Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCACAAAAAACTGTATTCTAAAGGAAACGTTCCCTTTTCATGGGAGGAAAAGCCTGGGATTTCCAAGAAAATCTGCTTCCAAGATGTTCAACCTCTGCCCTTACACTCTGTTCATGAAGATTCTGAATTTGATGACGTTGGTAAGATTCCTCCGCCGCCGCCGTGTCGGGTGCAGCCATGCTCTCTTAGAAACGCCTCCACCAAGGGAAGCCGGTGGGAGGAGGACCCTTTTCTTGAGGCGTATAAGGAGTGTACCAAGAGTGTAAAAAAAGGGAAACTTGTGGCGAAGAAGAGTAAGTTGTTTGGGTTTCTTTGTAAGAGCTTTGATTCTTGTGAAATTAGAGATGCGAGTGTGTTCAAGCTTGGTCGAGATAGCATTCGTGTGCTTAGTTGGAAGTAG
mRNA sequence
ATGAGCCACAAAAAACTGTATTCTAAAGGAAACGTTCCCTTTTCATGGGAGGAAAAGCCTGGGATTTCCAAGAAAATCTGCTTCCAAGATGTTCAACCTCTGCCCTTACACTCTGTTCATGAAGATTCTGAATTTGATGACGTTGGTAAGATTCCTCCGCCGCCGCCGTGTCGGGTGCAGCCATGCTCTCTTAGAAACGCCTCCACCAAGGGAAGCCGGTGGGAGGAGGACCCTTTTCTTGAGGCGTATAAGGAGTGTACCAAGAGTGTAAAAAAAGGGAAACTTGTGGCGAAGAAGAGTAAGTTGTTTGGGTTTCTTTGTAAGAGCTTTGATTCTTGTGAAATTAGAGATGCGAGTGTGTTCAAGCTTGGTCGAGATAGCATTCGTGTGCTTAGTTGGAAGTAG
Coding sequence (CDS)
ATGAGCCACAAAAAACTGTATTCTAAAGGAAACGTTCCCTTTTCATGGGAGGAAAAGCCTGGGATTTCCAAGAAAATCTGCTTCCAAGATGTTCAACCTCTGCCCTTACACTCTGTTCATGAAGATTCTGAATTTGATGACGTTGGTAAGATTCCTCCGCCGCCGCCGTGTCGGGTGCAGCCATGCTCTCTTAGAAACGCCTCCACCAAGGGAAGCCGGTGGGAGGAGGACCCTTTTCTTGAGGCGTATAAGGAGTGTACCAAGAGTGTAAAAAAAGGGAAACTTGTGGCGAAGAAGAGTAAGTTGTTTGGGTTTCTTTGTAAGAGCTTTGATTCTTGTGAAATTAGAGATGCGAGTGTGTTCAAGCTTGGTCGAGATAGCATTCGTGTGCTTAGTTGGAAGTAG
Protein sequence
MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHSVHEDSEFDDVGKIPPPPPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCEIRDASVFKLGRDSIRVLSWK
Homology
BLAST of Carg18531 vs. NCBI nr
Match:
KAG6594957.1 (hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026918.1 hypothetical protein SDJN02_10925, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 286.2 bits (731), Expect = 1.5e-73
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHSVHEDSEFDDVGKIPPPPPCRVQ 60
MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHSVHEDSEFDDVGKIPPPPPCRVQ
Sbjct: 1 MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHSVHEDSEFDDVGKIPPPPPCRVQ 60
Query: 61 PCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCEIRDASV 120
PCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCEIRDASV
Sbjct: 61 PCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCEIRDASV 120
Query: 121 FKLGRDSIRVLSWK 135
FKLGRDSIRVLSWK
Sbjct: 121 FKLGRDSIRVLSWK 134
BLAST of Carg18531 vs. NCBI nr
Match:
OMP01746.1 (hypothetical protein COLO4_11612 [Corchorus olitorius])
HSP 1 Score: 107.8 bits (268), Expect = 7.2e-20
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLH-SVHED------SEFDDVG---- 60
MSH+K++S+GNVPFSWE+KPG+SK I D P+ +HE S D G
Sbjct: 1 MSHRKVHSQGNVPFSWEDKPGVSKVITHFDDHKCPIDIGLHEHDPPVILSPPSDGGGSSK 60
Query: 61 ------KIPPPPPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKS-VKKGKLVAK--- 120
K+PPPPPC +QP R+ S KG R W+EDPFL AYKECTK+ K GKL +
Sbjct: 61 VLVQEKKVPPPPPCSIQPLPKRSTSVKGLRWWQEDPFLAAYKECTKNGGKNGKLWSSDQG 120
Query: 121 ----------KSKLFGFLCKSFDSCEIRDASVFKL 124
+ K F CK ++C++RD ++ KL
Sbjct: 121 RKNNGNGSKARKKKITFSCK--NTCDVRDDNLVKL 153
BLAST of Carg18531 vs. NCBI nr
Match:
OMO56427.1 (hypothetical protein CCACVL1_26561 [Corchorus capsularis])
HSP 1 Score: 105.5 bits (262), Expect = 3.6e-19
Identity = 65/155 (41.94%), Postives = 87/155 (56.13%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLH-SVHED------SEFDDVG---- 60
MSH+K++S+GNVPFSWE+KPG+SK I D P+ +HE+ S D G
Sbjct: 1 MSHRKVHSQGNVPFSWEDKPGVSKVITHFDDHKCPIDIGLHENDPPAILSPPSDGGGSSK 60
Query: 61 ------KIPPPPPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKS-VKKGKLVAK--- 120
K+PPPPPC +Q R+ S KG R W+EDPFL AYKECTK+ K GKL +
Sbjct: 61 VLVQEKKVPPPPPCSIQLLPKRSTSVKGLRWWQEDPFLAAYKECTKNGGKNGKLWSSDQS 120
Query: 121 ----------KSKLFGFLCKSFDSCEIRDASVFKL 124
+ K F CK +SC++RD ++ +L
Sbjct: 121 RKNNGNGSKARKKKIAFSCK--NSCDVRDDNLVRL 153
BLAST of Carg18531 vs. NCBI nr
Match:
POO00665.1 (LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientale])
HSP 1 Score: 104.4 bits (259), Expect = 7.9e-19
Identity = 61/139 (43.88%), Postives = 79/139 (56.83%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISKKICFQD------VQPLPLHSVHEDSEFDDVGKIPPP 60
MSH+K+YS+G++PFSWE+KPGISK + V+ L L S I P
Sbjct: 1 MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSHQPTMTI-PL 60
Query: 61 PPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGK----------LVAKKSKLFG 120
PPC + R++STKG +W+EDPFL AYKECTK +KKGK KKS
Sbjct: 61 PPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTKVKKSLFTY 120
Query: 121 FLCKSFDSCEIRDASVFKL 124
F CKS +CE++D + KL
Sbjct: 121 FSCKS--TCEVKDENFVKL 136
BLAST of Carg18531 vs. NCBI nr
Match:
MBA0772117.1 (hypothetical protein [Gossypium trilobum])
HSP 1 Score: 103.6 bits (257), Expect = 1.4e-18
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
MSH K++S GN+PFSWEEKPG+SK K+ D Q P+ S VH+ K+PPP
Sbjct: 1 MSHTKVHSLGNIPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60
Query: 61 PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS---------KLFG 118
PP QP R+AS KG R W +DPFL AYKECTKS KL + S K
Sbjct: 61 PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKIS 120
BLAST of Carg18531 vs. ExPASy TrEMBL
Match:
A0A1R3K3U4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11612 PE=4 SV=1)
HSP 1 Score: 107.8 bits (268), Expect = 3.5e-20
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLH-SVHED------SEFDDVG---- 60
MSH+K++S+GNVPFSWE+KPG+SK I D P+ +HE S D G
Sbjct: 1 MSHRKVHSQGNVPFSWEDKPGVSKVITHFDDHKCPIDIGLHEHDPPVILSPPSDGGGSSK 60
Query: 61 ------KIPPPPPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKS-VKKGKLVAK--- 120
K+PPPPPC +QP R+ S KG R W+EDPFL AYKECTK+ K GKL +
Sbjct: 61 VLVQEKKVPPPPPCSIQPLPKRSTSVKGLRWWQEDPFLAAYKECTKNGGKNGKLWSSDQG 120
Query: 121 ----------KSKLFGFLCKSFDSCEIRDASVFKL 124
+ K F CK ++C++RD ++ KL
Sbjct: 121 RKNNGNGSKARKKKITFSCK--NTCDVRDDNLVKL 153
BLAST of Carg18531 vs. ExPASy TrEMBL
Match:
A0A1R3GEE0 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26561 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 65/155 (41.94%), Postives = 87/155 (56.13%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLH-SVHED------SEFDDVG---- 60
MSH+K++S+GNVPFSWE+KPG+SK I D P+ +HE+ S D G
Sbjct: 1 MSHRKVHSQGNVPFSWEDKPGVSKVITHFDDHKCPIDIGLHENDPPAILSPPSDGGGSSK 60
Query: 61 ------KIPPPPPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKS-VKKGKLVAK--- 120
K+PPPPPC +Q R+ S KG R W+EDPFL AYKECTK+ K GKL +
Sbjct: 61 VLVQEKKVPPPPPCSIQLLPKRSTSVKGLRWWQEDPFLAAYKECTKNGGKNGKLWSSDQS 120
Query: 121 ----------KSKLFGFLCKSFDSCEIRDASVFKL 124
+ K F CK +SC++RD ++ +L
Sbjct: 121 RKNNGNGSKARKKKIAFSCK--NSCDVRDDNLVRL 153
BLAST of Carg18531 vs. ExPASy TrEMBL
Match:
A0A2P5FS81 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_032960 PE=4 SV=1)
HSP 1 Score: 104.4 bits (259), Expect = 3.8e-19
Identity = 61/139 (43.88%), Postives = 79/139 (56.83%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISKKICFQD------VQPLPLHSVHEDSEFDDVGKIPPP 60
MSH+K+YS+G++PFSWE+KPGISK + V+ L L S I P
Sbjct: 1 MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSHQPTMTI-PL 60
Query: 61 PPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGK----------LVAKKSKLFG 120
PPC + R++STKG +W+EDPFL AYKECTK +KKGK KKS
Sbjct: 61 PPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTKVKKSLFTY 120
Query: 121 FLCKSFDSCEIRDASVFKL 124
F CKS +CE++D + KL
Sbjct: 121 FSCKS--TCEVKDENFVKL 136
BLAST of Carg18531 vs. ExPASy TrEMBL
Match:
A0A7J9EGH2 (Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_007553 PE=4 SV=1)
HSP 1 Score: 103.6 bits (257), Expect = 6.5e-19
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
MSH K++S GN+PFSWEEKPG+SK K+ D Q P+ S VH+ K+PPP
Sbjct: 1 MSHTKVHSLGNIPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60
Query: 61 PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS---------KLFG 118
PP QP R+AS KG R W +DPFL AYKECTKS KL + S K
Sbjct: 61 PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKIS 120
BLAST of Carg18531 vs. ExPASy TrEMBL
Match:
A0A7J8S2N4 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_006048 PE=4 SV=1)
HSP 1 Score: 103.6 bits (257), Expect = 6.5e-19
Identity = 64/134 (47.76%), Postives = 76/134 (56.72%), Query Frame = 0
Query: 1 MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
MSH K++S GNVPFSWEEKPG+SK K+ D Q P+ S VH+ K+PPP
Sbjct: 1 MSHTKVHSLGNVPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60
Query: 61 PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS----------KLF 118
PP QP R+AS KG R W +DPFL AYKECTKS KL + S K
Sbjct: 61 PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKKI 120
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6594957.1 | 1.5e-73 | 100.00 | hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
OMP01746.1 | 7.2e-20 | 42.58 | hypothetical protein COLO4_11612 [Corchorus olitorius] | [more] |
OMO56427.1 | 3.6e-19 | 41.94 | hypothetical protein CCACVL1_26561 [Corchorus capsularis] | [more] |
POO00665.1 | 7.9e-19 | 43.88 | LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientale] | [more] |
MBA0772117.1 | 1.4e-18 | 47.37 | hypothetical protein [Gossypium trilobum] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1R3K3U4 | 3.5e-20 | 42.58 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11612 PE=4 SV=1 | [more] |
A0A1R3GEE0 | 1.7e-19 | 41.94 | Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26561 PE=4 ... | [more] |
A0A2P5FS81 | 3.8e-19 | 43.88 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_032960 PE=4 SV... | [more] |
A0A7J9EGH2 | 6.5e-19 | 47.37 | Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_00755... | [more] |
A0A7J8S2N4 | 6.5e-19 | 47.76 | Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_006048 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |