Carg18451 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18451
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	E3 ubiquitin-protein ligase RMA1H1-like
Location	Carg_Chr20: 925007 .. 925675 (-)
RNA-Seq Expression	Carg18451
Synteny	Carg18451

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGCTGTACCTTGTTCCAGATGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCAGTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCTACGCTCGTCCCACTTTACGGAAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGGAGAGCCACCAGCATCTCCAAGCGCTCAACTTCATCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCACCCAGTGATCGGGATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACGACAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCTGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAA

mRNA sequence

ATGGAGCAGCTGTACCTTGTTCCAGATGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCAGTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCTACGCTCGTCCCACTTTACGGAAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGGAGAGCCACCAGCATCTCCAAGCGCTCAACTTCATCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCACCCAGTGATCGGGATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACGACAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCTGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAA

Coding sequence (CDS)

ATGGAGCAGCTGTACCTTGTTCCAGATGCTGATGAAGGAGTATCCCATGGCTTTGAATGCAACATATGCCTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGCCATCTCTTCTGTTGGCCCTGCATTTACAAATGGATCCAGTACAAGAGCTTGTCCTCACAGCAACAATGCCAGCAAGAGGAATGTCGATGTCCCGTTTGCAAGGCCGAGGTCTCCCACGCTACGCTCGTCCCACTTTACGGAAAATTTCAGACTACACCTCCCTCCAAAACTAAACCACCATCAAATCTTGGTCCAGCCATCCCACGCCGGCCTCTTGGTCCTGCCTGTGGGGGAGAGCCACCAGCATCTCCAAGCGCTCAACTTCATCATCATCACAACTATTCTCAGTCACACGACGATTACATCGCTTCATCGATGCTTAGCTCGAGCAGTATTACAACGAACATTATCCACCCAGTGATCGGGATGTTCGGTGACGCAGTTTACACAAGAACGTTTGGAAACACGACGACAAACCTTTATACTTATCCTAATTCATATGGTCATGTAAGCAATAGTAGTGTAAGGCTGAGGAGGCACATAATGCAGGCTGATGAGTCGCTGAGCAGAATCTGTTTCTTCCTGTTTTGTTGCTTAGTGTTGTGTCTTTTATTATTCTAA

Protein sequence

MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF

Homology

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BLAST of Carg18451 vs. NCBI nr
Match: KAG7010371.1 (E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 461.5 bits (1186), Expect = 4.2e-126
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ 60
           MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ
Sbjct: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ 60

Query: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120
           QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP
Sbjct: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120

Query: 121 SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
           SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP
Sbjct: 121 SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222

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BLAST of Carg18451 vs. NCBI nr
Match: KAG6570508.1 (E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 460.3 bits (1183), Expect = 9.4e-126
Identity = 221/222 (99.55%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ 60
           MEQLYLVPDADEGVSHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ
Sbjct: 1   MEQLYLVPDADEGVSHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ 60

Query: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120
           QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP
Sbjct: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120

Query: 121 SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
           SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP
Sbjct: 121 SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 222

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BLAST of Carg18451 vs. NCBI nr
Match: XP_023513341.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122
Identity = 219/222 (98.65%), Postives = 219/222 (98.65%), Query Frame = 0


Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ 60
           MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWI YKSLSSQQQCQ
Sbjct: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQ 60

Query: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120
           QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACG EPPASP
Sbjct: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASP 120

Query: 121 SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
           SAQL HHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP
Sbjct: 121 SAQL-HHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 221

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BLAST of Carg18451 vs. NCBI nr
Match: XP_022943375.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022943376.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata])

HSP 1 Score: 449.1 bits (1154), Expect = 2.2e-122
Identity = 218/222 (98.20%), Postives = 220/222 (99.10%), Query Frame = 0


Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ 60
           MEQLYLVP+ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWI YKSLSSQQQCQ
Sbjct: 1   MEQLYLVPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQ 60

Query: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120
           QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP
Sbjct: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120

Query: 121 SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
           SAQL HHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTT+NLYTYP
Sbjct: 121 SAQL-HHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 221

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BLAST of Carg18451 vs. NCBI nr
Match: XP_022986029.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022986030.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022986031.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima])

HSP 1 Score: 435.6 bits (1119), Expect = 2.5e-118
Identity = 212/220 (96.36%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ 60
           MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWI YKSLSSQQQCQ
Sbjct: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQ 60

Query: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120
           QEECRCPVCKAEVSHATLVPLYGKFQTT PSKTKPPSNLGPAIPRRPLGPACG EPPASP
Sbjct: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTAPSKTKPPSNLGPAIPRRPLGPACGAEPPASP 120

Query: 121 SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
           S+QL HHHNYSQSH+DYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP
Sbjct: 121 SSQL-HHHNYSQSHNDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLL 221
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLV  LL
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVFLLL 219

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BLAST of Carg18451 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-54
Identity = 116/227 (51.10%), Postives = 148/227 (65.20%), Query Frame = 0


Query: 9   DADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRCPV 68
           + +E +S GF+CNICLD V +PV+TLCGHL+CWPCIYKWI ++S+SS+   QQ+  +CPV
Sbjct: 30  EVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQP-QCPV 89

Query: 69  CKAEVSHATLVPLYGK-FQTTPPSKTKPPSNLGPAIPRRPLGPACGGE-----PPASPSA 128
           CKAEVS  TL+PLYG+  Q+T PS+ K P NLG  IP+RP  P CGG        ++PS 
Sbjct: 90  CKAEVSEKTLIPLYGRGGQSTKPSEGKAP-NLGIVIPQRPPSPRCGGHFLLPTTDSNPSQ 149

Query: 129 QLHHHHNYSQS-------HDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTN 188
            L       QS          Y++S MLS    T N++     M G+  Y R FGN++T 
Sbjct: 150 LLQRRGYQQQSQTRQPAYQGSYMSSPMLSPGGATANMLQH--SMIGEVAYARIFGNSSTT 209

Query: 189 LYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           +YTYPNSY    +SS R+RR + QAD SL RICFFLFCC V CL+LF
Sbjct: 210 MYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

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BLAST of Carg18451 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.9e-45
Identity = 101/219 (46.12%), Postives = 139/219 (63.47%), Query Frame = 0


Query: 10  ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRCPVC 69
           +D+     F+CNICLDSVQ+PVVTLCGHLFCWPCI+KW+  +S S+  + Q+   +CPVC
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVC 97

Query: 70  KAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQL----- 129
           K++VSH+TLVPLYG+ + T   + K       ++P+RP+GP    E P SP A       
Sbjct: 98  KSKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVGPVYRLEMPNSPYASTDLRLS 157

Query: 130 HHHHNYSQSHDDYIASSMLSSSSIT-TNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSY 189
              H  S     Y  S ++SS+S++ + ++ PV+ M G+ V TR FG    + + YP++Y
Sbjct: 158 QRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTY 217

Query: 190 GHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
                S  R+RR IMQAD+SL RI FF  CC+VLCLLLF
Sbjct: 218 NLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

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BLAST of Carg18451 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-34
Identity = 96/233 (41.20%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 4   LYLVPDADEGVSHG-FECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQE 63
           L   P A +    G F+CNICLD+  DPVVTLCGHLFCWPCIYKW+  +   S     Q 
Sbjct: 27  LTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQ--LSSVSVDQH 86

Query: 64  ECRCPVCKAEVSHATLVPLYGKFQTTPPSK--TKPPSNLGPAIPRRPLGPACGGEPPAS- 123
           +  CPVCK+ ++  +LVPLYG+  ++P S   +K    L   IPRRP  P+    P  S 
Sbjct: 87  QNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSA 146

Query: 124 ----PSAQ------LHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTF 183
               PS Q        H+H YS        S+ L ++++  + ++PVIGMFGD VYTR F
Sbjct: 147 SSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDL-ANAVMMSFLYPVIGMFGDLVYTRIF 206

Query: 184 GNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           G T TN    P              + +MQ ++SL+R+  F  CC++LCLLLF
Sbjct: 207 G-TFTNTIAQPYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

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BLAST of Carg18451 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-31
Identity = 88/212 (41.51%), Postives = 115/212 (54.25%), Query Frame = 0


Query: 18  FECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQ-----EECRCPVCKAE 77
           F+CNICLD V+DPVVTLCGHLFCWPCI+KW  Y S +S+Q+  Q     E  +CPVCK++
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKW-TYASNNSRQRVDQYDHKREPPKCPVCKSD 78

Query: 78  VSHATLVPLYGKFQTTPPSKTKPPSN-LGPAIPRRPLGPACG-GEPPASPSAQLHHHHNY 137
           VS ATLVP+YG+ Q  P S +  PS   GP    R +G   G GE               
Sbjct: 79  VSEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGE--------------- 138

Query: 138 SQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSYGHVSNSS 197
                         S      +  PV+G+  + VY R FG +++N+  Y        + +
Sbjct: 139 --------------SQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPY-------RDMN 193

Query: 198 VRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           VR RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 199 VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

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BLAST of Carg18451 vs. ExPASy Swiss-Prot
Match: O35445 (E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 13  GVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRCPVCKAE 72
           G S  FECNICL++ ++ VV++CGHL+CWPC+++W+         + + +   CPVCKA 
Sbjct: 20  GASATFECNICLETAREAVVSVCGHLYCWPCLHQWL---------ETRPDRQECPVCKAG 79

Query: 73  VSHATLVPLYGKFQTTP--PSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLH 126
           +S   +VPLYG+    P  P    PP   G    +RP   + GG  P   +   H
Sbjct: 80  ISREKVVPLYGRGSQKPQDPRLKTPPRPQG----QRPAPESRGGFQPFGDAGGFH 121

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BLAST of Carg18451 vs. ExPASy TrEMBL
Match: A0A6J1FXR1 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC111448157 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.1e-122
Identity = 218/222 (98.20%), Postives = 220/222 (99.10%), Query Frame = 0


Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ 60
           MEQLYLVP+ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWI YKSLSSQQQCQ
Sbjct: 1   MEQLYLVPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQ 60

Query: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120
           QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP
Sbjct: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120

Query: 121 SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
           SAQL HHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTT+NLYTYP
Sbjct: 121 SAQL-HHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 221

[Close]

BLAST of Carg18451 vs. ExPASy TrEMBL
Match: A0A6J1J9X8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111483889 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.2e-118
Identity = 212/220 (96.36%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQ 60
           MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWI YKSLSSQQQCQ
Sbjct: 1   MEQLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQ 60

Query: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASP 120
           QEECRCPVCKAEVSHATLVPLYGKFQTT PSKTKPPSNLGPAIPRRPLGPACG EPPASP
Sbjct: 61  QEECRCPVCKAEVSHATLVPLYGKFQTTAPSKTKPPSNLGPAIPRRPLGPACGAEPPASP 120

Query: 121 SAQLHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180
           S+QL HHHNYSQSH+DYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP
Sbjct: 121 SSQL-HHHNYSQSHNDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYP 180

Query: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLL 221
           NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLV  LL
Sbjct: 181 NSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVFLLL 219

[Close]

BLAST of Carg18451 vs. ExPASy TrEMBL
Match: A0A0A0KB39 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.2e-91
Identity = 173/228 (75.88%), Postives = 193/228 (84.65%), Query Frame = 0


Query: 3   QLYLVPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQE 62
           Q+Y + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+  K LS+ Q+CQQ 
Sbjct: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSA-QRCQQV 86

Query: 63  ECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG-PACGGEPPASPS 122
           ECRCPVCKA+VS ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG  AC  E PASP+
Sbjct: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146

Query: 123 AQLH-------HHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTT 182
            QLH        H  Y+Q+ ++YIASSMLSSSSITTNIIHPVIGMFGD +Y RTFGNTTT
Sbjct: 147 PQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206

Query: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           NLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICFF FCCLV+CLLLF
Sbjct: 207 NLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 252

[Close]

BLAST of Carg18451 vs. ExPASy TrEMBL
Match: A0A1S3BJB6 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.1e-90
Identity = 171/224 (76.34%), Postives = 190/224 (84.82%), Query Frame = 0


Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRC 66
           + DA++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+  K LS+ QQCQQ ECRC
Sbjct: 30  ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHSKKLSA-QQCQQVECRC 89

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLG-PACGGEPPASPSAQLH 126
           PVCKA+VS ATL+P+YGKFQTT  SK K P NLGPAIPRRPLG  AC  E PASP+ QLH
Sbjct: 90  PVCKAKVSRATLIPIYGKFQTTDASKAKAPPNLGPAIPRRPLGWHACEAETPASPTPQLH 149

Query: 127 HHH-------NYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYT 186
            H+        YSQ+ ++YI+SSMLSSSSITTNIIHPVIGMFGD +Y RT GNTTTNLY+
Sbjct: 150 SHNYSPQSHSYYSQTQNEYISSSMLSSSSITTNIIHPVIGMFGDTIYPRTLGNTTTNLYS 209

Query: 187 YPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           YPNSYG+VSNSSVRLRRHIMQADESLSRICFF FCCLV+CLLLF
Sbjct: 210 YPNSYGNVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 252

[Close]

BLAST of Carg18451 vs. ExPASy TrEMBL
Match: A0A6J1CHP4 (E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111010997 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.8e-90
Identity = 172/225 (76.44%), Postives = 188/225 (83.56%), Query Frame = 0


Query: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRC 66
           V DAD G SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+ YK+LS+QQQCQ +E  C
Sbjct: 29  VSDADGGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYKNLSAQQQCQPQENCC 88

Query: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACG-GEPPASPSAQLH 126
           PVCKAEVSHA+LVPLYG+FQTT PS+TK  S LGPAIPRRPLGPACG  E PASPS QLH
Sbjct: 89  PVCKAEVSHASLVPLYGRFQTTNPSETK-ASQLGPAIPRRPLGPACGAAEAPASPSPQLH 148

Query: 127 HHHNY--------SQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLY 186
            H+ Y         ++  DYI SSML SSSITTNIIHPVIG FG+A+Y R FGNTTT+L+
Sbjct: 149 PHNYYLPHAHSYHPRTTQDYITSSMLGSSSITTNIIHPVIGTFGEAIYARAFGNTTTSLH 208

Query: 187 TYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           TYPNSYGHVSNSS RLRRH+MQADESLSRICFF FCCLVLC L F
Sbjct: 209 TYPNSYGHVSNSSARLRRHMMQADESLSRICFFFFCCLVLCFLSF 252

[Close]

BLAST of Carg18451 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-46
Identity = 101/219 (46.12%), Postives = 139/219 (63.47%), Query Frame = 0


Query: 10  ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRCPVC 69
           +D+     F+CNICLDSVQ+PVVTLCGHLFCWPCI+KW+  +S S+  + Q+   +CPVC
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVC 97

Query: 70  KAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQL----- 129
           K++VSH+TLVPLYG+ + T   + K       ++P+RP+GP    E P SP A       
Sbjct: 98  KSKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVGPVYRLEMPNSPYASTDLRLS 157

Query: 130 HHHHNYSQSHDDYIASSMLSSSSIT-TNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSY 189
              H  S     Y  S ++SS+S++ + ++ PV+ M G+ V TR FG    + + YP++Y
Sbjct: 158 QRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTY 217

Query: 190 GHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
                S  R+RR IMQAD+SL RI FF  CC+VLCLLLF
Sbjct: 218 NLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Carg18451 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-46
Identity = 101/219 (46.12%), Postives = 139/219 (63.47%), Query Frame = 0


Query: 10  ADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRCPVC 69
           +D+     F+CNICLDSVQ+PVVTLCGHLFCWPCI+KW+  +S S+  + Q+   +CPVC
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVC 97

Query: 70  KAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQL----- 129
           K++VSH+TLVPLYG+ + T   + K       ++P+RP+GP    E P SP A       
Sbjct: 98  KSKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVGPVYRLEMPNSPYASTDLRLS 157

Query: 130 HHHHNYSQSHDDYIASSMLSSSSIT-TNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSY 189
              H  S     Y  S ++SS+S++ + ++ PV+ M G+ V TR FG    + + YP++Y
Sbjct: 158 QRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTY 217

Query: 190 GHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
                S  R+RR IMQAD+SL RI FF  CC+VLCLLLF
Sbjct: 218 NLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Carg18451 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-35
Identity = 96/233 (41.20%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 4   LYLVPDADEGVSHG-FECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQE 63
           L   P A +    G F+CNICLD+  DPVVTLCGHLFCWPCIYKW+  +   S     Q 
Sbjct: 27  LTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQ--LSSVSVDQH 86

Query: 64  ECRCPVCKAEVSHATLVPLYGKFQTTPPSK--TKPPSNLGPAIPRRPLGPACGGEPPAS- 123
           +  CPVCK+ ++  +LVPLYG+  ++P S   +K    L   IPRRP  P+    P  S 
Sbjct: 87  QNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP-APSALRNPITSA 146

Query: 124 ----PSAQ------LHHHHNYSQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTF 183
               PS Q        H+H YS        S+ L ++++  + ++PVIGMFGD VYTR F
Sbjct: 147 SSLNPSLQHQTLSPSFHNHQYSPRGFTTTESTDL-ANAVMMSFLYPVIGMFGDLVYTRIF 206

Query: 184 GNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           G T TN    P              + +MQ ++SL+R+  F  CC++LCLLLF
Sbjct: 207 G-TFTNTIAQPYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Carg18451 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-32
Identity = 88/212 (41.51%), Postives = 115/212 (54.25%), Query Frame = 0


Query: 18  FECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQ-----EECRCPVCKAE 77
           F+CNICLD V+DPVVTLCGHLFCWPCI+KW  Y S +S+Q+  Q     E  +CPVCK++
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKW-TYASNNSRQRVDQYDHKREPPKCPVCKSD 78

Query: 78  VSHATLVPLYGKFQTTPPSKTKPPSN-LGPAIPRRPLGPACG-GEPPASPSAQLHHHHNY 137
           VS ATLVP+YG+ Q  P S +  PS   GP    R +G   G GE               
Sbjct: 79  VSEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGE--------------- 138

Query: 138 SQSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTYPNSYGHVSNSS 197
                         S      +  PV+G+  + VY R FG +++N+  Y        + +
Sbjct: 139 --------------SQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPY-------RDMN 193

Query: 198 VRLRRHIMQADESLSRICFFLFCCLVLCLLLF 223
           VR RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 199 VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Carg18451 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-24
Identity = 57/124 (45.97%), Postives = 66/124 (53.23%), Query Frame = 0


Query: 9   DADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIQYKSLSSQQQCQQEECRCPV 68
           D +   S  FECNICLD  QDP+VTLCGHLFCWPC+YKW+   S S           CPV
Sbjct: 12  DTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKD---------CPV 71

Query: 69  CKAEVSHATLVPLY--GKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHH 128
           CKA +    LVPLY  GK    P SK+ P    G  +P RP G       P  P+    H
Sbjct: 72  CKAVIEEDRLVPLYGRGKSSADPRSKSIP----GLEVPNRPSGQRPETAQPPDPNHGFAH 122

Query: 129 HHNY 131
           HH +
Sbjct: 132 HHGF 122

The following BLAST results are available for this feature:

BLAST of Carg18451 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010371.1	4.2e-126	100.00	E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6570508.1	9.4e-126	99.55	E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023513341.1	1.3e-122	98.65	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022943375.1	2.2e-122	98.20	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022943376.1 E3 ...	[more]
XP_022986029.1	2.5e-118	96.36	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022986030.1 E3 ub...	[more]

BLAST of Carg18451 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	1.2e-54	51.10	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
O64425	2.9e-45	46.12	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
Q8GUK7	5.2e-34	41.20	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
P93030	3.1e-31	41.51	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
O35445	1.1e-15	37.39	E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1	[more]

BLAST of Carg18451 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXR1	1.1e-122	98.20	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J9X8	1.2e-118	96.36	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111483...	[more]
A0A0A0KB39	6.2e-91	75.88	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 P...	[more]
A0A1S3BJB6	1.1e-90	76.34	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 ...	[more]
A0A6J1CHP4	1.8e-90	76.44	E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Carg18451 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03510.1	2.1e-46	46.12	RING membrane-anchor 1	[more]
AT4G03510.2	2.1e-46	46.12	RING membrane-anchor 1	[more]
AT4G27470.1	3.7e-35	41.20	RING membrane-anchor 3	[more]
AT4G28270.1	2.2e-32	41.51	RING membrane-anchor 2	[more]
AT1G19310.1	6.5e-24	45.97	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 20..69 e-value: 1.0E-8 score: 44.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 20..70 score: 12.858103
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 7..83 e-value: 5.7E-17 score: 62.9
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 20..67 e-value: 1.5E-8 score: 34.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..125
None	No IPR available	PANTHER	PTHR12313:SF75	SUBFAMILY NOT NAMED	coord: 8..222
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 18..71 e-value: 5.80208E-24 score: 88.13
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 14..82
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 8..222
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 35..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18451-RA	Carg18451-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity