Carg18499 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18499
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Hydroxyproline-rich glycoprotein family protein
Location	Carg_Chr07: 2640691 .. 2641170 (-)
RNA-Seq Expression	Carg18499
Synteny	Carg18499

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTCCCGATTTCTCGCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGCTTTCCTCTCGGCACTGCTCTCCTCCTTCTCGTCATCTTCACCTTGAGCGGAATCTTCTCCTGCTGTTACCATTGGGATAAACTCAGATCCATCCGCCGTTCCGCTGCCCAAGCACTACATCACGATCATCATCTCCTCCCTTCGTCTCCATCCAAATCCAACTCTACTGCACTGGTAATTTTAATTCCGCTGCTTCTTCATCATTTCCTTTCTTTCTTTCGATTGTTTAAACGAGGAATTGATTTTTTGGAATAGGATTTGGAGAAGAATCAAAGAGAGAGCTTATCGGTGGTGATGCCTGGGGATTCGATTCCCAAATTCATCGCGATGCCCTGCCCTAGAGAGCCGCCTCGGCCGGAGATGATTCATGTGAAAGTGGAGAAGCCGCCGAAACCGCCGCGAATCGCGATTCCTTTCTATTAG

mRNA sequence

ATGGAGACTCCCGATTTCTCGCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGCTTTCCTCTCGGCACTGCTCTCCTCCTTCTCGTCATCTTCACCTTGAGCGGAATCTTCTCCTGCTGTTACCATTGGGATAAACTCAGATCCATCCGCCGTTCCGCTGCCCAAGCACTACATCACGATCATCATCTCCTCCCTTCGTCTCCATCCAAATCCAACTCTACTGCACTGGATTTGGAGAAGAATCAAAGAGAGAGCTTATCGGTGGTGATGCCTGGGGATTCGATTCCCAAATTCATCGCGATGCCCTGCCCTAGAGAGCCGCCTCGGCCGGAGATGATTCATGTGAAAGTGGAGAAGCCGCCGAAACCGCCGCGAATCGCGATTCCTTTCTATTAG

Coding sequence (CDS)

ATGGAGACTCCCGATTTCTCGCCGCCTCACGCCGACGCATCCAGACCCTCCTTAGGCTTTCCTCTCGGCACTGCTCTCCTCCTTCTCGTCATCTTCACCTTGAGCGGAATCTTCTCCTGCTGTTACCATTGGGATAAACTCAGATCCATCCGCCGTTCCGCTGCCCAAGCACTACATCACGATCATCATCTCCTCCCTTCGTCTCCATCCAAATCCAACTCTACTGCACTGGATTTGGAGAAGAATCAAAGAGAGAGCTTATCGGTGGTGATGCCTGGGGATTCGATTCCCAAATTCATCGCGATGCCCTGCCCTAGAGAGCCGCCTCGGCCGGAGATGATTCATGTGAAAGTGGAGAAGCCGCCGAAACCGCCGCGAATCGCGATTCCTTTCTATTAG

Protein sequence

METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHHDHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEKPPKPPRIAIPFY

Homology

[Close]

BLAST of Carg18499 vs. NCBI nr
Match: XP_022962719.1 (uncharacterized protein At5g65660-like [Cucurbita moschata] >KAG6594923.1 hypothetical protein SDJN03_11476, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026886.1 hypothetical protein SDJN02_10893, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH
Sbjct: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK
Sbjct: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIAIPFY
Sbjct: 121 PPKPPRIAIPFY 132

[Close]

BLAST of Carg18499 vs. NCBI nr
Match: XP_023518276.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.6 bits (675), Expect = 4.5e-67
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           DHHLLPSSPSKSN TALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMI VKVEK
Sbjct: 120 DHHLLPSSPSKSNPTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 179

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIAIPFY
Sbjct: 180 PPKPPRIAIPFY 191

[Close]

BLAST of Carg18499 vs. NCBI nr
Match: XP_023003846.1 (uncharacterized protein At5g65660-like [Cucurbita maxima])

HSP 1 Score: 263.5 bits (672), Expect = 1.0e-66
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMI V VEK
Sbjct: 120 DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVIVEK 179

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIAIPFY
Sbjct: 180 PPKPPRIAIPFY 191

[Close]

BLAST of Carg18499 vs. NCBI nr
Match: XP_022133072.1 (uncharacterized protein At5g65660 [Momordica charantia])

HSP 1 Score: 232.3 bits (591), Expect = 2.5e-57
Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q   H
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---H 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
            H  LPSSPSKSN  +LDLE NQR+SLSV+MPGDSIPKFIAMPCPREPPRPEMI VKVEK
Sbjct: 61  PHLHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIA+PFY
Sbjct: 121 PPKPPRIAVPFY 129

[Close]

BLAST of Carg18499 vs. NCBI nr
Match: XP_038881262.1 (uncharacterized protein At5g65660-like [Benincasa hispida])

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-56
Identity = 115/132 (87.12%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q LH 
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQPLHD 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           D   L SSPSKSN T+ DLEKNQRESLSV+MPGDSIPKFIAMPCPREPPR EMI VKVEK
Sbjct: 61  DDLHLRSSPSKSNPTSQDLEKNQRESLSVLMPGDSIPKFIAMPCPREPPRAEMIEVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           PPKP RIA+PFY
Sbjct: 121 PPKPLRIAVPFY 132

[Close]

BLAST of Carg18499 vs. ExPASy Swiss-Prot
Match: Q9LSK9 (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.7e-35
Identity = 78/135 (57.78%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 3   TPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHHDH 62
           T DFSPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDK RS+RRS A       
Sbjct: 4   TQDFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANG--RPS 63

Query: 63  HLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEKPP 122
             + S+P K      +++K Q  S+ V+MPGD+ PKFIA+PCP  PPRPE + V V+ PP
Sbjct: 64  ADIESNPYKPKPPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPP 123

Query: 123 -----KPPRIAIPFY 133
                KP R  +P Y
Sbjct: 124 QSPPVKPARFPVPLY 136

[Close]

BLAST of Carg18499 vs. ExPASy TrEMBL
Match: A0A6J1HHX0 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111463125 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 6.8e-69
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH
Sbjct: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK
Sbjct: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIAIPFY
Sbjct: 121 PPKPPRIAIPFY 132

[Close]

BLAST of Carg18499 vs. ExPASy TrEMBL
Match: A0A6J1KQE2 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111497312 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 4.9e-67
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH
Sbjct: 60  METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 119

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
           DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMI V VEK
Sbjct: 120 DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIQVIVEK 179

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIAIPFY
Sbjct: 180 PPKPPRIAIPFY 191

[Close]

BLAST of Carg18499 vs. ExPASy TrEMBL
Match: A0A6J1BVL2 (uncharacterized protein At5g65660 OS=Momordica charantia OX=3673 GN=LOC111005755 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.2e-57
Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME+PDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q   H
Sbjct: 1   MESPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---H 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
            H  LPSSPSKSN  +LDLE NQR+SLSV+MPGDSIPKFIAMPCPREPPRPEMI VKVEK
Sbjct: 61  PHLHLPSSPSKSNPNSLDLETNQRDSLSVLMPGDSIPKFIAMPCPREPPRPEMIQVKVEK 120

Query: 121 PPKPPRIAIPFY 133
           PPKPPRIA+PFY
Sbjct: 121 PPKPPRIAVPFY 129

[Close]

BLAST of Carg18499 vs. ExPASy TrEMBL
Match: A0A6J1GCM8 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111452993 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 108/131 (82.44%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME+PDFSPPHADASRPSL FPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q    
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---- 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
                P+SPSK   T+LDLEKNQR+SLSV+MPGDSIPKFIAMPCPREPPRPEM+ VKVEK
Sbjct: 61  ---FNPTSPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEK 120

Query: 121 PPKPPRIAIPF 132
           PPKPPRIA+PF
Sbjct: 121 PPKPPRIAVPF 124

[Close]

BLAST of Carg18499 vs. ExPASy TrEMBL
Match: A0A6J1IPP8 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111478811 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.9e-53
Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 0


Query: 1   METPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHH 60
           ME+PDFSPPHADASRPSL FPLGTALLLLVIFTLSGIFSCCYHWDKLRS+RRSA+Q    
Sbjct: 1   MESPDFSPPHADASRPSLAFPLGTALLLLVIFTLSGIFSCCYHWDKLRSLRRSASQ---- 60

Query: 61  DHHLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEK 120
                P+SPSK   T+LDLEKNQR+SLSV+MPGDSIPKFIAMPCPREPPRPEM+ VKVEK
Sbjct: 61  ---FNPTSPSKFTPTSLDLEKNQRDSLSVMMPGDSIPKFIAMPCPREPPRPEMVEVKVEK 120

Query: 121 PPK--PPRIAIPFY 133
           PPK  PPRIA+PFY
Sbjct: 121 PPKPPPPRIAVPFY 127

[Close]

BLAST of Carg18499 vs. TAIR 10
Match: AT5G65660.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 148.7 bits (374), Expect = 3.4e-36
Identity = 78/135 (57.78%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 3   TPDFSPPHADASRPSLGFPLGTALLLLVIFTLSGIFSCCYHWDKLRSIRRSAAQALHHDH 62
           T DFSPPH DASRPSLGFPLGTALLL++IF+LSGIFSCCYHWDK RS+RRS A       
Sbjct: 4   TQDFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANG--RPS 63

Query: 63  HLLPSSPSKSNSTALDLEKNQRESLSVVMPGDSIPKFIAMPCPREPPRPEMIHVKVEKPP 122
             + S+P K      +++K Q  S+ V+MPGD+ PKFIA+PCP  PPRPE + V V+ PP
Sbjct: 64  ADIESNPYKPKPPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPP 123

Query: 123 -----KPPRIAIPFY 133
                KP R  +P Y
Sbjct: 124 QSPPVKPARFPVPLY 136

The following BLAST results are available for this feature:

BLAST of Carg18499 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962719.1	1.4e-68	100.00	uncharacterized protein At5g65660-like [Cucurbita moschata] >KAG6594923.1 hypoth...	[more]
XP_023518276.1	4.5e-67	98.48	uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003846.1	1.0e-66	98.48	uncharacterized protein At5g65660-like [Cucurbita maxima]	[more]
XP_022133072.1	2.5e-57	87.12	uncharacterized protein At5g65660 [Momordica charantia]	[more]
XP_038881262.1	1.2e-56	87.12	uncharacterized protein At5g65660-like [Benincasa hispida]	[more]

BLAST of Carg18499 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSK9	4.7e-35	57.78	Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P...	[more]

BLAST of Carg18499 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHX0	6.8e-69	100.00	uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KQE2	4.9e-67	98.48	uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114973...	[more]
A0A6J1BVL2	1.2e-57	87.12	uncharacterized protein At5g65660 OS=Momordica charantia OX=3673 GN=LOC111005755...	[more]
A0A6J1GCM8	1.8e-53	82.44	uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1IPP8	8.9e-53	81.34	uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114788...	[more]

BLAST of Carg18499 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65660.1	3.4e-36	57.78	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..85
None	No IPR available	PANTHER	PTHR34291:SF11	SUBFAMILY NOT NAMED	coord: 3..132
IPR037699	Uncharacterized protein At5g65660-like	PANTHER	PTHR34291	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 3..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18499-RA	Carg18499-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane