Query: 361 GALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADL---DVGVDGIEFLSGFQECLRWF 420
           GA+H +A+  + RD +I+SFR LRPRI+TV+EEEADL   + G    EFL GF ECLRWF
Sbjct: 361 GAMHGIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWF 420

Query: 421 RVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFS 480
           RV FE+ +ESF RTSNERLMLERAAGRAIVDLVAC  ++S ERRE+A +W++R+  SGF 
Sbjct: 421 RVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFG 480

Query: 481 PLIFSDEVCDDVRALLRRYKEG-WAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
            + +SDEV DDVRALLRRYKEG W+M Q  D AGIFL W++QPVVWASAW+P
Sbjct: 481 AVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWRP 530

[Close]

BLAST of Carg18551 vs. ExPASy Swiss-Prot
Match: Q75I13 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 1.1e-134
Identity = 291/610 (47.70%), Postives = 371/610 (60.82%), Query Frame = 0


Query: 1   MDTLFRLVNL----------------QSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQED- 60
           MDTLFRLV+L                Q  +SY SSR  T+S SS  +  + Y++H     
Sbjct: 1   MDTLFRLVSLHHHHHHQHAASPSPPDQPHKSYPSSRGSTSSPSSHHTHNHTYYHHSHSHY 60

Query: 61  --------------------------------EECYN--VLMDEEDFSSSSNSRQYYNPY 120
                                           EEC N      +EDFSSSS+SRQ+++  
Sbjct: 61  NNNSNTNYYYQGGGGGGGGYYYAEEQQPAAYLEECGNGHQFYMDEDFSSSSSSRQFHSGT 120

Query: 121 LPNPSSTVCTTPTATTPTP-----IDQFSFVSPAPDFNFEF------------------- 180
               S+ V   P+ATT +       +   F  P  D + +F                   
Sbjct: 121 GAPSSAPVPPPPSATTSSAGGHGLFEAADFSFPQVDISLDFGGSPAVPSSSGAGAGAGAA 180

Query: 181 ---SGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRM 240
              SGRWA  +L+E ARA++ R+S RVQQLMWMLNEL+SPYGD DQKLA+YFLQ LF R+
Sbjct: 181 PSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARL 240

Query: 241 TDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEA-LEG---- 300
           T SG R  R L++AS+++ SF+STR+  LKFQE+SPWT FGHV+ NGA++E+ LE     
Sbjct: 241 TTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAG 300

Query: 301 --------------ESKLHIIDISNTYCTQWPTLLEALATR-TDDTPHLRLTTVVITKPG 360
                          ++LHI+D+SNT+CTQWPTLLEALATR +DDTPHL +TTVV T   
Sbjct: 301 AAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPT--- 360

Query: 361 DGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKE---DEAL 420
             +  AA+Q+VM+EIG R+EKFARLMGVPF F  ++HSGDL+DLDLA LD++E     AL
Sbjct: 361 -AAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAAL 420

Query: 421 AVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADL-----DVGVDG---IEFL 480
           AVNC+ AL  VA     RD  +AS R L PR++TV+EEEADL     D   +      F+
Sbjct: 421 AVNCVNALRGVA---RGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFV 480

Query: 481 SGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARW 493
             F E LR+F  Y ++L+ESF +TSNERL LERA GRAIVDLV+C A++S ERRE+AA W
Sbjct: 481 KVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQSAERRETAASW 540

[Close]

BLAST of Carg18551 vs. ExPASy Swiss-Prot
Match: A2YN56 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 2.6e-134
Identity = 267/529 (50.47%), Postives = 351/529 (66.35%), Query Frame = 0


Query: 34  NQYHYHQQEDEECYNV----LMDEEDFSSSSNSRQYYN-PYLPNPSSTVCTTPTATTPTP 93
           +QY+Y +   EEC N     L  +EDFSSSS+SR +++   +        +TPT T PTP
Sbjct: 76  SQYYYLEPYQEECGNAPHHQLYMDEDFSSSSSSRHFHHGAPVQQQQPPASSTPTGTAPTP 135

Query: 94  --------------IDQFSFVSPAPDFNFEFS---------------------GRWAPDI 153
                         + + + +S  PD N +FS                     GRWA  +
Sbjct: 136 PLSTSSTAAGAGHGLFEAADLSFPPDLNLDFSSPASSSGGGTASSGAVGGGGGGRWASQL 195

Query: 154 LLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRAL 213
           LLE AR+++ R+S RVQQLMWMLNEL+SPYGD +QKLA+YFLQ LF R+T SG R  R L
Sbjct: 196 LLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTL 255

Query: 214 SSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIE--------ALEGESKLHIID 273
           ++AS+++ SF+STR+  L+FQE+SPW++FGHV+ NGA++E        A     + HI+D
Sbjct: 256 AAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILD 315

Query: 274 ISNTYCTQWPTLLEALATRT-DDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKF 333
           +SNT+CTQWPTLLEALATR+ D+TPHL +TTVV   P   +  AA Q+VM+EIG RMEKF
Sbjct: 316 LSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAP--SAPTAAVQRVMREIGQRMEKF 375

Query: 334 ARLMGVPFKFHTLYHSGDLSDLDLAKLDIKE---DEALAVNCIGALHSVA-AVDNRRDFL 393
           ARLMGVPF+F  ++HSGDL++LDL  LD++E     ALAVNC+ +L  V      RRD  
Sbjct: 376 ARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAF 435

Query: 394 IASFRSLRPRIITVIEEEADL------------DVGVDGIEFLSGFQECLRWFRVYFETL 453
            AS R L PR++TV+EEEADL            + G     FL  F E LR+F  Y ++L
Sbjct: 436 AASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSL 495

Query: 454 DESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDE 493
           +ESF +TSNERL LER AGRAIVDLV+C A+ES+ERRE+AA WA+R+  +GFSP+ FS++
Sbjct: 496 EESFPKTSNERLALERGAGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSED 555

[Close]

BLAST of Carg18551 vs. ExPASy Swiss-Prot
Match: Q8H2X8 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 480.3 bits (1235), Expect = 2.6e-134
Identity = 267/529 (50.47%), Postives = 351/529 (66.35%), Query Frame = 0


Query: 34  NQYHYHQQEDEECYNV----LMDEEDFSSSSNSRQYYN-PYLPNPSSTVCTTPTATTPTP 93
           +QY+Y +   EEC N     L  +EDFSSSS+SR +++   +        +TPT T PTP
Sbjct: 76  SQYYYLEPYQEECGNAPHHQLYMDEDFSSSSSSRHFHHGARVQQQQPPASSTPTGTAPTP 135

Query: 94  --------------IDQFSFVSPAPDFNFEFS---------------------GRWAPDI 153
                         + + + +S  PD N +FS                     GRWA  +
Sbjct: 136 PLSTSSTAAGAGHGLFEAADLSFPPDLNLDFSSPASSSGGGTASSGAVGGGGGGRWASQL 195

Query: 154 LLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRAL 213
           LLE AR+++ R+S RVQQLMWMLNEL+SPYGD +QKLA+YFLQ LF R+T SG R  R L
Sbjct: 196 LLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTL 255

Query: 214 SSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIE--------ALEGESKLHIID 273
           ++AS+++ SF+STR+  L+FQE+SPW++FGHV+ NGA++E        A     + HI+D
Sbjct: 256 AAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILD 315

Query: 274 ISNTYCTQWPTLLEALATRT-DDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKF 333
           +SNT+CTQWPTLLEALATR+ D+TPHL +TTVV   P   +  AA Q+VM+EIG RMEKF
Sbjct: 316 LSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAP--SAPTAAVQRVMREIGQRMEKF 375

Query: 334 ARLMGVPFKFHTLYHSGDLSDLDLAKLDIKE---DEALAVNCIGALHSVA-AVDNRRDFL 393
           ARLMGVPF+F  ++HSGDL++LDL  LD++E     ALAVNC+ +L  V      RRD  
Sbjct: 376 ARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAF 435

Query: 394 IASFRSLRPRIITVIEEEADL------------DVGVDGIEFLSGFQECLRWFRVYFETL 453
            AS R L PR++TV+EEEADL            + G     FL  F E LR+F  Y ++L
Sbjct: 436 AASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSL 495

Query: 454 DESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDE 493
           +ESF +TSNERL LER AGRAIVDLV+C A+ES+ERRE+AA WA+R+  +GFSP+ FS++
Sbjct: 496 EESFPKTSNERLALERGAGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSED 555

[Close]

BLAST of Carg18551 vs. ExPASy Swiss-Prot
Match: A2XIA8 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 2.6e-134
Identity = 290/610 (47.54%), Postives = 371/610 (60.82%), Query Frame = 0


Query: 1   MDTLFRLVNL----------------QSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQED- 60
           MDTLFRLV+L                Q  +SY SSR  T+S SS  +  + Y++H     
Sbjct: 1   MDTLFRLVSLHHHHHHQHAASPSPPDQPHKSYPSSRGSTSSPSSHHTHNHTYYHHSHSHY 60

Query: 61  --------------------------------EECYN--VLMDEEDFSSSSNSRQYYNPY 120
                                           EEC N      +EDFSSSS+SRQ+++  
Sbjct: 61  NNNSNTNYYYQGGGGGGGGYYYAEEQQPAAYLEECGNGHQFYMDEDFSSSSSSRQFHSGT 120

Query: 121 LPNPSSTVCTTPTATTPTP-----IDQFSFVSPAPDFNFEF------------------- 180
               S+ V   P+ATT +       +   F  P  D + +F                   
Sbjct: 121 GAPSSAPVPPPPSATTSSAGGHGLFEAADFSFPQVDISLDFGGSPAVPSSSGAGAGAGAA 180

Query: 181 ---SGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRM 240
              SGRWA  +L+E ARA++ R+S RVQQLMWMLNEL+SPYGD DQKLA+YFLQ LF R+
Sbjct: 181 PSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARL 240

Query: 241 TDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEA-LEG---- 300
           T SG R  R L++AS+++ SF+STR+  LKFQE+SPWT FGHV+ NGA++E+ LE     
Sbjct: 241 TTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAG 300

Query: 301 --------------ESKLHIIDISNTYCTQWPTLLEALATR-TDDTPHLRLTTVVITKPG 360
                          ++LHI+D+SNT+CTQWPTLLEALATR +DDTPHL +TTVV T   
Sbjct: 301 AAAASSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPT--- 360

Query: 361 DGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKE---DEAL 420
             +  AA+Q+VM+EIG R+EKFARLMGVPF F  ++H+GDL+DLDLA LD++E     AL
Sbjct: 361 -AAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAAL 420

Query: 421 AVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADL-----DVGVDG---IEFL 480
           AVNC+ AL  VA     RD  +AS R L PR++TV+EEEADL     D   +      F+
Sbjct: 421 AVNCVNALRGVA---RGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFV 480

Query: 481 SGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARW 493
             F E LR+F  Y ++L+ESF +TSNERL LERA GRAIVDLV+C A++S ERRE+AA W
Sbjct: 481 KVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQSAERRETAASW 540

[Close]

BLAST of Carg18551 vs. ExPASy TrEMBL
Match: A0A6J1KXN4 (protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111497273 PE=3 SV=1)

HSP 1 Score: 969.9 bits (2506), Expect = 3.9e-279
Identity = 489/492 (99.39%), Postives = 490/492 (99.59%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60
           MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS
Sbjct: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60

Query: 61  NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           NSRQYYNPYLPNPSSTV TTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA
Sbjct: 61  NSRQYYNPYLPNPSSTVSTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEK+
Sbjct: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKT 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA
Sbjct: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS
Sbjct: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLSDLDLAKLDIKEDEALAVNCIGAL SVAAVDNRRDFLIASFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE
Sbjct: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK
Sbjct: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAWKP
Sbjct: 481 EQPVVWASAWKP 492

[Close]

BLAST of Carg18551 vs. ExPASy TrEMBL
Match: A0A6J1HDV6 (protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111463088 PE=3 SV=1)

HSP 1 Score: 969.1 bits (2504), Expect = 6.7e-279
Identity = 489/492 (99.39%), Postives = 490/492 (99.59%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSS 60
           MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEE+FSSSS
Sbjct: 1   MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEENFSSSS 60

Query: 61  NSRQYYNPYLPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120
           NSRQYYNPYLPNPSSTV TTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA
Sbjct: 61  NSRQYYNPYLPNPSSTVSTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARA 120

Query: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180
           ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS
Sbjct: 121 ISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKS 180

Query: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240
           CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA
Sbjct: 181 CSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEA 240

Query: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300
           LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS
Sbjct: 241 LATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHS 300

Query: 301 GDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360
           GDLSDLDLAKLDIKEDEALAVNCIGAL SVAAVDNRRDFLIASFRSLRPRIITVIEEEAD
Sbjct: 301 GDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEAD 360

Query: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420
           LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE
Sbjct: 361 LDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAE 420

Query: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480
           SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK
Sbjct: 421 SVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWK 480

Query: 481 EQPVVWASAWKP 493
           EQPVVWASAWKP
Sbjct: 481 EQPVVWASAWKP 492

[Close]

BLAST of Carg18551 vs. ExPASy TrEMBL
Match: A0A5A7T0T0 (Protein SHORT-ROOT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004060 PE=3 SV=1)

HSP 1 Score: 873.2 bits (2255), Expect = 5.0e-250
Identity = 447/497 (89.94%), Postives = 474/497 (95.37%), Query Frame = 0


Query: 1   MDTLFRLVNLQS-EQSYNSSRSRTNSSSSRSSRQNQY-HYHQQEDEECYNVLMDEEDFSS 60
           MDTLFRLVNLQS +QSYNSSRS TNSSSSRSSRQNQY HYHQQEDEECYN+LMD+EDFSS
Sbjct: 1   MDTLFRLVNLQSDQQSYNSSRS-TNSSSSRSSRQNQYHHYHQQEDEECYNLLMDDEDFSS 60

Query: 61  SSNSRQYY--NPY-LPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILL 120
           SSNSRQYY  NPY  P+PSST  TTPT     P+DQFSF+SP+PDFNFEFSGRWAPDILL
Sbjct: 61  SSNSRQYYNNNPYHPPHPSST--TTPT----PPLDQFSFLSPSPDFNFEFSGRWAPDILL 120

Query: 121 ETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSS 180
           ETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALF+RMTDSGDRNYRAL+S
Sbjct: 121 ETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALAS 180

Query: 181 ASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWP 240
           ASEK+CSFESTRK+MLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWP
Sbjct: 181 ASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWP 240

Query: 241 TLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFH 300
           TLLEALATRTDDTPHLRLTTVV TKP  G+G AASQKVMKEIGTRMEKFARLMGVPFKF+
Sbjct: 241 TLLEALATRTDDTPHLRLTTVVTTKPSGGTGTAASQKVMKEIGTRMEKFARLMGVPFKFN 300

Query: 301 TLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVI 360
            LYHSGDLS+LD+AKLDIKEDEALA+NC+GAL SVAA++NRRDFLI+SFRSLRPRIITVI
Sbjct: 301 ALYHSGDLSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVI 360

Query: 361 EEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVA 420
           EEEADLDVGVDGIEF+ GFQECLRWFRVYFETLDESF+RTSNERLMLERAAGRAIVDLVA
Sbjct: 361 EEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVA 420

Query: 421 CSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGI 480
           CSAAESVERRE+A+RWAQRLHG+GF P+ FSDEVCDDVRALLRRYKEGWAMTQSSDVAGI
Sbjct: 421 CSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGI 480

Query: 481 FLTWKEQPVVWASAWKP 493
           FLTWKEQPVVWASAW+P
Sbjct: 481 FLTWKEQPVVWASAWRP 490

[Close]

BLAST of Carg18551 vs. ExPASy TrEMBL
Match: A0A1S3B100 (protein SHORT-ROOT OS=Cucumis melo OX=3656 GN=LOC103484850 PE=3 SV=1)

HSP 1 Score: 873.2 bits (2255), Expect = 5.0e-250
Identity = 447/497 (89.94%), Postives = 474/497 (95.37%), Query Frame = 0


Query: 1   MDTLFRLVNLQS-EQSYNSSRSRTNSSSSRSSRQNQY-HYHQQEDEECYNVLMDEEDFSS 60
           MDTLFRLVNLQS +QSYNSSRS TNSSSSRSSRQNQY HYHQQEDEECYN+LMD+EDFSS
Sbjct: 1   MDTLFRLVNLQSDQQSYNSSRS-TNSSSSRSSRQNQYHHYHQQEDEECYNLLMDDEDFSS 60

Query: 61  SSNSRQYY--NPY-LPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILL 120
           SSNSRQYY  NPY  P+PSST  TTPT     P+DQFSF+SP+PDFNFEFSGRWAPDILL
Sbjct: 61  SSNSRQYYNNNPYHPPHPSST--TTPT----PPLDQFSFLSPSPDFNFEFSGRWAPDILL 120

Query: 121 ETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSS 180
           ETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALF+RMTDSGDRNYRAL+S
Sbjct: 121 ETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALAS 180

Query: 181 ASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWP 240
           ASEK+CSFESTRK+MLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWP
Sbjct: 181 ASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWP 240

Query: 241 TLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFH 300
           TLLEALATRTDDTPHLRLTTVV TKP  G+G AASQKVMKEIGTRMEKFARLMGVPFKF+
Sbjct: 241 TLLEALATRTDDTPHLRLTTVVTTKPSGGTGTAASQKVMKEIGTRMEKFARLMGVPFKFN 300

Query: 301 TLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVI 360
            LYHSGDLS+LD+AKLDIKEDEALA+NC+GAL SVAA++NRRDFLI+SFRSLRPRIITVI
Sbjct: 301 ALYHSGDLSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVI 360

Query: 361 EEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVA 420
           EEEADLDVGVDGIEF+ GFQECLRWFRVYFETLDESF+RTSNERLMLERAAGRAIVDLVA
Sbjct: 361 EEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVA 420

Query: 421 CSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGI 480
           CSAAESVERRE+A+RWAQRLHG+GF P+ FSDEVCDDVRALLRRYKEGWAMTQSSDVAGI
Sbjct: 421 CSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGI 480

Query: 481 FLTWKEQPVVWASAWKP 493
           FLTWKEQPVVWASAW+P
Sbjct: 481 FLTWKEQPVVWASAWRP 490

[Close]

BLAST of Carg18551 vs. ExPASy TrEMBL
Match: A0A0A0KGH6 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495620 PE=3 SV=1)

HSP 1 Score: 872.8 bits (2254), Expect = 6.5e-250
Identity = 446/497 (89.74%), Postives = 474/497 (95.37%), Query Frame = 0


Query: 1   MDTLFRLVNLQS-EQSYNSSRSRTNSSSSRSSRQNQY-HYHQQEDEECYNVLMDEEDFSS 60
           MDTLFRLVNLQS +QSYNSSRS TNSSSSRSSRQNQY HYHQQEDEECYN+LMD+EDFSS
Sbjct: 1   MDTLFRLVNLQSDQQSYNSSRS-TNSSSSRSSRQNQYHHYHQQEDEECYNLLMDDEDFSS 60

Query: 61  SSNSRQYY--NPY-LPNPSSTVCTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILL 120
           SSNSRQYY  NPY  P+PSST  TTPT     P+DQFSF+SP+PDFNFEFSGRWAPDILL
Sbjct: 61  SSNSRQYYNSNPYHPPHPSST--TTPT----PPLDQFSFLSPSPDFNFEFSGRWAPDILL 120

Query: 121 ETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSS 180
           ETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALF+RMTDSGDRNYRAL+S
Sbjct: 121 ETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALAS 180

Query: 181 ASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWP 240
           ASEK+CSFESTRK+MLKFQEVSPWTTFGHVSCNGALIEALEGESKLHI+DISNTYCTQWP
Sbjct: 181 ASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWP 240

Query: 241 TLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFH 300
           TLLEALATRTDDTPHLRLTTVV TKP  G+G AASQKVMKEIGTRMEKFARLMGVPFKF+
Sbjct: 241 TLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFN 300

Query: 301 TLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSVAAVDNRRDFLIASFRSLRPRIITVI 360
            LYHSGDLS+LD+AKLDIKEDEALA+NC+GAL SVAA++NRRDFLI+SFRSLRPRIITVI
Sbjct: 301 ALYHSGDLSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVI 360

Query: 361 EEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVA 420
           EEEADLDVGVDGIEF+ GFQECLRWFRVYFETLDESF+RTSNERLMLERAAGRAIVDLVA
Sbjct: 361 EEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVA 420

Query: 421 CSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGI 480
           CSAAESVERRE+A+RWAQRLHG+GF P+ FSDEVCDDVRALLRRYKEGWAMTQSSDVAGI
Sbjct: 421 CSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGI 480

Query: 481 FLTWKEQPVVWASAWKP 493
           FLTWKEQPVVWASAW+P
Sbjct: 481 FLTWKEQPVVWASAWRP 490

[Close]

BLAST of Carg18551 vs. TAIR 10
Match: AT4G37650.1 (GRAS family transcription factor )

HSP 1 Score: 587.0 bits (1512), Expect = 1.4e-167
Identity = 314/532 (59.02%), Postives = 392/532 (73.68%), Query Frame = 0


Query: 1   MDTLFRLVNLQSEQ------SYNSSRSRTNSSSSRSSRQNQYHYH-QQED--EECYNVLM 60
           MDTLFRLV+LQ +Q      +  SS SRT S+++  S Q  YHY+  Q D  EEC+N  M
Sbjct: 1   MDTLFRLVSLQQQQQSDSIITNQSSLSRT-STTTTGSPQTAYHYNFPQNDVVEECFNFFM 60

Query: 61  DEEDFSSSSNSRQYYNPYLPNPSSTVCTTPT----ATTPTPI------------------ 120
           DEED SSSS+   ++N   PN   +  TTPT    AT+ TP                   
Sbjct: 61  DEEDLSSSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSSGHH 120

Query: 121 ---DQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDT 180
                FS     P F+F  + +WA  +LLE ARA SD+++AR QQ++W LNELSSPYGDT
Sbjct: 121 NDPSAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDT 180

Query: 181 DQKLAAYFLQALFTRMTDSGDRNYRAL--SSASEKSCSFESTRKMMLKFQEVSPWTTFGH 240
           +QKLA+YFLQALF RMT SG+R YR +  ++A+EK+CSFESTRK +LKFQEVSPW TFGH
Sbjct: 181 EQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGH 240

Query: 241 VSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDG 300
           V+ NGA++EA++GE+K+HI+DIS+T+CTQWPTLLEALATR+DDTPHLRLTTVV+      
Sbjct: 241 VAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANK-FV 300

Query: 301 SGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCI 360
           +   AS ++MKEIG RMEKFARLMGVPFKF+ ++H GDLS+ DL +LD+K DE LA+NC+
Sbjct: 301 NDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCV 360

Query: 361 GALHSVAAVDNRRDFLIASFRSLRPRIITVIEEEADL---DVGVDGIEFLSGFQECLRWF 420
           GA+H +A+  + RD +I+SFR LRPRI+TV+EEEADL   + G    EFL GF ECLRWF
Sbjct: 361 GAMHGIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWF 420

Query: 421 RVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFS 480
           RV FE+ +ESF RTSNERLMLERAAGRAIVDLVAC  ++S ERRE+A +W++R+  SGF 
Sbjct: 421 RVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNSGFG 480

Query: 481 PLIFSDEVCDDVRALLRRYKEG-WAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
            + +SDEV DDVRALLRRYKEG W+M Q  D AGIFL W++QPVVWASAW+P
Sbjct: 481 AVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWRP 530

[Close]

BLAST of Carg18551 vs. TAIR 10
Match: AT2G04890.1 (SCARECROW-like 21 )

HSP 1 Score: 211.1 bits (536), Expect = 2.1e-54
Identity = 124/384 (32.29%), Postives = 206/384 (53.65%), Query Frame = 0


Query: 113 ILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRA 172
           +L+  A+A+S+ N    +  M  L  + S  G+  Q+L AY L+ L  R+  SG   Y++
Sbjct: 53  VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKS 112

Query: 173 LSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCT 232
           L S   +S  F S    +    EV P+  FG++S NGA+ EA++ E ++HIID      +
Sbjct: 113 LQSREPESYEFLS---YVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGS 172

Query: 233 QWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPF 292
           QW  L++A A R    P++R+T V     GDGS       V+  +  R+EK A+   VPF
Sbjct: 173 QWIALIQAFAARPGGAPNIRITGV-----GDGS-------VLVTVKKRLEKLAKKFDVPF 232

Query: 293 KFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSV----AAVDNRRDFLIASFRSLR 352
           +F+ +  S    ++++  LD+++ EAL VN    LH +     +++N RD L+   +SL 
Sbjct: 233 RFNAV--SRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLS 292

Query: 353 PRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLER-AAG 412
           P+++T++E+E + +       FL  F E L ++   FE++D    R   ER+ +E+    
Sbjct: 293 PKVVTLVEQECNTNTS----PFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMA 352

Query: 413 RAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMT 472
           R +V+++AC  AE +ER E   +W  R   +GF P   S  +   +RALLR Y  G+A+ 
Sbjct: 353 RDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIE 412

Query: 473 QSSDVAGIFLTWKEQPVVWASAWK 492
           +      ++L W ++ +V + AWK
Sbjct: 413 ERD--GALYLGWMDRILVSSCAWK 413

[Close]

BLAST of Carg18551 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 196.4 bits (498), Expect = 5.2e-50
Identity = 115/383 (30.03%), Postives = 206/383 (53.79%), Query Frame = 0


Query: 114 LLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRAL 173
           L+  A+A+S+ +      +M  L ++ S  G+  Q+L AY L+ L  ++  SG   Y+AL
Sbjct: 123 LVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKAL 182

Query: 174 SSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQ 233
           +   E + S E    M + + EV P+  FG++S NGA+ EA++ E+++HIID      +Q
Sbjct: 183 NRCPEPA-STELLSYMHILY-EVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQ 242

Query: 234 WPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFK 293
           W TL++A A R    P +R+T +      D +   A    +  +G R+ K A+   VPF+
Sbjct: 243 WVTLIQAFAARPGGPPRIRITGI-----DDMTSAYARGGGLSIVGNRLAKLAKQFNVPFE 302

Query: 294 FHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSV----AAVDNRRDFLIASFRSLRP 353
           F+++  S  +S++    L ++  EALAVN    LH +     + +N RD L+   +SL P
Sbjct: 303 FNSV--SVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSP 362

Query: 354 RIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLER-AAGR 413
           +++T++E+E++ +       F   F E + ++   FE++D +  R   +R+ +E+    R
Sbjct: 363 KVVTLVEQESNTNTAA----FFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLAR 422

Query: 414 AIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQ 473
            +V+++AC  A+ VER E   +W  R   +GF+P   S  V   +++LLR Y + + + +
Sbjct: 423 DVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEE 482

Query: 474 SSDVAGIFLTWKEQPVVWASAWK 492
                 ++L W  + +V + AWK
Sbjct: 483 RD--GALYLGWMHRDLVASCAWK 490

[Close]

BLAST of Carg18551 vs. TAIR 10
Match: AT5G48150.2 (GRAS family transcription factor )

HSP 1 Score: 196.4 bits (498), Expect = 5.2e-50
Identity = 115/383 (30.03%), Postives = 206/383 (53.79%), Query Frame = 0


Query: 114 LLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRAL 173
           L+  A+A+S+ +      +M  L ++ S  G+  Q+L AY L+ L  ++  SG   Y+AL
Sbjct: 123 LVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKAL 182

Query: 174 SSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQ 233
           +   E + S E    M + + EV P+  FG++S NGA+ EA++ E+++HIID      +Q
Sbjct: 183 NRCPEPA-STELLSYMHILY-EVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQ 242

Query: 234 WPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFK 293
           W TL++A A R    P +R+T +      D +   A    +  +G R+ K A+   VPF+
Sbjct: 243 WVTLIQAFAARPGGPPRIRITGI-----DDMTSAYARGGGLSIVGNRLAKLAKQFNVPFE 302

Query: 294 FHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALHSV----AAVDNRRDFLIASFRSLRP 353
           F+++  S  +S++    L ++  EALAVN    LH +     + +N RD L+   +SL P
Sbjct: 303 FNSV--SVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSP 362

Query: 354 RIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLER-AAGR 413
           +++T++E+E++ +       F   F E + ++   FE++D +  R   +R+ +E+    R
Sbjct: 363 KVVTLVEQESNTNTAA----FFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLAR 422

Query: 414 AIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQ 473
            +V+++AC  A+ VER E   +W  R   +GF+P   S  V   +++LLR Y + + + +
Sbjct: 423 DVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEE 482

Query: 474 SSDVAGIFLTWKEQPVVWASAWK 492
                 ++L W  + +V + AWK
Sbjct: 483 RD--GALYLGWMHRDLVASCAWK 490

[Close]

BLAST of Carg18551 vs. TAIR 10
Match: AT3G49950.1 (GRAS family transcription factor )

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-47
Identity = 125/414 (30.19%), Postives = 203/414 (49.03%), Query Frame = 0


Query: 94  FVSPAP-----DFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQ 153
           F SP P     D NF         +LL  A AI   ++A   Q++W+LN ++ P GD+ Q
Sbjct: 12  FPSPKPLRGCGDANF------MEQLLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQ 71

Query: 154 KLAAYFLQALFTRMTDSGDRNYRALSSASEKSCSFESTRKMMLKFQEVSPWTTFGHVSCN 213
           +L + FL+AL +R           +S   +       +   +  F +++PW  FG ++ N
Sbjct: 72  RLTSAFLRALLSRAVSKTPTLSSTISFLPQADELHRFSVVELAAFVDLTPWHRFGFIAAN 131

Query: 214 GALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVA 273
            A++ A+EG S +HI+D+S T+C Q PTL++A+A+R +  P L   TVV +       + 
Sbjct: 132 AAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFIN 191

Query: 274 ASQKVMKEIGTRMEKFARLMGVPFKF---HTLYHSGDLSDLDLAKL-DIKEDEALAVNCI 333
            S    +E+G+++  FA    +  +F    + Y  G  S L   ++     +EAL VNC 
Sbjct: 192 IS---YEELGSKLVNFATTRNITMEFTIVPSTYSDGFSSLLQQLRIYPSSFNEALVVNCH 251

Query: 334 GALHSV------AAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECL 393
             L  +      ++  + R   +   RSL PRI+T+IEE+ DL         ++  +   
Sbjct: 252 MMLRYIPEEPLTSSSSSLRTVFLKQLRSLNPRIVTLIEEDVDL----TSENLVNRLKSAF 311

Query: 394 RWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGS 453
            +F + F+T D   T  S +R   E      I ++VA   AE VER E+  RW +R+  +
Sbjct: 312 NYFWIPFDTTD---TFMSEQRRWYEAEISWKIENVVAKEGAERVERTETKRRWIERMREA 371

Query: 454 GFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP 493
            F  +   ++   DV+A+L  +  GW M +  D   + LTWK   VV+A+ W P
Sbjct: 372 EFGGVRVKEDAVADVKAMLEEHAVGWGMKKEDDDESLVLTWKGHSVVFATVWVP 409

The following BLAST results are available for this feature:

BLAST of Carg18551 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026937.1	3.0e-281	100.00	Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6594979.1	5.6e-280	99.59	Protein SHORT-ROOT, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023003798.1	8.1e-279	99.39	protein SHORT-ROOT-like [Cucurbita maxima] >XP_023517414.1 protein SHORT-ROOT-li...	[more]
XP_022962666.1	1.4e-278	99.39	protein SHORT-ROOT-like [Cucurbita moschata]	[more]
XP_038883581.1	6.7e-257	91.50	protein SHORT-ROOT-like [Benincasa hispida]	[more]

BLAST of Carg18551 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZF7	1.9e-166	59.02	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
Q75I13	1.1e-134	47.70	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]
A2YN56	2.6e-134	50.47	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
Q8H2X8	2.6e-134	50.47	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]
A2XIA8	2.6e-134	47.54	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]

BLAST of Carg18551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXN4	3.9e-279	99.39	protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111497273 PE=3 SV=1	[more]
A0A6J1HDV6	6.7e-279	99.39	protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111463088 PE=3 SV=1	[more]
A0A5A7T0T0	5.0e-250	89.94	Protein SHORT-ROOT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0...	[more]
A0A1S3B100	5.0e-250	89.94	protein SHORT-ROOT OS=Cucumis melo OX=3656 GN=LOC103484850 PE=3 SV=1	[more]
A0A0A0KGH6	6.5e-250	89.74	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G495620 PE=3 S...	[more]

BLAST of Carg18551 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37650.1	1.4e-167	59.02	GRAS family transcription factor	[more]
AT2G04890.1	2.1e-54	32.29	SCARECROW-like 21	[more]
AT5G48150.1	5.2e-50	30.03	GRAS family transcription factor	[more]
AT5G48150.2	5.2e-50	30.03	GRAS family transcription factor	[more]
AT3G49950.1	1.1e-47	30.19	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 113..491 e-value: 2.3E-103 score: 346.0
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 1..491
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 101..491 score: 73.588486
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35
IPR030019	Protein short-root	PANTHER	PTHR31636:SF9	PROTEIN SHORT-ROOT	coord: 1..491

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18551-RA	Carg18551-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008356	asymmetric cell division
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0048366	leaf development
biological_process	GO:0045930	negative regulation of mitotic cell cycle
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding