Carg18518 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18518
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Epidermal patterning factor-like protein
Location	Carg_Chr07: 2750424 .. 2751994 (-)
RNA-Seq Expression	Carg18518
Synteny	Carg18518

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAGAAATGAAAGAGAAAGAGAAAATAAAAGGGAAACGAAAACGAAATCCCACTCGTACACAGCTGCCATTGCGCTGCTCACATCTGCTAATTTGTTCTGTTTAACTCTGTTTTTTAGGCTCTTCTTTCGAGTTCTGAGGAGCTCTGCAATTTTCGGTACTCTCTGCAATCTTTTTCCCTTTTCTTTTTCTTTTTGTCTTCCATGTTCCATCATCTCAAATATCATTCTCAGACTAAGATAGATTCAGAGGGAATTCATTTTATATGATATGCACGTACGAGCAGTATAGAGTGAAAAATCAGAAGCTAATCTCACTTTTCTCTCCCCATCTCTCTGTTAGAACGAAAAGAAAAATGGGGTGTGAGTGCAACAACAATGGCGTCATTGGCCGCAGTAGAATCTTGTGTGCGACTCTTTCTTTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTCATGGCTGAAGGTAAATGGGTATCTCTTGAAACTTCAAAAAAGAGTCCGAAACCAAAATTCTTGAACTGAATTCTTGTGAATCGTTTTCCTTTGCAGGCAGATCTATTCCAAAGAGTGGCAAGGTCAGTCCACAAGGCCAGCCCTTTCCTCTCTTTTTGATTCATTTACTGTTTCTGAAAGCTTGATTGTTAAGAAGAAATTTGGTTTTTGTTTTGGTGAATTGGGATAGACAGTGAGTGAAGATAAAGTGGTATTACGAGGACAAATTGGGTCAAGGCCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGCACACTGTGAGGCCATTCAAGTTCCTGCAAACCCACAAAAGTCTTCAACATTGAAGAACATAGCTTATGCTAGAGATGAAGCCTCAAATTACAAACCCATGAGCTGGAAATGCAAATGTGGGAGCTTAATCTTCAACCCTTAAGTAGATGATCATCATCAACTCTGTAAATTAGTGATTATATGATTGTTTCTTTCACTTAACACTCTCTAGATATCTCTCTCTTTTGTTCTGACACTCTTGAGGGTTGAAAGCAGGCATTTGATGAAGAGAATTATGAACTGGGTTTCTTTTCTAACATGCAACTACTTCGGATTCCTTCCATATCAGTTTCATCTTGAAACACTTAAATGGGATAACTCATGAACAGTTTGATTAAGTATAGAAAAGTGGGTGTAAATTGAATGGGAGAGAGAGAGTGAATTTGATTCATTTGAAGGGTGGTGATTGGAATGAAGAGATCAGAAAAAGAGAGTGAAAGAAATGGCTTGTGATCATGGCAGACCAGACCCCACTGAGCTGTGCCTCTGCCTTAAAAACGTCGAGGTGTGCTTGGTGGGTAGCCATTATCCCTCACCTTGTTCCTTTTAGGCTGCCTCGAAGAGTCGTTCTGTCTTGAACTTAAGTAATGGATTCACAGTCTTCGCTTTCATGGGTTAGGTTTCTATCATTGGACTGCAAGTATACTAAAGCCATCAATCTTCCTATTTTCTTTCTTTTTATGCAGACAAGACAACACAAGTGGTACTCGACTAAACCCAAATCTGTTAGATGCTTATAGGAAACACATATGTTCTC

mRNA sequence

ACCAGAAATGAAAGAGAAAGAGAAAATAAAAGGGAAACGAAAACGAAATCCCACTCGTACACAGCTGCCATTGCGCTGCTCACATCTGCTAATTTGTTCTGTTTAACTCTGTTTTTTAGGCTCTTCTTTCGAGTTCTGAGGAGCTCTGCAATTTTCGAACGAAAAGAAAAATGGGGTGTGAGTGCAACAACAATGGCGTCATTGGCCGCAGTAGAATCTTGTGTGCGACTCTTTCTTTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTCATGGCTGAAGGCAGATCTATTCCAAAGAGTGGCAAGACAGTGAGTGAAGATAAAGTGGTATTACGAGGACAAATTGGGTCAAGGCCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGCACACTGTGAGGCCATTCAAGTTCCTGCAAACCCACAAAAGTCTTCAACATTGAAGAACATAGCTTATGCTAGAGATGAAGCCTCAAATTACAAACCCATGAGCTGGAAATGCAAATGTGGGAGCTTAATCTTCAACCCTTAAGTAGATGATCATCATCAACTCTGTAAATTAGTGATTATATGATTGTTTCTTTCACTTAACACTCTCTAGATATCTCTCTCTTTTGTTCTGACACTCTTGAGGGTTGAAAGCAGGCATTTGATGAAGAGAATTATGAACTGGGTTTCTTTTCTAACATGCAACTACTTCGGATTCCTTCCATATCAGTTTCATCTTGAAACACTTAAATGGGATAACTCATGAACAGTTTGATTAAGTATAGAAAAGTGGGTGTAAATTGAATGGGAGAGAGAGAGTGAATTTGATTCATTTGAAGGGTGGTGATTGGAATGAAGAGATCAGAAAAAGAGAGTGAAAGAAATGGCTTGTGATCATGGCAGACCAGACCCCACTGAGCTGTGCCTCTGCCTTAAAAACGTCGAGGTGTGCTTGGTGGGTAGCCATTATCCCTCACCTTGTTCCTTTTAGGCTGCCTCGAAGAGTCGTTCTGTCTTGAACTTAAGTAATGGATTCACAGTCTTCGCTTTCATGGGTTAGGTTTCTATCATTGGACTGCAAGTATACTAAAGCCATCAATCTTCCTATTTTCTTTCTTTTTATGCAGACAAGACAACACAAGTGGTACTCGACTAAACCCAAATCTGTTAGATGCTTATAGGAAACACATATGTTCTC

Coding sequence (CDS)

ATGGGGTGTGAGTGCAACAACAATGGCGTCATTGGCCGCAGTAGAATCTTGTGTGCGACTCTTTCTTTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTCATGGCTGAAGGCAGATCTATTCCAAAGAGTGGCAAGACAGTGAGTGAAGATAAAGTGGTATTACGAGGACAAATTGGGTCAAGGCCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGCACACTGTGAGGCCATTCAAGTTCCTGCAAACCCACAAAAGTCTTCAACATTGAAGAACATAGCTTATGCTAGAGATGAAGCCTCAAATTACAAACCCATGAGCTGGAAATGCAAATGTGGGAGCTTAATCTTCAACCCTTAA

Protein sequence

MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIFNP

Homology

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: KAG6594944.1 (EPIDERMAL PATTERNING FACTOR-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.1 bits (658), Expect = 3.9e-65
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ
Sbjct: 97  MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 156

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 157 IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 216

Query: 121 NP 123
           NP
Sbjct: 217 NP 218

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: KAG7026905.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 3.9e-65
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ
Sbjct: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120

Query: 121 NP 123
           NP
Sbjct: 121 NP 122

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: XP_023518506.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 6.7e-65
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ
Sbjct: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSST+KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTMKNIAYARDEASNYKPMSWKCKCGSLIF 120

Query: 121 NP 123
           NP
Sbjct: 121 NP 122

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: XP_023518504.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 6.7e-65
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ
Sbjct: 31  MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 90

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSST+KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 91  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTMKNIAYARDEASNYKPMSWKCKCGSLIF 150

Query: 121 NP 123
           NP
Sbjct: 151 NP 152

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: XP_022963149.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata])

HSP 1 Score: 251.1 bits (640), Expect = 4.8e-63
Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGRSRILCAT+SFLFFLILASTQMRFMAEGRSI KSGKTVSEDKVVLRGQ
Sbjct: 55  MGCECNNNGVIGRSRILCATVSFLFFLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 114

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSS +KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 115 IGSRPPKCERRCSWCAHCEAIQVPANPQKSSAMKNIAYARDEASNYKPMSWKCKCGSLIF 174

Query: 121 NP 123
           NP
Sbjct: 175 NP 176

[Close]

BLAST of Carg18518 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-22
Identity = 60/117 (51.28%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 24  LFFLILASTQMRFMAEGRSIPKS---GKTVSED-KVVLRGQIGSRPPKCER-RCSWCAHC 83
           L  LIL ST    MA GR  P S    K+  +D K+++RG IGSRPP+CER RC  C HC
Sbjct: 12  LILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCGHC 71

Query: 84  EAIQVPANPQ------------KSSTLKNIAYAR-DEASNYKPMSWKCKCGSLIFNP 123
           EAIQVP NPQ             SS   ++ Y R D+++NYKPMSWKCKCG+ I+NP
Sbjct: 72  EAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of Carg18518 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 29/78 (37.18%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 58  RGQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLK-------------NIAYARDEAS 117
           + ++GS PP C  RC+ C  C AIQVP  P +S   +             ++    D+ S
Sbjct: 45  KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 104

Query: 118 NYKPMSWKCKCGSLIFNP 123
           NYKPM WKC C    +NP
Sbjct: 105 NYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Carg18518 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-08
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 52  EDKVVLRGQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSW 111
           E+ V  R +IGS+PP CE++C  C  CEAIQ P       T+ +I +     +NY+P  W
Sbjct: 48  EEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFP-------TISSIPHLSPHYANYQPEGW 104

Query: 112 KCKC 116
           +C C
Sbjct: 108 RCHC 104

[Close]

BLAST of Carg18518 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 37/116 (31.90%), Postives = 49/116 (42.24%), Query Frame = 0


Query: 13  RSRILCATLSFLFFLILASTQMRFMAEGRSIPK------SGKTVSEDKVVLRGQIGSRPP 72
           R R L A L     L L S      A+GR I +       G  +  +K    G  GS PP
Sbjct: 7   RRRFLLAALVTFALLHLFSASSIVSADGRWIGQRTGSDLPGGFIRSNKRF--GGPGSSPP 66

Query: 73  KCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIFNP 123
            C  +C  C  C+ + VP  P  S  L+           Y P +W+CKCG+ +F P
Sbjct: 67  TCRSKCGKCQPCKPVHVPIQPGLSMPLE-----------YYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Carg18518 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 23/64 (35.94%), Postives = 31/64 (48.44%), Query Frame = 0


Query: 59  GQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSL 118
           G  GS PP C  +C  C  C+A+ VP  P     L+           Y P +W+CKCG+ 
Sbjct: 55  GGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLE-----------YYPEAWRCKCGNK 107

Query: 119 IFNP 123
           +F P
Sbjct: 115 LFMP 107

[Close]

BLAST of Carg18518 vs. ExPASy TrEMBL
Match: A0A6J1HJ94 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111463445 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.3e-63
Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGRSRILCAT+SFLFFLILASTQMRFMAEGRSI KSGKTVSEDKVVLRGQ
Sbjct: 55  MGCECNNNGVIGRSRILCATVSFLFFLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 114

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSS +KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 115 IGSRPPKCERRCSWCAHCEAIQVPANPQKSSAMKNIAYARDEASNYKPMSWKCKCGSLIF 174

Query: 121 NP 123
           NP
Sbjct: 175 NP 176

[Close]

BLAST of Carg18518 vs. ExPASy TrEMBL
Match: A0A6J1KNP8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496927 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGR RILCAT+SFLF LILASTQMRFMAEGRSI KSGKTVSEDKVVLRGQ
Sbjct: 30  MGCECNNNGVIGRCRILCATVSFLFLLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 89

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSST+KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 90  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTMKNIAYARDEASNYKPMSWKCKCGSLIF 149

Query: 121 NP 123
           NP
Sbjct: 150 NP 151

[Close]

BLAST of Carg18518 vs. ExPASy TrEMBL
Match: A0A6J1KLZ1 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496927 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGR RILCAT+SFLF LILASTQMRFMAEGRSI KSGKTVSEDKVVLRGQ
Sbjct: 1   MGCECNNNGVIGRCRILCATVSFLFLLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 60

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSST+KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTMKNIAYARDEASNYKPMSWKCKCGSLIF 120

Query: 121 NP 123
           NP
Sbjct: 121 NP 122

[Close]

BLAST of Carg18518 vs. ExPASy TrEMBL
Match: A0A6J1BSQ3 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111005366 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 106/127 (83.46%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           M CECNNNGVIGRSRILCAT+ FLF LILASTQMRFMAEGR +PK G+TV E+KVVLRGQ
Sbjct: 1   MSCECNNNGVIGRSRILCATVPFLFLLILASTQMRFMAEGRLVPKRGQTVGEEKVVLRGQ 60

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSTLKNIAYARDEASNYKPMSWKCKC 120
           IGSRPPKCERRCSWC HCEAIQVP NPQK     SS   N+AYARDEASNYKPMSWKCKC
Sbjct: 61  IGSRPPKCERRCSWCGHCEAIQVPTNPQKSANTNSSAFNNMAYARDEASNYKPMSWKCKC 120

Query: 121 GSLIFNP 123
           GSLIFNP
Sbjct: 121 GSLIFNP 127

[Close]

BLAST of Carg18518 vs. ExPASy TrEMBL
Match: A0A6J1GDI3 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453017 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 105/128 (82.03%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MGCECNNNG-VIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRG 60
           MGCECNNNG VIGRSRILCAT+SFL  LILASTQMR  AEGRSI    KTV+EDK +LRG
Sbjct: 1   MGCECNNNGVVIGRSRILCATVSFLCLLILASTQMRIKAEGRSISMRTKTVNEDKEILRG 60

Query: 61  QIGSRPPKCERRCSWCAHCEAIQVPANPQKSST-----LKNIAYARDEASNYKPMSWKCK 120
           QIGS+PPKCERRCSWC HCEAIQVPANPQKS+T     +KNI YARDEASNYKPMSWKCK
Sbjct: 61  QIGSKPPKCERRCSWCGHCEAIQVPANPQKSATKKSSAVKNIVYARDEASNYKPMSWKCK 120

Query: 121 CGSLIFNP 123
           CGSLIFNP
Sbjct: 121 CGSLIFNP 128

[Close]

BLAST of Carg18518 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-23
Identity = 60/117 (51.28%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 24  LFFLILASTQMRFMAEGRSIPKS---GKTVSED-KVVLRGQIGSRPPKCER-RCSWCAHC 83
           L  LIL ST    MA GR  P S    K+  +D K+++RG IGSRPP+CER RC  C HC
Sbjct: 12  LILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCGHC 71

Query: 84  EAIQVPANPQ------------KSSTLKNIAYAR-DEASNYKPMSWKCKCGSLIFNP 123
           EAIQVP NPQ             SS   ++ Y R D+++NYKPMSWKCKCG+ I+NP
Sbjct: 72  EAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of Carg18518 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 29/78 (37.18%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 58  RGQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLK-------------NIAYARDEAS 117
           + ++GS PP C  RC+ C  C AIQVP  P +S   +             ++    D+ S
Sbjct: 45  KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 104

Query: 118 NYKPMSWKCKCGSLIFNP 123
           NYKPM WKC C    +NP
Sbjct: 105 NYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Carg18518 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-09
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 52  EDKVVLRGQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSW 111
           E+ V  R +IGS+PP CE++C  C  CEAIQ P       T+ +I +     +NY+P  W
Sbjct: 48  EEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFP-------TISSIPHLSPHYANYQPEGW 104

Query: 112 KCKC 116
           +C C
Sbjct: 108 RCHC 104

[Close]

BLAST of Carg18518 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 37/116 (31.90%), Postives = 49/116 (42.24%), Query Frame = 0


Query: 13  RSRILCATLSFLFFLILASTQMRFMAEGRSIPK------SGKTVSEDKVVLRGQIGSRPP 72
           R R L A L     L L S      A+GR I +       G  +  +K    G  GS PP
Sbjct: 7   RRRFLLAALVTFALLHLFSASSIVSADGRWIGQRTGSDLPGGFIRSNKRF--GGPGSSPP 66

Query: 73  KCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIFNP 123
            C  +C  C  C+ + VP  P  S  L+           Y P +W+CKCG+ +F P
Sbjct: 67  TCRSKCGKCQPCKPVHVPIQPGLSMPLE-----------YYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Carg18518 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 23/64 (35.94%), Postives = 31/64 (48.44%), Query Frame = 0


Query: 59  GQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSL 118
           G  GS PP C  +C  C  C+A+ VP  P     L+           Y P +W+CKCG+ 
Sbjct: 55  GGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLE-----------YYPEAWRCKCGNK 107

Query: 119 IFNP 123
           +F P
Sbjct: 115 LFMP 107

The following BLAST results are available for this feature:

BLAST of Carg18518 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594944.1	3.9e-65	100.00	EPIDERMAL PATTERNING FACTOR-like protein 2, partial [Cucurbita argyrosperma subs...	[more]
KAG7026905.1	3.9e-65	100.00	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023518506.1	6.7e-65	99.18	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita pepo subsp. pep...	[more]
XP_023518504.1	6.7e-65	99.18	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022963149.1	4.8e-63	96.72	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata]	[more]

BLAST of Carg18518 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T068	3.2e-22	51.28	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LFT5	1.8e-09	37.18	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
C4B8C4	4.6e-08	40.63	EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q2V3I3	2.5e-06	31.90	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	3.6e-05	35.94	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Carg18518 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJ94	2.3e-63	96.72	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KNP8	1.1e-62	95.90	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1KLZ1	1.1e-62	95.90	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1BSQ3	1.4e-55	83.46	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1GDI3	1.4e-52	82.03	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Carg18518 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37810.1	2.3e-23	51.28	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G10310.1	1.3e-10	37.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13898.1	3.2e-09	40.63	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT4G14723.1	1.8e-07	31.90	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]
AT3G22820.1	2.6e-06	35.94	allergen-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 60..122 e-value: 3.2E-17 score: 62.2
None	No IPR available	PANTHER	PTHR33109:SF71	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2	coord: 6..122
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 6..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18518-RA	Carg18518-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane