Carg18548 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18548
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor DIVARICATA-like
Location	Carg_Chr07: 2901866 .. 2902877 (+)
RNA-Seq Expression	Carg18548
Synteny	Carg18548

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCCCTTCTTCTTCCTTCGGCCTTCTCGACCATTATTGGAGCCCCACCACTTCAATTCCTTCTCCCACTCCCTGGACTCGCCACCAGGACAAGATTTTCGAGCACGCTCTCGTCATGGTGCCGGAGAATTCTCCCAACCGTTGGATGAAGATCGCCGGTCTTGTTCCTGGTAAATCAGCGGCCGAGGTTAGAGACCATTACGACGCCTTGGTCTCTGACGTACAGAAGATCGACTCTGGACGAGTTGAACTACCGAACTATGCCGATGAGTCGTTGTCGAGTTCGCCGGAGAGGGAATCGCCGTGTCAGCTGCCGGAGAAAGCGTCTGAGAGGAAGAAGGGGAAGCCCTGGACCAAAAAAGAACACCAGTAGGTTCATTTCCTATACATAAAACCTCCCCCAACATGCTTCATGTCAACGTAACTGTCGAAATTAAAGTCTTACGGCTATTTTAGAGAATGATCGTGGGTTTAGAATAAAAAAATGCTATTTACTTTGAGAAGCCCTTGACCAAAATATAGTACCATTGTGGAAAGTCATGTTCGTCTAACATAGTATCAAAATATATTTTGATTATAAACCTATGATCATTTCCTAAATTAACAAATGTGAGACTTTCATCCTCTAACATTCACTTTGTTGTACTAAAAAAAATTATAAAATTGGCAGGCTATTTTTATTGGGGCTGAAGAAATTTGGAAAGGGTGATTGGAGAAGTATTTCTAGAAACGTGGTGATTACGAGAACGCCGACCCAAGTAGCCAGTCATGCCCAGAAGTATTTTCTACGCCAAGAGTCGGCAAAGAAAGACCGGAAGAGATCCAGCATACATGACATCACCACCGTAGAAGGCAATTTAGTAACGGCGGTGGCTGCTGCCAGTCAAGGTCAATTGAGTATTTTTTCATTAACTCACTCGCCGTCGCCGTCATTCCCGCTGCCGCTGTCGCACCAATTTTCACCTGCAAGCTATTTTCCAAACCAGAGAAGCTTGCTAGATTACTAA

mRNA sequence

ATGGAAGCCCCTTCTTCTTCCTTCGGCCTTCTCGACCATTATTGGAGCCCCACCACTTCAATTCCTTCTCCCACTCCCTGGACTCGCCACCAGGACAAGATTTTCGAGCACGCTCTCGTCATGGTGCCGGAGAATTCTCCCAACCGTTGGATGAAGATCGCCGGTCTTGTTCCTGGTAAATCAGCGGCCGAGGTTAGAGACCATTACGACGCCTTGGTCTCTGACGTACAGAAGATCGACTCTGGACGAGTTGAACTACCGAACTATGCCGATGAGTCGTTGTCGAGTTCGCCGGAGAGGGAATCGCCGTGTCAGCTGCCGGAGAAAGCAACGCCGACCCAAGTAGCCAGTCATGCCCAGAAGTATTTTCTACGCCAAGAGTCGGCAAAGAAAGACCGGAAGAGATCCAGCATACATGACATCACCACCGTAGAAGGCAATTTAGTAACGGCGGTGGCTGCTGCCAGTCAAGGTCAATTGAGTATTTTTTCATTAACTCACTCGCCGTCGCCGTCATTCCCGCTGCCGCTGTCGCACCAATTTTCACCTGCAAGCTATTTTCCAAACCAGAGAAGCTTGCTAGATTACTAA

Coding sequence (CDS)

ATGGAAGCCCCTTCTTCTTCCTTCGGCCTTCTCGACCATTATTGGAGCCCCACCACTTCAATTCCTTCTCCCACTCCCTGGACTCGCCACCAGGACAAGATTTTCGAGCACGCTCTCGTCATGGTGCCGGAGAATTCTCCCAACCGTTGGATGAAGATCGCCGGTCTTGTTCCTGGTAAATCAGCGGCCGAGGTTAGAGACCATTACGACGCCTTGGTCTCTGACGTACAGAAGATCGACTCTGGACGAGTTGAACTACCGAACTATGCCGATGAGTCGTTGTCGAGTTCGCCGGAGAGGGAATCGCCGTGTCAGCTGCCGGAGAAAGCAACGCCGACCCAAGTAGCCAGTCATGCCCAGAAGTATTTTCTACGCCAAGAGTCGGCAAAGAAAGACCGGAAGAGATCCAGCATACATGACATCACCACCGTAGAAGGCAATTTAGTAACGGCGGTGGCTGCTGCCAGTCAAGGTCAATTGAGTATTTTTTCATTAACTCACTCGCCGTCGCCGTCATTCCCGCTGCCGCTGTCGCACCAATTTTCACCTGCAAGCTATTTTCCAAACCAGAGAAGCTTGCTAGATTACTAA

Protein sequence

MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKATPTQVASHAQKYFLRQESAKKDRKRSSIHDITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFSPASYFPNQRSLLDY

Homology

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BLAST of Carg18548 vs. NCBI nr
Match: KAG7026935.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393.3 bits (1009), Expect = 1.2e-105
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60
           MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK
Sbjct: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60

Query: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKATPTQVASHAQ 120
           SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKATPTQVASHAQ
Sbjct: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKATPTQVASHAQ 120

Query: 121 KYFLRQESAKKDRKRSSIHDITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQ 180
           KYFLRQESAKKDRKRSSIHDITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQ
Sbjct: 121 KYFLRQESAKKDRKRSSIHDITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQ 180

Query: 181 FSPASYFPNQRSLLDY 197
           FSPASYFPNQRSLLDY
Sbjct: 181 FSPASYFPNQRSLLDY 196

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BLAST of Carg18548 vs. NCBI nr
Match: XP_022963148.1 (transcription factor DIVARICATA-like [Cucurbita moschata])

HSP 1 Score: 370.9 bits (951), Expect = 6.6e-99
Identity = 194/236 (82.20%), Postives = 195/236 (82.63%), Query Frame = 0


Query: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60
           MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK
Sbjct: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60

Query: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA---------- 120
           SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA          
Sbjct: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKASERKKGKPWT 120

Query: 121 ------------------------------TPTQVASHAQKYFLRQESAKKDRKRSSIHD 180
                                         TPTQVASHAQKYFLRQESAKKDRKRSSIHD
Sbjct: 121 KKEHQLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKYFLRQESAKKDRKRSSIHD 180

Query: 181 ITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFSPASYFPNQRSLLDY 197
           ITTVEGNLVTAVAA SQGQLSIFSLTHSPSPSFPLPL+HQFSPASYFPNQRSLLDY
Sbjct: 181 ITTVEGNLVTAVAATSQGQLSIFSLTHSPSPSFPLPLTHQFSPASYFPNQRSLLDY 236

[Close]

BLAST of Carg18548 vs. NCBI nr
Match: XP_023518498.1 (transcription factor DIVARICATA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 194/236 (82.20%), Postives = 194/236 (82.20%), Query Frame = 0


Query: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60
           MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK
Sbjct: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60

Query: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA---------- 120
           SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA          
Sbjct: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKASERKKGKPWT 120

Query: 121 ------------------------------TPTQVASHAQKYFLRQESAKKDRKRSSIHD 180
                                         TPTQVASHAQKYFLRQESAKKDRKRSSIHD
Sbjct: 121 KKEHQLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKYFLRQESAKKDRKRSSIHD 180

Query: 181 ITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFSPASYFPNQRSLLDY 197
           ITTVEGNLVTAVAA SQGQLSIFSLTHSPSPSFPLPL HQFSPASYFPNQRSLLDY
Sbjct: 181 ITTVEGNLVTAVAATSQGQLSIFSLTHSPSPSFPLPLPHQFSPASYFPNQRSLLDY 236

[Close]

BLAST of Carg18548 vs. NCBI nr
Match: XP_023003417.1 (transcription factor DIVARICATA-like [Cucurbita maxima])

HSP 1 Score: 356.7 bits (914), Expect = 1.3e-94
Identity = 189/236 (80.08%), Postives = 190/236 (80.51%), Query Frame = 0


Query: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60
           MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK
Sbjct: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60

Query: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA---------- 120
           SAAEVRDHYDALVSDVQ IDSGRVELPNYADESL SSPERESP QLPEKA          
Sbjct: 61  SAAEVRDHYDALVSDVQNIDSGRVELPNYADESLLSSPERESPGQLPEKASERKKGKPWT 120

Query: 121 ------------------------------TPTQVASHAQKYFLRQESAKKDRKRSSIHD 180
                                         TPTQVASHAQKYFLRQESAKKDRKRSSIHD
Sbjct: 121 KKEHQLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKYFLRQESAKKDRKRSSIHD 180

Query: 181 ITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFSPASYFPNQRSLLDY 197
           ITTVE NLVTAVAA S+GQLSIFSLTHSPSPSFPLPL HQFSPASYFPNQRSLLDY
Sbjct: 181 ITTVECNLVTAVAATSEGQLSIFSLTHSPSPSFPLPLPHQFSPASYFPNQRSLLDY 236

[Close]

BLAST of Carg18548 vs. NCBI nr
Match: KAG6594977.1 (Adenylyl-sulfate kinase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298.1 bits (762), Expect = 5.5e-77
Identity = 166/222 (74.77%), Postives = 167/222 (75.23%), Query Frame = 0


Query: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60
           MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK
Sbjct: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60

Query: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA---------- 120
           SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA          
Sbjct: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKASERKKGKPWT 120

Query: 121 ------------------------------TPTQVASHAQKYFLRQESAKKDRKRSSIHD 180
                                         TPTQVASHAQKYFLRQESAKKDRKRSSIHD
Sbjct: 121 KKEHQLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKYFLRQESAKKDRKRSSIHD 180

Query: 181 ITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFS 183
           ITTVEGNLVTAVAA SQG   I   T S + S   PLS  FS
Sbjct: 181 ITTVEGNLVTAVAATSQGGCPIVYETTSATSS-DGPLSTLFS 221

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BLAST of Carg18548 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-18
Identity = 67/198 (33.84%), Postives = 88/198 (44.44%), Query Frame = 0


Query: 3   APSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSA 62
           APSS F     +   +    S T WT  ++K FE+AL +  EN+PNRW ++A  VPGK+ 
Sbjct: 5   APSSYFSSSSWFLEESR---STTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKTV 64

Query: 63  AEVRDHYDALVSDVQKIDSGRVELPNYADES----------------------------- 122
            +V   Y  L  DV  I++G V +P Y+  S                             
Sbjct: 65  GDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEWGSGHGFDGFKQSYGTGGRKSSSG 124

Query: 123 LSSSPERESPCQLPEK---------------------------ATPTQVASHAQKYFLRQ 145
             S  ER+      E+                            TPTQVASHAQKYF+RQ
Sbjct: 125 RPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQ 184

[Close]

BLAST of Carg18548 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-18
Identity = 67/189 (35.45%), Postives = 81/189 (42.86%), Query Frame = 0


Query: 27  WTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAAEVRDHYDALVSDVQKIDSGRVEL 86
           W+R  D  FE AL    + S  RW KIA  VPGKS  ++++HY+ LV DV +I+SG V L
Sbjct: 12  WSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVEDVTRIESGCVPL 71

Query: 87  PNY----------ADESLSSSPERESPCQLPEKA-------------------------- 146
           P Y           DE  SS     S      +A                          
Sbjct: 72  PAYGSPEGSNGHAGDEGASSKKGGNSHAGESNQAGKSKSDQERRKGIAWTEDEHRLFLLG 131

Query: 147 --------------------TPTQVASHAQKYFLRQESAKKDRKRSSIHDITTVEGNLVT 160
                               TPTQVASHAQKYF+R  S  KDR+RSSIHDIT+V    V+
Sbjct: 132 LDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNADVS 191

[Close]

BLAST of Carg18548 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 74/213 (34.74%), Postives = 91/213 (42.72%), Query Frame = 0


Query: 18  TTSIPSPTPWTRHQDKIFEHALVMVPENSP-------NRWM-KIAGLVPG-KSAAEVRDH 77
           TT+  +   WTR  DK FE+AL       P       + W   +A  VPG +SA EVR H
Sbjct: 9   TTTAAAAAAWTREDDKAFENALAACAAPPPADGGAPDDDWFAALAASVPGARSAEEVRRH 68

Query: 78  YDALVSDVQKIDSGRVELPNYADESLSSSP------------------ERE--------- 137
           Y+ALV DV  ID+GRV LP YA E  ++ P                  ER+         
Sbjct: 69  YEALVEDVAAIDAGRVPLPRYAGEESAAPPDGAGAAAAASKDGGHRRDERKGGGGGYDGG 128

Query: 138 SPCQLPEK--------------------------------------ATPTQVASHAQKYF 156
             C   E+                                       TPTQVASHAQKYF
Sbjct: 129 KSCSKAEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYF 188

[Close]

BLAST of Carg18548 vs. ExPASy Swiss-Prot
Match: Q8LH59 (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 74/213 (34.74%), Postives = 91/213 (42.72%), Query Frame = 0


Query: 18  TTSIPSPTPWTRHQDKIFEHALVMVPENSP-------NRWM-KIAGLVPG-KSAAEVRDH 77
           TT+  +   WTR  DK FE+AL       P       + W   +A  VPG +SA EVR H
Sbjct: 9   TTTAAAAAAWTREDDKAFENALAACAAPPPADGGAPDDDWFAALAASVPGARSAEEVRRH 68

Query: 78  YDALVSDVQKIDSGRVELPNYADESLSSSP------------------ERE--------- 137
           Y+ALV DV  ID+GRV LP YA E  ++ P                  ER+         
Sbjct: 69  YEALVEDVAAIDAGRVPLPRYAGEESAAPPDGAGAAAAASKDGGHRRDERKGGGGGYDGG 128

Query: 138 SPCQLPEK--------------------------------------ATPTQVASHAQKYF 156
             C   E+                                       TPTQVASHAQKYF
Sbjct: 129 KSCSKAEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYF 188

[Close]

BLAST of Carg18548 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.6e-13
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 18 TTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAAEVRDHYDALVSDVQ 77
          + S+ S   WTR ++K+FE AL    +++P+RW  +A  V GKSA EVR HY+ L+ DV 
Sbjct: 3  SNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVN 62

Query: 78 KIDSGRVELPNY 90
           I+SGR   PNY
Sbjct: 63 DIESGRYPHPNY 74

[Close]

BLAST of Carg18548 vs. ExPASy TrEMBL
Match: A0A6J1HGW8 (transcription factor DIVARICATA-like OS=Cucurbita moschata OX=3662 GN=LOC111463444 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.2e-99
Identity = 194/236 (82.20%), Postives = 195/236 (82.63%), Query Frame = 0


Query: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60
           MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK
Sbjct: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60

Query: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA---------- 120
           SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA          
Sbjct: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKASERKKGKPWT 120

Query: 121 ------------------------------TPTQVASHAQKYFLRQESAKKDRKRSSIHD 180
                                         TPTQVASHAQKYFLRQESAKKDRKRSSIHD
Sbjct: 121 KKEHQLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKYFLRQESAKKDRKRSSIHD 180

Query: 181 ITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFSPASYFPNQRSLLDY 197
           ITTVEGNLVTAVAA SQGQLSIFSLTHSPSPSFPLPL+HQFSPASYFPNQRSLLDY
Sbjct: 181 ITTVEGNLVTAVAATSQGQLSIFSLTHSPSPSFPLPLTHQFSPASYFPNQRSLLDY 236

[Close]

BLAST of Carg18548 vs. ExPASy TrEMBL
Match: A0A6J1KMG9 (transcription factor DIVARICATA-like OS=Cucurbita maxima OX=3661 GN=LOC111497033 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.3e-95
Identity = 189/236 (80.08%), Postives = 190/236 (80.51%), Query Frame = 0


Query: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60
           MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK
Sbjct: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60

Query: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADESLSSSPERESPCQLPEKA---------- 120
           SAAEVRDHYDALVSDVQ IDSGRVELPNYADESL SSPERESP QLPEKA          
Sbjct: 61  SAAEVRDHYDALVSDVQNIDSGRVELPNYADESLLSSPERESPGQLPEKASERKKGKPWT 120

Query: 121 ------------------------------TPTQVASHAQKYFLRQESAKKDRKRSSIHD 180
                                         TPTQVASHAQKYFLRQESAKKDRKRSSIHD
Sbjct: 121 KKEHQLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKYFLRQESAKKDRKRSSIHD 180

Query: 181 ITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFSPASYFPNQRSLLDY 197
           ITTVE NLVTAVAA S+GQLSIFSLTHSPSPSFPLPL HQFSPASYFPNQRSLLDY
Sbjct: 181 ITTVECNLVTAVAATSEGQLSIFSLTHSPSPSFPLPLPHQFSPASYFPNQRSLLDY 236

[Close]

BLAST of Carg18548 vs. ExPASy TrEMBL
Match: A0A6J1BVC4 (transcription factor DIVARICATA-like OS=Momordica charantia OX=3673 GN=LOC111005863 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.8e-57
Identity = 139/243 (57.20%), Postives = 156/243 (64.20%), Query Frame = 0


Query: 4   PSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAA 63
           PS SF + D YWSP T+  SP PWTRHQDKIFEHALVMVPENSPNRW++IAGL+PGKS A
Sbjct: 5   PSPSFRVSDDYWSPKTAPSSPAPWTRHQDKIFEHALVMVPENSPNRWLRIAGLIPGKSPA 64

Query: 64  EVRDHYDALVSDVQKIDSGRVELPNYA-DESLSSSPERESP----CQLPEKA-------- 123
           EV  HYDALVSD+  IDSGRVELP+YA D+S++S PE E+P     + P K+        
Sbjct: 65  EVSYHYDALVSDLLDIDSGRVELPSYAEDDSVASLPETEAPPPNLSEKPSKSRPNETERK 124

Query: 124 ------------------------------------TPTQVASHAQKYFLRQESAKKDRK 183
                                               TPTQVASHAQKYFLRQESAKKDRK
Sbjct: 125 KGKPWTKKEHQLFLLGLKKFGKGDWRSISRNVVISRTPTQVASHAQKYFLRQESAKKDRK 184

Query: 184 RSSIHDITTVEGNLVTAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFSPASYF-PNQRSL 197
           RSSIHDITTVEG+LV A AA    QLS       P P +PL L HQF+ ASYF P+ RSL
Sbjct: 185 RSSIHDITTVEGSLV-AAAATDHCQLSTVPTIIQPPPPWPL-LPHQFASASYFPPDHRSL 244

[Close]

BLAST of Carg18548 vs. ExPASy TrEMBL
Match: A0A0A0KJP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495660 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-56
Identity = 137/244 (56.15%), Postives = 156/244 (63.93%), Query Frame = 0


Query: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60
           ME  S SFGL      P  S+ SPTPWTRHQD +FEHALV+VP+NSP+RW+KIA LVPGK
Sbjct: 1   MEPHSPSFGLF-----PVASLSSPTPWTRHQDNLFEHALVLVPDNSPDRWIKIAALVPGK 60

Query: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADE-SLSSSPERE----SPCQLPEKA----- 120
           SAA+VR HYD LVSDV  IDSGRVELPNYAD+ +++ S ERE    SP  + EK      
Sbjct: 61  SAADVRYHYDVLVSDVLDIDSGRVELPNYADDLTVAKSSERERSPPSPRPVSEKTSTTER 120

Query: 121 -------------------------------------TPTQVASHAQKYFLRQESAKKDR 180
                                                TPTQVASHAQKYFLRQESAKKDR
Sbjct: 121 KKGKPWTKKEHQLFLLGLKKFGKGDWRSISRNAVITRTPTQVASHAQKYFLRQESAKKDR 180

Query: 181 KRSSIHDITTVEGNLV-TAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFSPASYFPNQRS 197
           KRSSIHDITTVEG+LV T+  A  Q Q SI S+T   S SFPL + HQF+ + YFP +RS
Sbjct: 181 KRSSIHDITTVEGSLVTTSTTAIGQSQPSILSVTQPLSSSFPLHMRHQFASSGYFPYRRS 239

[Close]

BLAST of Carg18548 vs. ExPASy TrEMBL
Match: A0A1S3B1M9 (transcription factor DIVARICATA-like OS=Cucumis melo OX=3656 GN=LOC103484855 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 8.3e-55
Identity = 134/237 (56.54%), Postives = 152/237 (64.14%), Query Frame = 0


Query: 1   MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGK 60
           MEA SSS GLL     P TS  SPTPWTRHQD +FE ALV+VP+NSP+RW+KIA LVPGK
Sbjct: 1   MEAHSSSVGLL-----PITSFSSPTPWTRHQDDLFERALVLVPDNSPDRWIKIAALVPGK 60

Query: 61  SAAEVRDHYDALVSDVQKIDSGRVELPNYADE-SLSSSPERES--PCQLPEKA------- 120
           SAA+VR HYD LVSDV  IDSGRVELPNYAD+ + + SPERE   P  + EKA       
Sbjct: 61  SAADVRYHYDVLVSDVLNIDSGRVELPNYADDLTAARSPEREKSPPHPISEKASSSERKK 120

Query: 121 -----------------------------------TPTQVASHAQKYFLRQESAKKDRKR 180
                                              TPTQVASHAQKYFLRQESAKKDRKR
Sbjct: 121 GKPWTKKEHQLFLLGLRKFGKGDWRSISRNAVITRTPTQVASHAQKYFLRQESAKKDRKR 180

Query: 181 SSIHDITTVEGNLV-TAVAAASQGQLSIFSLTHSPSPSFPLPLSHQFSPASYFPNQR 192
           SSIHDITTVEGNLV T+    +Q Q +IF +T   S SFPL + HQF+ + YFP +R
Sbjct: 181 SSIHDITTVEGNLVMTSTTVINQSQPNIFPVTQPLSSSFPLHMPHQFASSGYFPYRR 232

[Close]

BLAST of Carg18548 vs. TAIR 10
Match: AT5G04760.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-29
Identity = 75/166 (45.18%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 27  WTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAAEVRDHYDALVSDVQKIDSGRVEL 86
           WTR +DK+FE ALV+ PE SPNRW +IA  +  KSA EVR+HY+ LV DV +IDSGRV++
Sbjct: 6   WTRSEDKMFEQALVLFPEGSPNRWERIADQL-HKSAGEVREHYEVLVHDVFEIDSGRVDV 65

Query: 87  PNYADESLSSSPERESPCQLP--------------------------------------- 146
           P+Y D+S +++   +S  Q+                                        
Sbjct: 66  PDYMDDSAAAAAGWDSAGQISFGSKHGESERKRGTPWTENEHKLFLIGLKRYGKGDWRSI 125

Query: 147 -----EKATPTQVASHAQKYFLRQESAKKDRKRSSIHDITTVEGNL 149
                   TPTQVASHAQKYFLRQ S KK+RKRSSIHDITTV+  L
Sbjct: 126 SRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDATL 170

[Close]

BLAST of Carg18548 vs. TAIR 10
Match: AT3G11280.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-20
Identity = 61/169 (36.09%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 27  WTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAAEVRDHYDALVSDVQKIDSGRVEL 86
           WT+ ++K+FE AL +  E+SP+RW K+A ++PGK+  +V   Y  L  DV  I++GRV +
Sbjct: 33  WTKEENKMFERALAIYAEDSPDRWFKVASMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPI 92

Query: 87  PNYADES-----------------LSSSPERESPCQLPEK-------------------- 146
           P Y   S                   S  +R+      E+                    
Sbjct: 93  PGYPAASSPLGFDTDMCRKRPSGARGSDQDRKKGVPWTEEEHRRFLLGLLKYGKGDWRNI 152

Query: 147 -------ATPTQVASHAQKYFLRQESAKKDRKRSSIHDITTVEGNLVTA 152
                   TPTQVASHAQKY+ RQ S  KD++R SIHDITT  GNL+ A
Sbjct: 153 SRNFVVSKTPTQVASHAQKYYQRQLSGAKDKRRPSIHDITT--GNLLNA 199

[Close]

BLAST of Carg18548 vs. TAIR 10
Match: AT3G11280.2 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-20
Identity = 61/169 (36.09%), Postives = 83/169 (49.11%), Query Frame = 0


Query: 27  WTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAAEVRDHYDALVSDVQKIDSGRVEL 86
           WT+ ++K+FE AL +  E+SP+RW K+A ++PGK+  +V   Y  L  DV  I++GRV +
Sbjct: 33  WTKEENKMFERALAIYAEDSPDRWFKVASMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPI 92

Query: 87  PNYADES-----------------LSSSPERESPCQLPEK-------------------- 146
           P Y   S                   S  +R+      E+                    
Sbjct: 93  PGYPAASSPLGFDTDMCRKRPSGARGSDQDRKKGVPWTEEEHRRFLLGLLKYGKGDWRNI 152

Query: 147 -------ATPTQVASHAQKYFLRQESAKKDRKRSSIHDITTVEGNLVTA 152
                   TPTQVASHAQKY+ RQ S  KD++R SIHDITT  GNL+ A
Sbjct: 153 SRNFVVSKTPTQVASHAQKYYQRQLSGAKDKRRPSIHDITT--GNLLNA 199

[Close]

BLAST of Carg18548 vs. TAIR 10
Match: AT5G08520.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-19
Identity = 67/189 (35.45%), Postives = 81/189 (42.86%), Query Frame = 0


Query: 27  WTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAAEVRDHYDALVSDVQKIDSGRVEL 86
           W+R  D  FE AL    + S  RW KIA  VPGKS  ++++HY+ LV DV +I+SG V L
Sbjct: 12  WSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVEDVTRIESGCVPL 71

Query: 87  PNY----------ADESLSSSPERESPCQLPEKA-------------------------- 146
           P Y           DE  SS     S      +A                          
Sbjct: 72  PAYGSPEGSNGHAGDEGASSKKGGNSHAGESNQAGKSKSDQERRKGIAWTEDEHRLFLLG 131

Query: 147 --------------------TPTQVASHAQKYFLRQESAKKDRKRSSIHDITTVEGNLVT 160
                               TPTQVASHAQKYF+R  S  KDR+RSSIHDIT+V    V+
Sbjct: 132 LDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNADVS 191

[Close]

BLAST of Carg18548 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator )

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-18
Identity = 57/175 (32.57%), Postives = 81/175 (46.29%), Query Frame = 0


Query: 27  WTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAAEVRDHYDALVSDVQKIDSGRVEL 86
           WT  ++K FE+AL +  +N+P+RW K+A ++PGK+ ++V   Y+ L +DV  I++G + +
Sbjct: 34  WTAAENKAFENALAVYDDNTPDRWQKVAAVIPGKTVSDVIRQYNDLEADVSSIEAGLIPV 93

Query: 87  PNYAD----------------------------ESLSSSPERESPCQLP----------- 145
           P Y                                   SPE E    +P           
Sbjct: 94  PGYITSPPFTLDWAGGGGGCNGFKPGHQVCNKRSQAGRSPELERKKGVPWTEEEHKLFLM 153

The following BLAST results are available for this feature:

BLAST of Carg18548 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026935.1	1.2e-105	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022963148.1	6.6e-99	82.20	transcription factor DIVARICATA-like [Cucurbita moschata]	[more]
XP_023518498.1	1.1e-98	82.20	transcription factor DIVARICATA-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003417.1	1.3e-94	80.08	transcription factor DIVARICATA-like [Cucurbita maxima]	[more]
KAG6594977.1	5.5e-77	74.77	Adenylyl-sulfate kinase, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of Carg18548 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S9H7	3.5e-18	33.84	Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ...	[more]
Q9FNN6	3.5e-18	35.45	Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1	[more]
B8A9B2	3.3e-16	34.74	Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 ...	[more]
Q8LH59	3.3e-16	34.74	Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=...	[more]
Q6NNN0	7.6e-13	47.22	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of Carg18548 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGW8	3.2e-99	82.20	transcription factor DIVARICATA-like OS=Cucurbita moschata OX=3662 GN=LOC1114634...	[more]
A0A6J1KMG9	6.3e-95	80.08	transcription factor DIVARICATA-like OS=Cucurbita maxima OX=3661 GN=LOC111497033...	[more]
A0A6J1BVC4	1.8e-57	57.20	transcription factor DIVARICATA-like OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A0A0KJP9	1.2e-56	56.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495660 PE=4 SV=1	[more]
A0A1S3B1M9	8.3e-55	56.54	transcription factor DIVARICATA-like OS=Cucumis melo OX=3656 GN=LOC103484855 PE=...	[more]

BLAST of Carg18548 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04760.1	2.7e-29	45.18	Duplicated homeodomain-like superfamily protein	[more]
AT3G11280.1	2.9e-20	36.09	Duplicated homeodomain-like superfamily protein	[more]
AT3G11280.2	2.9e-20	36.09	Duplicated homeodomain-like superfamily protein	[more]
AT5G08520.1	2.5e-19	35.45	Duplicated homeodomain-like superfamily protein	[more]
AT5G58900.1	2.1e-18	32.57	Homeodomain-like transcriptional regulator	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 23..75 e-value: 2.7E-6 score: 36.9
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 26..73 score: 6.341778
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 26..69 e-value: 6.49119E-6 score: 39.8662
None	No IPR available	GENE3D	1.10.10.60		coord: 22..86 e-value: 4.6E-20 score: 73.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..112
None	No IPR available	PANTHER	PTHR44042:SF22	TRANSCRIPTION FACTOR DIVARICATA-LIKE ISOFORM X1	coord: 19..95 coord: 111..152
IPR043363	Transcription factor DIVARICATA-like	PANTHER	PTHR44042	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 111..152
IPR043363	Transcription factor DIVARICATA-like	PANTHER	PTHR44042	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 19..95
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 25..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18548-RA	Carg18548-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding