Carg18491 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18491
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	elongator complex protein 4
Location	Carg_Chr07: 2602243 .. 2605669 (+)
RNA-Seq Expression	Carg18491
Synteny	Carg18491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTATTAACCCAACTATGGCAGCTACGACAAAGCCTAGGACAAGCAGCTTCTCCCGCAACCTTTCTTCTGCACATTCATCTCAGACGCCAGGACTTAAACATGGTCCCAATGGCACCACATTCATTTCATCCGGAATACCAGACCTTGACAGTACTTTCTGCATCATATTCATCAGTTCAAAATTGTTGTGAATTGAAATGTTGAAGACTTGTAATCTATACCCATGTTATTCATTTGGACTAGCTGGCAATATAAGAAGTATTTTGGCGAAAGTCAAGAGAGCGTCAATGCCATTGGTAAGCTTACTGAAACCTCAACCTAATAATTTCTTTTCCCGGAATTTGGTCTCAATTTATAACGACCAATGATTTGTGTTGGTTGTGTGGTGTAACTGCTCGTCCATATTATGGTGAAGCTTTCAAGGAAAAGTACATGTTTCAGTCCAATTTTCTTCAGTATGTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGAATGATCATGGGTTTATAAGTGAGGAATACTACCTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCTTCTAACATGGTATCAGAGCCATGCCCTAAACTTAGTCGTGCCAATAGATTGGTAAATCCTCAAATCCTCAAATATCGAACAAAGAACTCCTAAAGAAAAGGAGCCAAGCCCCTCCTCGAAGGCAGTCAAAAATGACTAAGACTCCAAAGGAGTCGAGCCTCGATTAAGGGGAGGCGCACTTTGTTCAGGGGAGGTGTTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGGTGTGATATGGGTTTTATTATATCTTTAGTTCACGTTTATTGCATTCCTTCTAGTCTTTTTTTTCTTTCTTTTTCCTTTACCTCCTGAGATTTTATCCCTTTTTCCCTTAAGGATGGGAGATATGTTCTTGTGTAGTAACCAAATACTGATTCATTTGCGTGGTTGGATCTTGCATTATAAATGTTAAAAAGAATGCATCTTGAGATCTGTTCATTCCCCCCCACCCCATAATGGCCACTCTTCCTGACACAAGTTTAATATGGGTGCAATATTATTCTTATAGGGTTAATTATTTAATGCTTGTACAGATGGTAAATGCGAGTTTTGCAATGACTTTGATTTGCGAAAGCCCTTTGACAGACATTTTTTCAGCGGGAAGCATGTGGAATGTGTTAGTATACTAGATTCTTCTAGTCTTTCTACTACTCTTGATCGTTGCGCCACATTCCTATCACAAGTTCCAAGGTAATGTTTACCTCTACTTTTCCCTCTAGAATGTATCAGTTTCAGTCATTGCATTAGTTTGTAAAGTATATTCAATTGAATTTATTGTAAAAGATGTCTAGCAACTATTCTTGTTTGATGTAACGAAGAAGTGCTAATCTGTTTTTGAGGTGGCTGGAGATGGAAGTAGTTAGATTGAGACCTTGGGTACAGATCCTTCTTTTGTATTTGGAGAAAGTTTGTTAAACAGAAATAGGATCTTCTTATTCAGTGTAGAGGTCCTTGGGATTTGGAAACATAATTAGGCACCAAATTGCATAATGTAGCGTTTTCATGAAATGTAGTTTTCGCCGATGGTAACTACCTGAGTTCATTTTCTACCTCTAAATGCTAGAGAAGAACTTCAGGCCAATCTGAAATGAATTATTCTTTCTTTCATCAATGGTTTATCCCATTTTCAGATTTGGTATTCAAGAAGACTTCTTTGCTAGATTGTGAGTGGTGTGGAATTTATCTGATATAATGCCTGAATTAGGGATTGAATTCATTATTTTATTTATTAAATGTGAATATGTGAAGGATATTCATAATGTGGGTGGACTTGTCCCTTGTCCATCTACATTGTTGTATTATTTGTTGAGGTCCTCTTTCATCCGTACTGCTCTGCAACCTTGTGCATTCTCTTATTTTTCCGTATGAAAATTTTGTTTTCAAAAGACAAGAAACAGGAAAAGAAAATGTGAATCCGTCAATTGGGTAGCCTGAAATTCATTTTAATTTTCGTTTTTTACATATTTGAATGTGTTCATTCTGTTCCTTTATCTGGATGATCATCTTCCTTTGTTGCTGACAATATATTGTACTTACTTGGATGTCACATGACAATTCCAGAAATGACGGCAATATATCCTCTGCTGGCCGTATTGCCATTCAATCGTTATGTGCTCCACAATGTGATCATTCCAACATGGTTAGTAACAAATTGAATTTACGCTCTTTGGTTACATGATTGTTTGCTCGATTATACTTGATAAATCTCTGTGCTCACTTTCCTCCATAGAAGATTTGAAACGGGGTATTGGATTAAAAAAAAACCTTCGTCTGTAATCTAAAATTTAAAACAAGTGTTTTCTTTTTTTTTTTTCTCGATCATTTGAGCCCTCATTGTAAAGCTGGAGCTGCAGGAATGGGAAATGCTTTCCTTTTTAAGGTCTCTGAAAAGCATGCTAAGGTCCTCAAATGCAGTAGCTGTAGTGACGTTTTCCCCTTCCCTACTCTTGCCATCCTTCTCTAAAAGATGGCAGCACATGGCAGATACCTTGCTTTCTGTCAAGGCAATCCCAGGTTTAGACGTAGCATCTCAATTTGCCTTATTGTCTCTAGCATCAATGAGATATTGACTAAAACTATTGCAGATGAGGATAAGGAATTAGCAAATCTCCTCACTGGTTACCAAGACATGGTTGGCCTTCTCAATATTCATAAAGTGGCTCAAATCAATACGCAGGTATGCATACCTGTAACTTAGGGATGGACCCAACGGTGAAATGCTGCTTCTGCAAAATTTTCTTCCAATGCTTGCTACTTCACTGTTCTGCATATTTCTATTGGTTTTGGTCCATACTTCATTCATGTGCCATGATTGAGTGCAATATTTGCTAGCAGCTCTGAATGGTTATTGACTCTTAAAGCCATAGATAGCGTTCTAATGTATTTATTTCTTATTAGGGTTGATACGCATTATTCTTTGGGTTGGTTTAATTTCCTATATGACTGATATCTCCTTTTTAGCTGGCTTTTACTCATGCTCATGGATCCAGAATTTGACTGCAGGTTCCAAGAATTCTTGAGGCGACTACATTCTCTATAAAGTTGCAAAAGAGAAGGTTTTTAGTTTTAGAATGTCTTAATCAAGCGCCTGTTGATGGTTCAACCGGGAGCTCATATGGCTCTACTGGGAGTTGTTCTGGGTCCTCCAAGACAGGTTCTCTCGACTTTTAGTTTCCAAATGATATTAGCCTAAAGAATTTGAGAGTGGATTTTTTAAAGTTAAATTTGAAGTTTAGGATGATTGTTGAATGTTTATATTATCTCCCTCTTTGGCCTCCATTCCTGTATTA

mRNA sequence

AGTATTAACCCAACTATGGCAGCTACGACAAAGCCTAGGACAAGCAGCTTCTCCCGCAACCTTTCTTCTGCACATTCATCTCAGACGCCAGGACTTAAACATGGTCCCAATGGCACCACATTCATTTCATCCGGAATACCAGACCTTGACAGTACTTTCTGCATCATATTCATCAGTTCAAAATTGTTCTGGCAATATAAGAAGTATTTTGGCGAAAGTCAAGAGAGCGTCAATGCCATTGATGGTAAATGCGAGTTTTGCAATGACTTTGATTTGCGAAAGCCCTTTGACAGACATTTTTTCAGCGGGAAGCATGTGGAATGTGTTAGTATACTAGATTCTTCTAGTCTTTCTACTACTCTTGATCGTTGCGCCACATTCCTATCACAAGTTCCAAGAAATGACGGCAATATATCCTCTGCTGGCCGTATTGCCATTCAATCGTTATGTGCTCCACAATGTGATCATTCCAACATGCTGGAGCTGCAGGAATGGGAAATGCTTTCCTTTTTAAGGTCTCTGAAAAGCATGCTAAGGTCCTCAAATGCAGTAGCTGTAGTGACGTTTTCCCCTTCCCTACTCTTGCCATCCTTCTCTAAAAGATGGCAGCACATGGCAGATACCTTGCTTTCTGTCAAGGCAATCCCAGATGAGGATAAGGAATTAGCAAATCTCCTCACTGGTTACCAAGACATGGTTGGCCTTCTCAATATTCATAAAGTGGCTCAAATCAATACGCAGGTTCCAAGAATTCTTGAGGCGACTACATTCTCTATAAAGTTGCAAAAGAGAAGGTTTTTAGTTTTAGAATGTCTTAATCAAGCGCCTGTTGATGGTTCAACCGGGAGCTCATATGGCTCTACTGGGAGTTGTTCTGGGTCCTCCAAGACAGGTTCTCTCGACTTTTAGTTTCCAAATGATATTAGCCTAAAGAATTTGAGAGTGGATTTTTTAAAGTTAAATTTGAAGTTTAGGATGATTGTTGAATGTTTATATTATCTCCCTCTTTGGCCTCCATTCCTGTATTA

Coding sequence (CDS)

AGTATTAACCCAACTATGGCAGCTACGACAAAGCCTAGGACAAGCAGCTTCTCCCGCAACCTTTCTTCTGCACATTCATCTCAGACGCCAGGACTTAAACATGGTCCCAATGGCACCACATTCATTTCATCCGGAATACCAGACCTTGACAGTACTTTCTGCATCATATTCATCAGTTCAAAATTGTTCTGGCAATATAAGAAGTATTTTGGCGAAAGTCAAGAGAGCGTCAATGCCATTGATGGTAAATGCGAGTTTTGCAATGACTTTGATTTGCGAAAGCCCTTTGACAGACATTTTTTCAGCGGGAAGCATGTGGAATGTGTTAGTATACTAGATTCTTCTAGTCTTTCTACTACTCTTGATCGTTGCGCCACATTCCTATCACAAGTTCCAAGAAATGACGGCAATATATCCTCTGCTGGCCGTATTGCCATTCAATCGTTATGTGCTCCACAATGTGATCATTCCAACATGCTGGAGCTGCAGGAATGGGAAATGCTTTCCTTTTTAAGGTCTCTGAAAAGCATGCTAAGGTCCTCAAATGCAGTAGCTGTAGTGACGTTTTCCCCTTCCCTACTCTTGCCATCCTTCTCTAAAAGATGGCAGCACATGGCAGATACCTTGCTTTCTGTCAAGGCAATCCCAGATGAGGATAAGGAATTAGCAAATCTCCTCACTGGTTACCAAGACATGGTTGGCCTTCTCAATATTCATAAAGTGGCTCAAATCAATACGCAGGTTCCAAGAATTCTTGAGGCGACTACATTCTCTATAAAGTTGCAAAAGAGAAGGTTTTTAGTTTTAGAATGTCTTAATCAAGCGCCTGTTGATGGTTCAACCGGGAGCTCATATGGCTCTACTGGGAGTTGTTCTGGGTCCTCCAAGACAGGTTCTCTCGACTTTTAG

Protein sequence

SINPTMAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFCIIFISSKLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLNIHKVAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSTGSCSGSSKTGSLDF

Homology

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: KAG7026878.1 (Elongator complex protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 596.3 bits (1536), Expect = 1.5e-166
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 1   SINPTMAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFCIIFISS 60
           SINPTMAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFCIIFISS
Sbjct: 1   SINPTMAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFCIIFISS 60

Query: 61  KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSLSTT 120
           KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSLSTT
Sbjct: 61  KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSLSTT 120

Query: 121 LDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSMLRS 180
           LDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSMLRS
Sbjct: 121 LDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSMLRS 180

Query: 181 SNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLNIHK 240
           SNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLNIHK
Sbjct: 181 SNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLNIHK 240

Query: 241 VAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSTGSCSGSSKTGSL 300
           VAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSTGSCSGSSKTGSL
Sbjct: 241 VAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSTGSCSGSSKTGSL 300

Query: 301 DF 303
           DF
Sbjct: 301 DF 302

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: KAG6594913.1 (UDP-glycosyltransferase 91A1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 526.6 bits (1355), Expect = 1.5e-145
Identity = 286/372 (76.88%), Postives = 291/372 (78.23%), Query Frame = 0


Query: 1   SINPTMAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC------ 60
           SINPTMAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C      
Sbjct: 480 SINPTMAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLG 539

Query: 61  -------------------------------IIFISS----------------------- 120
                                          +++ S                        
Sbjct: 540 SLVLVMEDAEAPHHMLLLRNFMSQGLVHHQPLLYASPSRDPRGFLGTLPSPGTSKDNKSR 599

Query: 121 ----------KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVS 180
                     ++ WQYKKYFGESQESVNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVS
Sbjct: 600 DSSAEQEKVLRIAWQYKKYFGESQESVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVS 659

Query: 181 ILDSSSLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSF 240
           ILDSSSLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSF
Sbjct: 660 ILDSSSLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSF 719

Query: 241 LRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQ 300
           LRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQ
Sbjct: 720 LRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQ 779

Query: 301 DMVGLLNIHKVAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSTGS 303
           DMVGLLNIHKVAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSTGS
Sbjct: 780 DMVGLLNIHKVAQINTQVPRILEATTFSIKLQKRRFLVLECLNQAPVDGSTGSSYGSTGS 839

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: XP_022963340.1 (elongator complex protein 4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 517.3 bits (1331), Expect = 8.8e-143
Identity = 281/367 (76.57%), Postives = 286/367 (77.93%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDSKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQESVNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVSILDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQESVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
           SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSFLRSLK
Sbjct: 181 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSFLRSLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL
Sbjct: 241 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 300

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: XP_023003256.1 (elongator complex protein 4 [Cucurbita maxima] >XP_023003257.1 elongator complex protein 4 [Cucurbita maxima] >XP_023003258.1 elongator complex protein 4 [Cucurbita maxima])

HSP 1 Score: 511.5 bits (1316), Expect = 4.8e-141
Identity = 277/367 (75.48%), Postives = 284/367 (77.38%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           M ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MEATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDNKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQE+VNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVS+LDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQENVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSLLDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
           SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSFLRSLK
Sbjct: 181 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSFLRSLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL
Sbjct: 241 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 300

[Close]

BLAST of Carg18491 vs. NCBI nr
Match: XP_022963337.1 (elongator complex protein 4 isoform X1 [Cucurbita moschata] >XP_022963338.1 elongator complex protein 4 isoform X1 [Cucurbita moschata] >XP_022963339.1 elongator complex protein 4 isoform X1 [Cucurbita moschata])

HSP 1 Score: 506.5 bits (1303), Expect = 1.6e-139
Identity = 281/384 (73.18%), Postives = 286/384 (74.48%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDSKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQESVNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVSILDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQESVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 180

Query: 186 SLSTTLDRCATFLSQVP-----------------RNDGNISSAGRIAIQSLCAPQCDHSN 245
           SLSTTLDRCATFLSQVP                 RNDGNISSAGRIAIQSLCAPQCDHSN
Sbjct: 181 SLSTTLDRCATFLSQVPRFGIQEDFITWMSHDNSRNDGNISSAGRIAIQSLCAPQCDHSN 240

Query: 246 MLELQEWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDE 303
           M    EWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDE
Sbjct: 241 M----EWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDE 300

[Close]

BLAST of Carg18491 vs. ExPASy Swiss-Prot
Match: Q9C778 (Elongator complex protein 4 OS=Arabidopsis thaliana OX=3702 GN=ELP4 PE=1 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 6.0e-86
Identity = 191/367 (52.04%), Postives = 230/367 (62.67%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTF-------CIIFI 65
           MAA     +SSFSRN+S   S Q PGLK GPNGT FISSGI DLD           ++ +
Sbjct: 1   MAAPNVRSSSSFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMV 60

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 61  MEDPEAPHHMDLLRTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPD 120

Query: 126 ---SSKLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
              S ++ WQY+KY  E+Q+  NAID   ++ NDFD+RKP +R F SG+ ++CVS+LDSS
Sbjct: 121 QGESLRIAWQYRKYL-ENQK--NAID---DYSNDFDMRKPLERQFLSGRPIDCVSLLDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
            LS   D CATFLS+ PRN  NI+S GRIAIQS C+P C++S     +E +MLSF+R LK
Sbjct: 181 DLSIAQDHCATFLSKFPRNSSNIASIGRIAIQSFCSPLCEYSE----KESDMLSFIRLLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SML  SNAVA+VTF PSLL PS SKR QHMADTLLS+KAIPD DKEL  LLTGY+D+ G 
Sbjct: 241 SMLMVSNAVAIVTFPPSLLSPSSSKRLQHMADTLLSIKAIPDGDKELEKLLTGYKDINGF 300

[Close]

BLAST of Carg18491 vs. ExPASy TrEMBL
Match: A0A6J1HHQ8 (elongator complex protein 4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463575 PE=3 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 4.3e-143
Identity = 281/367 (76.57%), Postives = 286/367 (77.93%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDSKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQESVNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVSILDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQESVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
           SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSFLRSLK
Sbjct: 181 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSFLRSLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL
Sbjct: 241 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 300

[Close]

BLAST of Carg18491 vs. ExPASy TrEMBL
Match: A0A6J1KLY1 (elongator complex protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111496919 PE=3 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 2.3e-141
Identity = 277/367 (75.48%), Postives = 284/367 (77.38%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           M ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MEATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDNKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQE+VNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVS+LDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQENVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSLLDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
           SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSFLRSLK
Sbjct: 181 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSFLRSLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL
Sbjct: 241 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 300

[Close]

BLAST of Carg18491 vs. ExPASy TrEMBL
Match: A0A6J1HJT5 (elongator complex protein 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463575 PE=3 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 7.5e-140
Identity = 281/384 (73.18%), Postives = 286/384 (74.48%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC----------- 65
           MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLD   C           
Sbjct: 1   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLV 60

Query: 66  --------------------------IIFISS---------------------------- 125
                                     +++ S                             
Sbjct: 61  MEDAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGTSKDSKSRDSSAE 120

Query: 126 -----KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
                ++ WQYKKYFGESQESVNAIDGK EFCNDFDLRKPFDRHFFSGKHVECVSILDSS
Sbjct: 121 QEKGLRIAWQYKKYFGESQESVNAIDGKYEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 180

Query: 186 SLSTTLDRCATFLSQVP-----------------RNDGNISSAGRIAIQSLCAPQCDHSN 245
           SLSTTLDRCATFLSQVP                 RNDGNISSAGRIAIQSLCAPQCDHSN
Sbjct: 181 SLSTTLDRCATFLSQVPRFGIQEDFITWMSHDNSRNDGNISSAGRIAIQSLCAPQCDHSN 240

Query: 246 MLELQEWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDE 303
           M    EWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDE
Sbjct: 241 M----EWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDE 300

[Close]

BLAST of Carg18491 vs. ExPASy TrEMBL
Match: A0A0A0KLQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497360 PE=3 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.4e-130
Identity = 255/365 (69.86%), Postives = 271/365 (74.25%), Query Frame = 0


Query: 8   ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC------------- 67
           A TKPRTSSFSRN SSAHSS+TPG KHGPNGTTFISSGIPDLD   C             
Sbjct: 2   AATKPRTSSFSRNFSSAHSSKTPGFKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVME 61

Query: 68  ------------------------IIFISS------------------------------ 127
                                   +++ S                               
Sbjct: 62  DAEAPHHMLLLRNFMSQGLVHDQPLLYASPSRDPRGFLGTLPSPGASKDDKSRDNSTEQE 121

Query: 128 ---KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSL 187
              ++ WQYKKYFG+ QES NAID K EFCNDFDLR+PFDRHFFSGKHVECVSILDSSSL
Sbjct: 122 KGLRIAWQYKKYFGDDQESANAIDSKYEFCNDFDLRRPFDRHFFSGKHVECVSILDSSSL 181

Query: 188 STTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSM 247
           ST  DRCATFLSQVPRNDGNISS GRIAIQSLCAPQCDHSNM    EWEMLSFLRSLKSM
Sbjct: 182 STLRDRCATFLSQVPRNDGNISSGGRIAIQSLCAPQCDHSNM----EWEMLSFLRSLKSM 241

Query: 248 LRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLN 303
           +RSSNAVAVVTF PSLLLPSFSKRWQHMADTLLSV+AIPDEDKELA LLTGYQDMVGLLN
Sbjct: 242 VRSSNAVAVVTFPPSLLLPSFSKRWQHMADTLLSVRAIPDEDKELAKLLTGYQDMVGLLN 301

[Close]

BLAST of Carg18491 vs. ExPASy TrEMBL
Match: A0A1S3B1C3 (elongator complex protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484919 PE=3 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.9e-128
Identity = 252/365 (69.04%), Postives = 268/365 (73.42%), Query Frame = 0


Query: 8   ATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTFC------------- 67
           A TKPRT SFSRN SSAHSS+TPG KHGPNGTTFISSGIPDLD   C             
Sbjct: 2   AATKPRTGSFSRNFSSAHSSKTPGYKHGPNGTTFISSGIPDLDKILCGGFPLGSLVLVME 61

Query: 68  ------------------------IIFISS------------------------------ 127
                                   +++ S                               
Sbjct: 62  DAEAPHHMLLLRNFMSQGLVHNQPLLYASPSRDPRGFLGTLPSPGASKDDKSRDNSSEQE 121

Query: 128 ---KLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSSSL 187
              ++ WQYKKYFG+ QES NAID K EFCNDFDLR+PFDRHFFSGKHVECVSILDSSSL
Sbjct: 122 KGLRIAWQYKKYFGDDQESTNAIDSKYEFCNDFDLRRPFDRHFFSGKHVECVSILDSSSL 181

Query: 188 STTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLKSM 247
           S   DRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM    EWEMLSFLR LKSM
Sbjct: 182 SNFRDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNM----EWEMLSFLRYLKSM 241

Query: 248 LRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGLLN 303
           +RSSNAVAVVTF PSLL PSFSKRWQHMADTLLSV+AIPDEDKELA LLTGYQDMVGLLN
Sbjct: 242 VRSSNAVAVVTFPPSLLSPSFSKRWQHMADTLLSVRAIPDEDKELAKLLTGYQDMVGLLN 301

[Close]

BLAST of Carg18491 vs. TAIR 10
Match: AT3G11220.1 (Paxneb protein-related )

HSP 1 Score: 318.9 bits (816), Expect = 4.3e-87
Identity = 191/367 (52.04%), Postives = 230/367 (62.67%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTF-------CIIFI 65
           MAA     +SSFSRN+S   S Q PGLK GPNGT FISSGI DLD           ++ +
Sbjct: 1   MAAPNVRSSSSFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMV 60

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 61  MEDPEAPHHMDLLRTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPD 120

Query: 126 ---SSKLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
              S ++ WQY+KY  E+Q+  NAID   ++ NDFD+RKP +R F SG+ ++CVS+LDSS
Sbjct: 121 QGESLRIAWQYRKYL-ENQK--NAID---DYSNDFDMRKPLERQFLSGRPIDCVSLLDSS 180

Query: 186 SLSTTLDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMLELQEWEMLSFLRSLK 245
            LS   D CATFLS+ PRN  NI+S GRIAIQS C+P C++S     +E +MLSF+R LK
Sbjct: 181 DLSIAQDHCATFLSKFPRNSSNIASIGRIAIQSFCSPLCEYSE----KESDMLSFIRLLK 240

Query: 246 SMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPDEDKELANLLTGYQDMVGL 303
           SML  SNAVA+VTF PSLL PS SKR QHMADTLLS+KAIPD DKEL  LLTGY+D+ G 
Sbjct: 241 SMLMVSNAVAIVTFPPSLLSPSSSKRLQHMADTLLSIKAIPDGDKELEKLLTGYKDINGF 300

[Close]

BLAST of Carg18491 vs. TAIR 10
Match: AT3G11220.2 (Paxneb protein-related )

HSP 1 Score: 306.2 bits (783), Expect = 2.9e-83
Identity = 190/385 (49.35%), Postives = 230/385 (59.74%), Query Frame = 0


Query: 6   MAATTKPRTSSFSRNLSSAHSSQTPGLKHGPNGTTFISSGIPDLDSTF-------CIIFI 65
           MAA     +SSFSRN+S   S Q PGLK GPNGT FISSGI DLD           ++ +
Sbjct: 1   MAAPNVRSSSSFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMV 60

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 61  MEDPEAPHHMDLLRTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPD 120

Query: 126 ---SSKLFWQYKKYFGESQESVNAIDGKCEFCNDFDLRKPFDRHFFSGKHVECVSILDSS 185
              S ++ WQY+KY  E+Q+  NAID   ++ NDFD+RKP +R F SG+ ++CVS+LDSS
Sbjct: 121 QGESLRIAWQYRKYL-ENQK--NAID---DYSNDFDMRKPLERQFLSGRPIDCVSLLDSS 180

Query: 186 SLSTTLDRCATFLSQVP------------------RNDGNISSAGRIAIQSLCAPQCDHS 245
            LS   D CATFLS+ P                  +N  NI+S GRIAIQS C+P C++S
Sbjct: 181 DLSIAQDHCATFLSKFPSKFCSSSILFTSLLYFQAQNSSNIASIGRIAIQSFCSPLCEYS 240

Query: 246 NMLELQEWEMLSFLRSLKSMLRSSNAVAVVTFSPSLLLPSFSKRWQHMADTLLSVKAIPD 303
                +E +MLSF+R LKSML  SNAVA+VTF PSLL PS SKR QHMADTLLS+KAIPD
Sbjct: 241 E----KESDMLSFIRLLKSMLMVSNAVAIVTFPPSLLSPSSSKRLQHMADTLLSIKAIPD 300

The following BLAST results are available for this feature:

BLAST of Carg18491 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026878.1	1.5e-166	100.00	Elongator complex protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6594913.1	1.5e-145	76.88	UDP-glycosyltransferase 91A1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022963340.1	8.8e-143	76.57	elongator complex protein 4 isoform X2 [Cucurbita moschata]	[more]
XP_023003256.1	4.8e-141	75.48	elongator complex protein 4 [Cucurbita maxima] >XP_023003257.1 elongator complex...	[more]
XP_022963337.1	1.6e-139	73.18	elongator complex protein 4 isoform X1 [Cucurbita moschata] >XP_022963338.1 elon...	[more]

BLAST of Carg18491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C778	6.0e-86	52.04	Elongator complex protein 4 OS=Arabidopsis thaliana OX=3702 GN=ELP4 PE=1 SV=1	[more]

BLAST of Carg18491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHQ8	4.3e-143	76.57	elongator complex protein 4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KLY1	2.3e-141	75.48	elongator complex protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111496919 PE=3 SV=...	[more]
A0A6J1HJT5	7.5e-140	73.18	elongator complex protein 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A0A0KLQ1	1.4e-130	69.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497360 PE=3 SV=1	[more]
A0A1S3B1C3	3.9e-128	69.04	elongator complex protein 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484919 P...	[more]

BLAST of Carg18491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11220.1	4.3e-87	52.04	Paxneb protein-related	[more]
AT3G11220.2	2.9e-83	49.35	Paxneb protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008728	Elongator complex protein 4	PFAM	PF05625	PAXNEB	coord: 63..302 e-value: 7.6E-45 score: 153.6
IPR008728	Elongator complex protein 4	PANTHER	PTHR12896	PAX6 NEIGHBOR PROTEIN PAXNEB	coord: 63..302 coord: 7..52
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 24..278 e-value: 3.0E-38 score: 133.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18491-RA	Carg18491-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0033588	elongator holoenzyme complex
cellular_component	GO:0008023	transcription elongation factor complex