Carg18488 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18488
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SKIP34
Location	Carg_Chr07: 2582863 .. 2583153 (+)
RNA-Seq Expression	Carg18488
Synteny	Carg18488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAACGGCCATCGCCGATCTTCGTTTGGAGATAGCCTTTTCCCCTACCAAACCTCCGTACCGGAAAACGGCGATGCTTCTGTCGTGGATAATATACGGGGAAGATTGGCGGAAGCAGAGTCGCGACTGGCTGTAGTTCGGGCTCGGGAGGTGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGTTTAGTCTCTGTGATGGAGATTCTCGAGAACTACCTGAAACGGCAGTATCGTGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTAGCTCGAAAATAG

mRNA sequence

ATGTGTAACGGCCATCGCCGATCTTCGTTTGGAGATAGCCTTTTCCCCTACCAAACCTCCGTACCGGAAAACGGCGATGCTTCTGTCGTGGATAATATACGGGGAAGATTGGCGGAAGCAGAGTCGCGACTGGCTGTAGTTCGGGCTCGGGAGGTGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGTTTAGTCTCTGTGATGGAGATTCTCGAGAACTACCTGAAACGGCAGTATCGTGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTAGCTCGAAAATAG

Coding sequence (CDS)

ATGTGTAACGGCCATCGCCGATCTTCGTTTGGAGATAGCCTTTTCCCCTACCAAACCTCCGTACCGGAAAACGGCGATGCTTCTGTCGTGGATAATATACGGGGAAGATTGGCGGAAGCAGAGTCGCGACTGGCTGTAGTTCGGGCTCGGGAGGTGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGTTTAGTCTCTGTGATGGAGATTCTCGAGAACTACCTGAAACGGCAGTATCGTGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTAGCTCGAAAATAG

Protein sequence

MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

Homology

[Close]

BLAST of Carg18488 vs. NCBI nr
Match: KAG6594909.1 (Protein SKIP34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026875.1 Protein SKIP34, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.2 bits (461), Expect = 2.1e-42
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE
Sbjct: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
Sbjct: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 96

[Close]

BLAST of Carg18488 vs. NCBI nr
Match: XP_023544310.1 (protein SKIP34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH RS F  ++ P QTSVPENGDASVVDN+RGRLAE ESRLA VRARE  LSRLLEE
Sbjct: 1  MCNGHHRSLFRGTISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKRLV VMEILENYLKR+YRDRQEYVVRLL+PV+RK
Sbjct: 61 MKRLVCVMEILENYLKRRYRDRQEYVVRLLAPVSRK 96

[Close]

BLAST of Carg18488 vs. NCBI nr
Match: XP_022978829.1 (protein SKIP34 [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH RS F  S+ P QTSVPENGDASVVDN+RGRLAE ESRLA VRARE  LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKRLVSVMEIL+NYLKR+YRDRQEYVVRLL+P++RK
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96

[Close]

BLAST of Carg18488 vs. NCBI nr
Match: XP_011657944.1 (protein SKIP34 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 4.5e-32
Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH R  F  SL PYQTSVPENG  SVVDN+RGRL E E RLA VRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of Carg18488 vs. NCBI nr
Match: XP_008440533.1 (PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis melo var. makuwa] >TYK12742.1 protein SKIP34 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31
Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH R  F  S  PYQTSVPENG ASVVDN+RGRL E E RLA VRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of Carg18488 vs. ExPASy Swiss-Prot
Match: Q8GWU7 (Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-15
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MC GH +S    S    ++   +  D SVVD++R RLAE E+RL   RARE ELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSH--DGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKR VSVMEI+E +L+R+++++++ + RL SPV+ K
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

[Close]

BLAST of Carg18488 vs. ExPASy TrEMBL
Match: A0A6J1IV54 (protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.7e-33
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH RS F  S+ P QTSVPENGDASVVDN+RGRLAE ESRLA VRARE  LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKRLVSVMEIL+NYLKR+YRDRQEYVVRLL+P++RK
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96

[Close]

BLAST of Carg18488 vs. ExPASy TrEMBL
Match: A0A0A0KIR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH R  F  SL PYQTSVPENG  SVVDN+RGRL E E RLA VRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of Carg18488 vs. ExPASy TrEMBL
Match: A0A5D3CN14 (Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003300 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH R  F  S  PYQTSVPENG ASVVDN+RGRL E E RLA VRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of Carg18488 vs. ExPASy TrEMBL
Match: A0A1S3B1B8 (protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 80/96 (83.33%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MCNGH R  F  S  PYQTSVPENG ASVVDN+RGRL E E RLA VRARE ELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of Carg18488 vs. ExPASy TrEMBL
Match: A0A6J1GF20 (protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 80/97 (82.47%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPEN-GDASVVDNIRGRLAEAESRLAVVRAREVELSRLLE 60
          MCNGH RS F  S+ P QTSVPEN GDASVVDN+RGRLAE ESRLA VRARE  LSRLLE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          EMKRLVSVMEILENYLKR+Y DRQEYVVRLL+PV+RK
Sbjct: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 97

[Close]

BLAST of Carg18488 vs. TAIR 10
Match: AT5G65495.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-16
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEE 60
          MC GH +S    S    ++   +  D SVVD++R RLAE E+RL   RARE ELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSH--DGEDDSVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK 97
          MKR VSVMEI+E +L+R+++++++ + RL SPV+ K
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

The following BLAST results are available for this feature:

BLAST of Carg18488 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594909.1	2.1e-42	100.00	Protein SKIP34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026875.1 Pr...	[more]
XP_023544310.1	1.5e-32	82.29	protein SKIP34 [Cucurbita pepo subsp. pepo]	[more]
XP_022978829.1	2.0e-32	81.25	protein SKIP34 [Cucurbita maxima]	[more]
XP_011657944.1	4.5e-32	83.33	protein SKIP34 [Cucumis sativus]	[more]
XP_008440533.1	1.0e-31	83.33	PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis m...	[more]

BLAST of Carg18488 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWU7	6.7e-15	48.96	Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1	[more]

BLAST of Carg18488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IV54	9.7e-33	81.25	protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1	[more]
A0A0A0KIR5	2.2e-32	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1	[more]
A0A5D3CN14	4.8e-32	83.33	Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00330...	[more]
A0A1S3B1B8	4.8e-32	83.33	protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1	[more]
A0A6J1GF20	1.1e-31	82.47	protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1	[more]

BLAST of Carg18488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65495.1	4.8e-16	48.96	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18488-RA	Carg18488-RA	mRNA