Carg18526 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18526
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr07: 2804707 .. 2806121 (-)
RNA-Seq Expression	Carg18526
Synteny	Carg18526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATGCCATTGATCGGTCTATTCCATTATCGAGGAAACTACATATGGGACCTTGTGTTCTAAAACTTTCCACAAGGAGAAAGGTTAAATCTTCTACATGCTTATTGCAGCTTGCAGCTTCACTGGGAAACTGGAAACTGATATTTTACATCTATCCGCGGAACGGTAAGGTATGAACTTTCAAACGATCATTTCCAAAGTAATAGTTCACTCCTTTTAACGTTTAGGAAAGGATCTCTAAGTACGATAATCTGTCTCATCGTAGATTTCCTCCTGCAGTGAACAAAGATTAAGGGTAATCAAGCTTTGCAGTATTGATAGGAAGATGAAGCTGTAGATAGAGGATATGCCTGCTATACCTGTAAAAGCTCCTCAATGACATCTTCAAGTGTTATGATGCCAATTGCTTCCCCCTCTTCAGTAAGCTTGGCCAGCATGTCATCTGCAATATGCAGGACCTCTGAGTCGAAGTCCTTGGACCATTTCTTACTTCCAGAAAACTTCCGATGGTAATTACTACGATCCACAAATGTGTTTAGTCTTTTCAGAGATCTCTTGCTCTTTAAACTCTTTTCCTGTGGATGATTTTCACCATCGATGTCCACTTTCACATCTCTTGCTGCATGTGCATTTGTGTTATATGTATCATCGACCAAGTTAAATAGAAATGAAGAAGGGTAAATGCTTACCCTCAAGTTGATTCCCGCTAATGGGCTTCTCTGGATTTTCCTTTTCTCTTACTACCACGGCCATATGACTGTGACCTTTCTGGAAATCATTTAGTATGTCGTACAGTGGCATTGTTTCTGAGACCCTGATAGACAAGTTTGGATTCTTAGTGCAAATGGAAGTTGTTCTTTTCCTAACATGCAATATACAGAATAATTAGGAGCATAAAGTACCTTGGACATTTCCGAATGGGGAAGTTCTTAATTGGTACCCCATCTGGTGAATGCCCAGTTATTAAATTCTTCACCTACGATTTAAATATACTGATATCAGGTTAATGTATGTTATTGTAATTTTGTTAACGTTTGCATGGATAAACATTACCAACACGAGGCCAATGATATTTGCAGGGTGTTCATAAAACACAGGCACTCTGCTATGCCCCTTCTCCAGAATTAACTTGATCAAGTTGCTGCATAGTTTTCATAATAAGCATATTTATCAGGATGGAGGAGAGTGGAAGAATGAAGTTGGTGTCTGCATCAAACCTGTCGAGATTAGCATTAATATCGATCGCAAAAGTTTCAGAAAGGGGAGTCATGACGTCTCTTGCGACCTTCTCGGTGAGTTCCAGTGCTCCTCCAATTATGGTTGTTTCATCTCGTGTCAGCTCTCCTCCTTTTCCAGCCTGCACTTCTAAGAAACCCAACTCAGCCACACAAGAGAGGCAGATAGTTGCTCGTGTT

mRNA sequence

TTGATGCCATTGATCGGTCTATTCCATTATCGAGGAAACTACATATGGGACCTTGTGTTCTAAAACTTTCCACAAGGAGAAAGCTTGCAGCTTCACTGGGAAACTGGAAACTGATATTTTACATCTATCCGCGGAACGGTAAGGAAGATGAAGCTGTAGATAGAGGATATGCCTGCTATACCTGTAAAAGCTCCTCAATGACATCTTCAAGTGTTATGATGCCAATTGCTTCCCCCTCTTCAGTAAGCTTGGCCAGCATGTCATCTGCAATATGCAGGACCTCTGAGTCGAAGTCCTTGGACCATTTCTTACTTCCAGAAAACTTCCGATGGATGGAGGAGAGTGGAAGAATGAAGTTGGTGTCTGCATCAAACCTGTCGAGATTAGCATTAATATCGATCGCAAAAGTTTCAGAAAGGGGAGTCATGACGTCTCTTGCGACCTTCTCGGTGAGTTCCAGTGCTCCTCCAATTATGGTTGTTTCATCTCGTGTCAGCTCTCCTCCTTTTCCAGCCTGCACTTCTAAGAAACCCAACTCAGCCACACAAGAGAGGCAGATAGTTGCTCGTGTT

Coding sequence (CDS)

ATGGGACCTTGTGTTCTAAAACTTTCCACAAGGAGAAAGCTTGCAGCTTCACTGGGAAACTGGAAACTGATATTTTACATCTATCCGCGGAACGGTAAGGAAGATGAAGCTGTAGATAGAGGATATGCCTGCTATACCTGTAAAAGCTCCTCAATGACATCTTCAAGTGTTATGATGCCAATTGCTTCCCCCTCTTCAGTAAGCTTGGCCAGCATGTCATCTGCAATATGCAGGACCTCTGAGTCGAAGTCCTTGGACCATTTCTTACTTCCAGAAAACTTCCGATGGATGGAGGAGAGTGGAAGAATGAAGTTGGTGTCTGCATCAAACCTGTCGAGATTAGCATTAATATCGATCGCAAAAGTTTCAGAAAGGGGAGTCATGACGTCTCTTGCGACCTTCTCGGTGAGTTCCAGTGCTCCTCCAATTATGGTTGTTTCATCTCGTGTCAGCTCTCCTCCTTTTCCAGCCTGCACTTCTAAGAAACCCAACTCAGCCACACAAGAGAGGCAGATAGTTGCTCGTGTT

Protein sequence

MGPCVLKLSTRRKLAASLGNWKLIFYIYPRNGKEDEAVDRGYACYTCKSSSMTSSSVMMPIASPSSVSLASMSSAICRTSESKSLDHFLLPENFRWMEESGRMKLVSASNLSRLALISIAKVSERGVMTSLATFSVSSSAPPIMVVSSRVSSPPFPACTSKKPNSATQERQIVARV

Homology

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BLAST of Carg18526 vs. NCBI nr
Match: KAG7026913.1 (hypothetical protein SDJN02_10920, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.5 bits (846), Expect = 8.9e-87
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MGPCVLKLSTRRKLAASLGNWKLIFYIYPRNGKEDEAVDRGYACYTCKSSSMTSSSVMMP 60
           MGPCVLKLSTRRKLAASLGNWKLIFYIYPRNGKEDEAVDRGYACYTCKSSSMTSSSVMMP
Sbjct: 1   MGPCVLKLSTRRKLAASLGNWKLIFYIYPRNGKEDEAVDRGYACYTCKSSSMTSSSVMMP 60

Query: 61  IASPSSVSLASMSSAICRTSESKSLDHFLLPENFRWMEESGRMKLVSASNLSRLALISIA 120
           IASPSSVSLASMSSAICRTSESKSLDHFLLPENFRWMEESGRMKLVSASNLSRLALISIA
Sbjct: 61  IASPSSVSLASMSSAICRTSESKSLDHFLLPENFRWMEESGRMKLVSASNLSRLALISIA 120

Query: 121 KVSERGVMTSLATFSVSSSAPPIMVVSSRVSSPPFPACTSKKPNSATQERQIVARV 177
           KVSERGVMTSLATFSVSSSAPPIMVVSSRVSSPPFPACTSKKPNSATQERQIVARV
Sbjct: 121 KVSERGVMTSLATFSVSSSAPPIMVVSSRVSSPPFPACTSKKPNSATQERQIVARV 176

The following BLAST results are available for this feature:

BLAST of Carg18526 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026913.1	8.9e-87	100.00	hypothetical protein SDJN02_10920, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg18526 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18526 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg18526 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18526-RA	Carg18526-RA	mRNA