Carg18531 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg18531
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 2834638 .. 2835042 (+)
RNA-Seq ExpressionCarg18531
SyntenyCarg18531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCACAAAAAACTGTATTCTAAAGGAAACGTTCCCTTTTCATGGGAGGAAAAGCCTGGGATTTCCAAGAAAATCTGCTTCCAAGATGTTCAACCTCTGCCCTTACACTCTGTTCATGAAGATTCTGAATTTGATGACGTTGGTAAGATTCCTCCGCCGCCGCCGTGTCGGGTGCAGCCATGCTCTCTTAGAAACGCCTCCACCAAGGGAAGCCGGTGGGAGGAGGACCCTTTTCTTGAGGCGTATAAGGAGTGTACCAAGAGTGTAAAAAAAGGGAAACTTGTGGCGAAGAAGAGTAAGTTGTTTGGGTTTCTTTGTAAGAGCTTTGATTCTTGTGAAATTAGAGATGCGAGTGTGTTCAAGCTTGGTCGAGATAGCATTCGTGTGCTTAGTTGGAAGTAG

mRNA sequence

ATGAGCCACAAAAAACTGTATTCTAAAGGAAACGTTCCCTTTTCATGGGAGGAAAAGCCTGGGATTTCCAAGAAAATCTGCTTCCAAGATGTTCAACCTCTGCCCTTACACTCTGTTCATGAAGATTCTGAATTTGATGACGTTGGTAAGATTCCTCCGCCGCCGCCGTGTCGGGTGCAGCCATGCTCTCTTAGAAACGCCTCCACCAAGGGAAGCCGGTGGGAGGAGGACCCTTTTCTTGAGGCGTATAAGGAGTGTACCAAGAGTGTAAAAAAAGGGAAACTTGTGGCGAAGAAGAGTAAGTTGTTTGGGTTTCTTTGTAAGAGCTTTGATTCTTGTGAAATTAGAGATGCGAGTGTGTTCAAGCTTGGTCGAGATAGCATTCGTGTGCTTAGTTGGAAGTAG

Coding sequence (CDS)

ATGAGCCACAAAAAACTGTATTCTAAAGGAAACGTTCCCTTTTCATGGGAGGAAAAGCCTGGGATTTCCAAGAAAATCTGCTTCCAAGATGTTCAACCTCTGCCCTTACACTCTGTTCATGAAGATTCTGAATTTGATGACGTTGGTAAGATTCCTCCGCCGCCGCCGTGTCGGGTGCAGCCATGCTCTCTTAGAAACGCCTCCACCAAGGGAAGCCGGTGGGAGGAGGACCCTTTTCTTGAGGCGTATAAGGAGTGTACCAAGAGTGTAAAAAAAGGGAAACTTGTGGCGAAGAAGAGTAAGTTGTTTGGGTTTCTTTGTAAGAGCTTTGATTCTTGTGAAATTAGAGATGCGAGTGTGTTCAAGCTTGGTCGAGATAGCATTCGTGTGCTTAGTTGGAAGTAG

Protein sequence

MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHSVHEDSEFDDVGKIPPPPPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCEIRDASVFKLGRDSIRVLSWK
Homology
BLAST of Carg18531 vs. NCBI nr
Match: KAG6594957.1 (hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026918.1 hypothetical protein SDJN02_10925, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.2 bits (731), Expect = 1.5e-73
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHSVHEDSEFDDVGKIPPPPPCRVQ 60
           MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHSVHEDSEFDDVGKIPPPPPCRVQ
Sbjct: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHSVHEDSEFDDVGKIPPPPPCRVQ 60

Query: 61  PCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCEIRDASV 120
           PCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCEIRDASV
Sbjct: 61  PCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCEIRDASV 120

Query: 121 FKLGRDSIRVLSWK 135
           FKLGRDSIRVLSWK
Sbjct: 121 FKLGRDSIRVLSWK 134

BLAST of Carg18531 vs. NCBI nr
Match: OMP01746.1 (hypothetical protein COLO4_11612 [Corchorus olitorius])

HSP 1 Score: 107.8 bits (268), Expect = 7.2e-20
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLH-SVHED------SEFDDVG---- 60
           MSH+K++S+GNVPFSWE+KPG+SK I   D    P+   +HE       S   D G    
Sbjct: 1   MSHRKVHSQGNVPFSWEDKPGVSKVITHFDDHKCPIDIGLHEHDPPVILSPPSDGGGSSK 60

Query: 61  ------KIPPPPPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKS-VKKGKLVAK--- 120
                 K+PPPPPC +QP   R+ S KG R W+EDPFL AYKECTK+  K GKL +    
Sbjct: 61  VLVQEKKVPPPPPCSIQPLPKRSTSVKGLRWWQEDPFLAAYKECTKNGGKNGKLWSSDQG 120

Query: 121 ----------KSKLFGFLCKSFDSCEIRDASVFKL 124
                     + K   F CK  ++C++RD ++ KL
Sbjct: 121 RKNNGNGSKARKKKITFSCK--NTCDVRDDNLVKL 153

BLAST of Carg18531 vs. NCBI nr
Match: OMO56427.1 (hypothetical protein CCACVL1_26561 [Corchorus capsularis])

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-19
Identity = 65/155 (41.94%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLH-SVHED------SEFDDVG---- 60
           MSH+K++S+GNVPFSWE+KPG+SK I   D    P+   +HE+      S   D G    
Sbjct: 1   MSHRKVHSQGNVPFSWEDKPGVSKVITHFDDHKCPIDIGLHENDPPAILSPPSDGGGSSK 60

Query: 61  ------KIPPPPPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKS-VKKGKLVAK--- 120
                 K+PPPPPC +Q    R+ S KG R W+EDPFL AYKECTK+  K GKL +    
Sbjct: 61  VLVQEKKVPPPPPCSIQLLPKRSTSVKGLRWWQEDPFLAAYKECTKNGGKNGKLWSSDQS 120

Query: 121 ----------KSKLFGFLCKSFDSCEIRDASVFKL 124
                     + K   F CK  +SC++RD ++ +L
Sbjct: 121 RKNNGNGSKARKKKIAFSCK--NSCDVRDDNLVRL 153

BLAST of Carg18531 vs. NCBI nr
Match: POO00665.1 (LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientale])

HSP 1 Score: 104.4 bits (259), Expect = 7.9e-19
Identity = 61/139 (43.88%), Postives = 79/139 (56.83%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQD------VQPLPLHSVHEDSEFDDVGKIPPP 60
           MSH+K+YS+G++PFSWE+KPGISK     +      V+ L L S            I P 
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSHQPTMTI-PL 60

Query: 61  PPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGK----------LVAKKSKLFG 120
           PPC +     R++STKG +W+EDPFL AYKECTK +KKGK             KKS    
Sbjct: 61  PPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTKVKKSLFTY 120

Query: 121 FLCKSFDSCEIRDASVFKL 124
           F CKS  +CE++D +  KL
Sbjct: 121 FSCKS--TCEVKDENFVKL 136

BLAST of Carg18531 vs. NCBI nr
Match: MBA0772117.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-18
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
           MSH K++S GN+PFSWEEKPG+SK  K+   D Q  P+ S    VH+        K+PPP
Sbjct: 1   MSHTKVHSLGNIPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60

Query: 61  PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS---------KLFG 118
           PP   QP   R+AS KG R W +DPFL AYKECTKS    KL +  S         K   
Sbjct: 61  PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKIS 120

BLAST of Carg18531 vs. ExPASy TrEMBL
Match: A0A1R3K3U4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11612 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.5e-20
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLH-SVHED------SEFDDVG---- 60
           MSH+K++S+GNVPFSWE+KPG+SK I   D    P+   +HE       S   D G    
Sbjct: 1   MSHRKVHSQGNVPFSWEDKPGVSKVITHFDDHKCPIDIGLHEHDPPVILSPPSDGGGSSK 60

Query: 61  ------KIPPPPPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKS-VKKGKLVAK--- 120
                 K+PPPPPC +QP   R+ S KG R W+EDPFL AYKECTK+  K GKL +    
Sbjct: 61  VLVQEKKVPPPPPCSIQPLPKRSTSVKGLRWWQEDPFLAAYKECTKNGGKNGKLWSSDQG 120

Query: 121 ----------KSKLFGFLCKSFDSCEIRDASVFKL 124
                     + K   F CK  ++C++RD ++ KL
Sbjct: 121 RKNNGNGSKARKKKITFSCK--NTCDVRDDNLVKL 153

BLAST of Carg18531 vs. ExPASy TrEMBL
Match: A0A1R3GEE0 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26561 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 65/155 (41.94%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLH-SVHED------SEFDDVG---- 60
           MSH+K++S+GNVPFSWE+KPG+SK I   D    P+   +HE+      S   D G    
Sbjct: 1   MSHRKVHSQGNVPFSWEDKPGVSKVITHFDDHKCPIDIGLHENDPPAILSPPSDGGGSSK 60

Query: 61  ------KIPPPPPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKS-VKKGKLVAK--- 120
                 K+PPPPPC +Q    R+ S KG R W+EDPFL AYKECTK+  K GKL +    
Sbjct: 61  VLVQEKKVPPPPPCSIQLLPKRSTSVKGLRWWQEDPFLAAYKECTKNGGKNGKLWSSDQS 120

Query: 121 ----------KSKLFGFLCKSFDSCEIRDASVFKL 124
                     + K   F CK  +SC++RD ++ +L
Sbjct: 121 RKNNGNGSKARKKKIAFSCK--NSCDVRDDNLVRL 153

BLAST of Carg18531 vs. ExPASy TrEMBL
Match: A0A2P5FS81 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_032960 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.8e-19
Identity = 61/139 (43.88%), Postives = 79/139 (56.83%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQD------VQPLPLHSVHEDSEFDDVGKIPPP 60
           MSH+K+YS+G++PFSWE+KPGISK     +      V+ L L S            I P 
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSHQPTMTI-PL 60

Query: 61  PPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGK----------LVAKKSKLFG 120
           PPC +     R++STKG +W+EDPFL AYKECTK +KKGK             KKS    
Sbjct: 61  PPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTKVKKSLFTY 120

Query: 121 FLCKSFDSCEIRDASVFKL 124
           F CKS  +CE++D +  KL
Sbjct: 121 FSCKS--TCEVKDENFVKL 136

BLAST of Carg18531 vs. ExPASy TrEMBL
Match: A0A7J9EGH2 (Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_007553 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-19
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
           MSH K++S GN+PFSWEEKPG+SK  K+   D Q  P+ S    VH+        K+PPP
Sbjct: 1   MSHTKVHSLGNIPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60

Query: 61  PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS---------KLFG 118
           PP   QP   R+AS KG R W +DPFL AYKECTKS    KL +  S         K   
Sbjct: 61  PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKIS 120

BLAST of Carg18531 vs. ExPASy TrEMBL
Match: A0A7J8S2N4 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_006048 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-19
Identity = 64/134 (47.76%), Postives = 76/134 (56.72%), Query Frame = 0

Query: 1   MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
           MSH K++S GNVPFSWEEKPG+SK  K+   D Q  P+ S    VH+        K+PPP
Sbjct: 1   MSHTKVHSLGNVPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60

Query: 61  PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS----------KLF 118
           PP   QP   R+AS KG R W +DPFL AYKECTKS    KL +  S          K  
Sbjct: 61  PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKKI 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6594957.11.5e-73100.00hypothetical protein SDJN03_11510, partial [Cucurbita argyrosperma subsp. sorori... [more]
OMP01746.17.2e-2042.58hypothetical protein COLO4_11612 [Corchorus olitorius][more]
OMO56427.13.6e-1941.94hypothetical protein CCACVL1_26561 [Corchorus capsularis][more]
POO00665.17.9e-1943.88LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientale][more]
MBA0772117.11.4e-1847.37hypothetical protein [Gossypium trilobum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1R3K3U43.5e-2042.58Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_11612 PE=4 SV=1[more]
A0A1R3GEE01.7e-1941.94Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26561 PE=4 ... [more]
A0A2P5FS813.8e-1943.88Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_032960 PE=4 SV... [more]
A0A7J9EGH26.5e-1947.37Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_00755... [more]
A0A7J8S2N46.5e-1947.76Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_006048 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33696T22J18.15-RELATEDcoord: 1..124
NoneNo IPR availablePANTHERPTHR33696:SF3SUBFAMILY NOT NAMEDcoord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18531-RACarg18531-RAmRNA