
Carg18486 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGTATCTTTCAGCCGTTTCTCATTGTGGGTTTGGAATAGGAAGGAGAAGAAGTCTGTTGCTAATGGTTCTCCTTCGAGTTCTTCGTCTGAGTTTGGTAATGGATTGAGAGAATCAGAGCGTCTCAAATTCAAAAGGGGGGTGGGGTTGCCTTCATCGGCGAAGAAGGTCGAGAAGCAGCAATGGGGAAGTAAGAAAGAAACGAGGATTGAGTGGGAATGTGATTATGTGATGGTACCATCCGGCGGTGATGGCATGCAAATGTCGGAGTCTGACGCCCCTGGTGAGGCCGATTGGAGTATTGGTTGGTTGGAGCCTCACGGTCCTGGCTTTAAGAGTGATGATAGTTTTGCCGTTCTGGTGCCTTCGTATAGCAATCGTTGCAAGGAAGTGGTGGAGTGTTCAAATGTGGAGCTTCTGGCTGCCATCAAGAATCTTCAAACTGAGTTCTCACCTGGTATGGCCGGCCTTCTATTTGTTGTGTGTTTTCACTGTTCTTTTATCCAATGCTTTCTGTCATATTGGCTATTTGCTTATAGCTACAGAGATTTTTACTTGTTTGTTCCTTCATAATTCTTTAGTTGATCTTGAGAGTGTACGTGAGATGTGGACATCGGTTGGAGATGGTATGGTGAGGGAGAGGGAGAGGGTGTCCCTAACGGGCACGTTTTAAAAAGAGGGAAAACTCAGGGAAAGTCTAAAAAGAATAATATGAGTGGCATGAGCTATTACAAATAGTATTAGAACTAGACACCAGGCGGTGTGCGGACGTTGGCCCCGAGGGGGTGGATTGTGAGATCCCACATCGGTAGTTGGAGAGTAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCTGCGCAAAAACCTCAAGGAGAAGTCTAGAAGAGAAAGTCCAAAGAGATAATATATAAGGGTGTGGAAACCTCTCCCTAGTTGCGTAAAAACCTCAAGGAGAAGTCTGGAAGAGAGTGAGGTTGGGATATTATAGAACATGATGTTATGGTTTGTGCGGCAGTTGGCAGATAAAGCCTTGAATGGCTCTTAAGACATGATTCCTGAAATTTGGGAGCACATTCACTGGGCTTGTTTTGGAGCTGTTTTCGGCAGTAGTGATCCATGAATTGGTTTAAAAGCTTTTGATTTTCAATGGAAGAACTAAGTCATTGAATCCCTTCCTTGCGGAAAGAAAATTCTTTGGATCTTTCATTCCAGAGACTAGTTATACTTATTGAGTTATTTAGAGCTGGACTCGTATCTAAGTTATCGTTCGGGTGCATCGCATAAGTTACTAAAATAAATTTCATGACTTGAAGGAAGCAACATCACCCAACTTTAGCATCATGTCACCAAGTGTGTCCTTGGACAAGCATCGGATTTTAGATTAAAATGAAACATCATGGACTAAGGAAACATGTCGTGGTGGCAGCTCGTCGCACGTAGGGTGATAGATTTACAGCCAAATTTCTCCTCTTTGATGTGCTGTTTGGTGAGAGTTCTTTGCTGTCAATCTCATAGATTATGTAGGGAGAGATCACTATCCCAAATATGATGCCTTTTCATTCTGTATTTACATCATAAAAATGAAGGGATAAGGCAAAAGAGAAGCTTTCTTTTAATGGTTTTGCAGCTGCTGATGAATATCTTATCTTATGCAGAGAGCCAGAAGCACATGGAACTGTTGCTTTCTTCCCTGCAAAACTCCAAAGCCTGAAATGTGCAGGCATAGCATCATCTTGA ATGGCGGTATCTTTCAGCCGTTTCTCATTGTGGGTTTGGAATAGGAAGGAGAAGAAGTCTGTTGCTAATGGTTCTCCTTCGAGTTCTTCGTCTGAGTTTGGTAATGGATTGAGAGAATCAGAGCGTCTCAAATTCAAAAGGGGGGTGGGGTTGCCTTCATCGGCGAAGAAGGTCGAGAAGCAGCAATGGGGAAGTAAGAAAGAAACGAGGATTGAGTGGGAATGTGATTATGTGATGGTACCATCCGGCGGTGATGGCATGCAAATGTCGGAGTCTGACGCCCCTGGTGAGGCCGATTGGAGTATTGGTTGGTTGGAGCCTCACGGTCCTGGCTTTAAGAGTGATGATAGTTTTGCCGTTCTGGTGCCTTCGTATAGCAATCGTTGCAAGGAAGTGGTGGAGTGTTCAAATGTGGAGCTTCTGGCTGCCATCAAGAATCTTCAAACTGAGTTCTCACCTGCTGCTGATGAATATCTTATCTTATGCAGAGAGCCAGAAGCACATGGAACTGTTGCTTTCTTCCCTGCAAAACTCCAAAGCCTGAAATGTGCAGGCATAGCATCATCTTGA ATGGCGGTATCTTTCAGCCGTTTCTCATTGTGGGTTTGGAATAGGAAGGAGAAGAAGTCTGTTGCTAATGGTTCTCCTTCGAGTTCTTCGTCTGAGTTTGGTAATGGATTGAGAGAATCAGAGCGTCTCAAATTCAAAAGGGGGGTGGGGTTGCCTTCATCGGCGAAGAAGGTCGAGAAGCAGCAATGGGGAAGTAAGAAAGAAACGAGGATTGAGTGGGAATGTGATTATGTGATGGTACCATCCGGCGGTGATGGCATGCAAATGTCGGAGTCTGACGCCCCTGGTGAGGCCGATTGGAGTATTGGTTGGTTGGAGCCTCACGGTCCTGGCTTTAAGAGTGATGATAGTTTTGCCGTTCTGGTGCCTTCGTATAGCAATCGTTGCAAGGAAGTGGTGGAGTGTTCAAATGTGGAGCTTCTGGCTGCCATCAAGAATCTTCAAACTGAGTTCTCACCTGCTGCTGATGAATATCTTATCTTATGCAGAGAGCCAGAAGCACATGGAACTGTTGCTTTCTTCCCTGCAAAACTCCAAAGCCTGAAATGTGCAGGCATAGCATCATCTTGA MAVSFSRFSLWVWNRKEKKSVANGSPSSSSSEFGNGLRESERLKFKRGVGLPSSAKKVEKQQWGSKKETRIEWECDYVMVPSGGDGMQMSESDAPGEADWSIGWLEPHGPGFKSDDSFAVLVPSYSNRCKEVVECSNVELLAAIKNLQTEFSPAADEYLILCREPEAHGTVAFFPAKLQSLKCAGIASS Homology
BLAST of Carg18486 vs. NCBI nr
Match: KAG7026873.1 (hypothetical protein SDJN02_10880, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 385.2 bits (988), Expect = 3.3e-103 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
BLAST of Carg18486 vs. NCBI nr
Match: XP_022962915.1 (uncharacterized protein LOC111463276 [Cucurbita moschata]) HSP 1 Score: 315.8 bits (808), Expect = 2.4e-82 Identity = 154/161 (95.65%), Postives = 158/161 (98.14%), Query Frame = 0
BLAST of Carg18486 vs. NCBI nr
Match: KAG6594907.1 (hypothetical protein SDJN03_11460, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 313.9 bits (803), Expect = 9.3e-82 Identity = 153/161 (95.03%), Postives = 158/161 (98.14%), Query Frame = 0
BLAST of Carg18486 vs. NCBI nr
Match: XP_023518894.1 (uncharacterized protein LOC111782277 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 311.6 bits (797), Expect = 4.6e-81 Identity = 152/161 (94.41%), Postives = 157/161 (97.52%), Query Frame = 0
BLAST of Carg18486 vs. NCBI nr
Match: XP_023002981.1 (uncharacterized protein LOC111496728 [Cucurbita maxima]) HSP 1 Score: 305.1 bits (780), Expect = 4.3e-79 Identity = 147/161 (91.30%), Postives = 155/161 (96.27%), Query Frame = 0
BLAST of Carg18486 vs. ExPASy TrEMBL
Match: A0A6J1HGF0 (uncharacterized protein LOC111463276 OS=Cucurbita moschata OX=3662 GN=LOC111463276 PE=4 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82 Identity = 154/161 (95.65%), Postives = 158/161 (98.14%), Query Frame = 0
BLAST of Carg18486 vs. ExPASy TrEMBL
Match: A0A6J1KMU6 (uncharacterized protein LOC111496728 OS=Cucurbita maxima OX=3661 GN=LOC111496728 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 2.1e-79 Identity = 147/161 (91.30%), Postives = 155/161 (96.27%), Query Frame = 0
BLAST of Carg18486 vs. ExPASy TrEMBL
Match: A0A1S3B0X6 (uncharacterized protein LOC103484930 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484930 PE=4 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 7.5e-61 Identity = 126/161 (78.26%), Postives = 137/161 (85.09%), Query Frame = 0
BLAST of Carg18486 vs. ExPASy TrEMBL
Match: A0A1S3B1D7 (uncharacterized protein LOC103484930 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484930 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 3.7e-60 Identity = 125/154 (81.17%), Postives = 133/154 (86.36%), Query Frame = 0
BLAST of Carg18486 vs. ExPASy TrEMBL
Match: A0A5D3CMT4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003280 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 6.3e-60 Identity = 125/160 (78.12%), Postives = 134/160 (83.75%), Query Frame = 0
BLAST of Carg18486 vs. TAIR 10
Match: AT4G38060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 65.5 bits (158), Expect = 5.4e-11 Identity = 45/130 (34.62%), Postives = 64/130 (49.23%), Query Frame = 0
BLAST of Carg18486 vs. TAIR 10
Match: AT4G38060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10 Identity = 44/124 (35.48%), Postives = 62/124 (50.00%), Query Frame = 0
BLAST of Carg18486 vs. TAIR 10
Match: AT5G65480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 61.2 bits (147), Expect = 1.0e-09 Identity = 56/174 (32.18%), Postives = 79/174 (45.40%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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